Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 2.4e-33 144.8 67 100.0
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 6.9e-33 143.3 67 98.5
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 6.9e-33 143.3 67 98.5
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 6.9e-33 143.3 67 98.5
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 6.9e-33 143.3 67 98.5
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 6.9e-33 143.3 67 98.5
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 6.9e-33 143.3 67 98.5
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 6.9e-33 143.3 67 98.5
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 6.9e-33 143.3 67 98.5
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 6.9e-33 143.3 67 98.5
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 9.9e-32 139.4 67 97.0
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-30 135.2 62 98.4
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-30 135.2 62 98.4
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 9.3e-30 132.9 67 91.0
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.0e-28 129.4 67 85.1
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.0e-28 129.4 67 85.1
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 1.3e-28 129.0 67 86.6
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 86.6
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 86.6
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 83.6
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 6.6e-28 126.7 67 85.1
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 8.7e-28 126.3 67 83.6
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 82.1
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 82.1
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 83.6
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 2.5e-27 124.8 67 80.6
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 2.5e-27 124.8 67 83.6
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 3.3e-27 124.4 67 80.6
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 80.6
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 83.6
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 83.6
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 83.6
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 83.6
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 4.3e-27 124.0 67 83.6
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 7.3e-27 123.2 67 79.1
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 7.3e-27 123.2 67 80.6
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 1.3e-26 122.5 67 80.6
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 1.3e-26 122.5 67 83.6
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 1.6e-26 122.1 67 79.1
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 1.6e-26 122.1 69 82.6
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 3.6e-26 120.9 67 79.1
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 4.8e-26 120.6 67 79.1
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 4.8e-26 120.6 67 77.6
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 6.2e-26 120.2 65 80.0
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.2e-26 120.2 67 79.1
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 8.1e-26 119.8 67 82.1
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.4e-25 119.0 62 85.5
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 1.8e-25 118.6 66 81.8
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 3.1e-25 117.9 67 82.1
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 2.6e-24 114.8 62 79.0
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 76.1
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 4.9e-23 110.5 67 76.1
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 6.4e-23 110.2 68 76.5
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 6.4e-23 110.2 68 76.5
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 2.4e-22 108.2 67 74.6
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 1.2e-21 105.9 61 77.0
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 1.6e-21 105.5 67 71.6
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 1.6e-21 105.5 67 74.6
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.7e-21 104.8 67 71.6
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 2.7e-21 104.8 67 71.6
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 3.5e-21 104.4 51 96.1
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 4.6e-21 104.0 62 74.2
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 1.0e-20 102.8 47 97.9
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 2.3e-20 101.7 67 74.6
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 1.5e-19 99.0 56 76.8
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 4.3e-19 97.4 67 68.7
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 1.1e-17 92.8 59 69.5
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.1e-17 91.3 67 61.2
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 9.0e-17 89.7 67 61.2
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.7e-15 85.5 67 61.2
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.2e-14 81.3 67 59.7
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.6e-13 79.0 67 58.2
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.1e-13 78.6 67 58.2
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 2.1e-13 78.6 50 68.0
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 3.5e-13 77.8 45 77.8
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 7.9e-13 76.6 51 72.5
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 5.1e-12 73.9 66 54.5
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 3.7e-10 67.8 66 51.5
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 6.9e-09 63.5 38 76.3
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 2.0e-08 62.0 37 70.3
Cre10.g462950 Chlamydomonas reinhardtii HOM05D007549 ORTHO05D009532 7.6e-08 60.1 65 47.7


User provided reference genes

Program Settings