Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 4.8e-127 458.0 256 100.0
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.4e-105 386.7 252 85.7
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 2.3e-105 386.0 253 85.8
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.5e-99 365.9 257 81.3
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.2e-99 365.2 251 82.9
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.2e-98 363.6 251 82.5
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.6e-98 363.2 254 80.7
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 2.3e-97 359.4 254 80.7
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.4e-96 355.5 253 79.4
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 2.2e-95 352.8 255 76.1
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.4e-94 350.1 254 77.2
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 4.1e-94 348.6 255 76.9
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 7.0e-94 347.8 256 72.3
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 7.7e-93 344.4 251 77.7
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.1e-91 340.5 247 74.5
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.1e-91 340.5 256 74.2
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.5e-91 340.1 254 75.2
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.5e-91 340.1 254 74.4
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.9e-91 339.7 256 74.6
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.3e-91 339.0 252 75.4
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 9.5e-91 337.4 254 74.4
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.8e-90 335.9 251 77.7
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 2.8e-90 335.9 254 76.0
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.6e-90 335.5 253 73.9
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 8.0e-90 334.3 254 74.8
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.4e-89 333.6 254 74.8
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.8e-89 333.2 254 74.8
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.8e-89 333.2 245 77.6
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 2.3e-89 332.8 253 73.1
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.6e-88 329.3 252 71.8
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 3.4e-88 328.9 245 78.4
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 4.4e-88 328.6 238 77.7
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 4.4e-88 328.6 244 70.5
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.7e-88 328.2 253 73.5
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 5.7e-88 328.2 254 71.7
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 7.5e-88 327.8 244 76.6
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 7.5e-88 327.8 252 74.2
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 9.8e-88 327.4 248 74.2
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.2e-87 326.2 264 70.1
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.8e-87 325.9 254 73.2
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.7e-87 325.5 254 73.2
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 6.3e-87 324.7 255 73.7
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 1.4e-86 323.6 255 73.7
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.4e-86 323.6 251 75.7
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.8e-86 323.2 254 74.4
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.8e-86 323.2 251 75.3
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 3.1e-86 322.4 248 74.2
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 4.1e-86 322.0 254 72.4
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 7.0e-86 321.2 244 73.8
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-85 320.5 248 72.2
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.2e-85 320.5 257 70.4
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 2.0e-85 319.7 251 73.3
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 2.0e-85 319.7 254 71.3
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 4.5e-85 318.5 255 68.6
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 5.9e-85 318.2 271 69.7
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 7.8e-85 317.8 246 74.8
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 7.8e-85 317.8 254 68.5
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.0e-84 317.4 254 71.7
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.3e-84 317.0 249 72.3
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.3e-84 317.0 252 68.7
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.3e-84 316.2 246 74.4
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 2.3e-84 316.2 255 70.6
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 8.6e-84 314.3 238 72.7
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.5e-83 313.5 243 73.3
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.5e-83 313.5 244 71.3
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.5e-83 312.8 243 72.8
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 2.5e-83 312.8 254 68.9
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 3.3e-83 312.4 253 72.7
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 3.3e-83 312.4 255 70.2
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 7.3e-83 311.2 255 71.8
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 9.5e-83 310.8 257 72.8
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.6e-82 310.1 239 72.0
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 1.6e-82 310.1 255 67.8
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.1e-82 309.7 252 71.8
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.1e-82 309.7 254 66.1
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 3.6e-82 308.9 239 72.4
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.7e-82 308.5 256 71.1
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.0e-81 307.4 244 72.5
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 3.0e-81 305.8 253 71.1
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 4.0e-81 305.4 245 70.2
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 4.0e-81 305.4 255 70.6
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 4.0e-81 305.4 193 79.3
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 5.2e-81 305.1 255 67.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 6.8e-81 304.7 256 70.7
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 2.6e-80 302.8 248 70.6
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 2.6e-80 302.8 257 70.4
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.6e-80 302.8 214 70.1
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 4.4e-80 302.0 267 66.7
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 4.4e-80 302.0 254 69.3
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.4e-80 302.0 252 68.3
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 5.8e-80 301.6 202 74.3
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 9.8e-80 300.8 241 66.0
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.7e-79 300.1 244 68.0
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.2e-79 299.7 256 69.9
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 9.2e-78 294.3 247 68.4
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 2.0e-77 293.1 245 68.6
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.0e-77 293.1 244 68.9
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 2.3e-76 289.7 244 66.4
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 2.3e-76 289.7 344 52.0
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 5.0e-76 288.5 250 67.2
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.2e-74 283.9 230 65.7
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.1e-74 283.1 255 66.3
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.1e-74 283.1 280 62.5
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.1e-73 279.3 299 59.2
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.0e-72 276.6 254 65.7
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.4e-72 275.8 254 65.4
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.3e-71 273.9 246 62.6
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.4e-70 269.6 250 66.4
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 8.6e-68 261.2 252 61.9
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.5e-67 260.4 335 52.5
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.8e-66 256.1 289 53.3
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 3.6e-66 255.8 253 58.9
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.0e-65 252.3 249 59.4
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.0e-64 250.0 244 60.2
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 4.4e-64 248.8 245 63.7
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 4.1e-62 242.3 178 69.1
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.5e-56 223.8 247 57.9
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.6e-56 223.0 250 56.8
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 2.6e-56 223.0 246 59.3
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 6.4e-55 218.4 244 55.3
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 7.1e-54 214.9 216 54.2
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.0e-52 211.1 227 52.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.3e-52 210.7 148 70.9
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 3.6e-50 202.6 136 76.5
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 3.4e-48 196.1 172 68.0
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 3.2e-46 189.5 131 76.3
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-42 177.2 128 70.3
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.5e-40 170.6 137 70.1
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 5.8e-40 168.7 256 43.4
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.9e-39 166.4 193 49.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.9e-39 166.4 147 70.7
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 5.4e-38 162.2 193 59.1
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 6.9e-33 145.2 226 38.1
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 2.3e-28 130.2 232 36.6
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.1e-28 129.0 341 38.7
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 8.7e-28 128.3 113 76.1
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.6e-26 124.0 220 35.0
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.1e-26 123.6 110 69.1
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.5e-24 117.5 92 64.1
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.4e-22 110.9 72 76.4
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.5e-21 106.3 58 82.8
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 5.1e-20 102.4 99 54.5
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 7.4e-19 98.6 79 62.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 9.7e-11 71.6 81 65.4
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.7e-07 60.8 206 30.1
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.0e-07 59.3 34 70.6
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-06 57.8 64 50.0
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 4.2e-06 56.2 38 68.4


User provided reference genes

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