Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 0.0e+00 1435.2 866 100.0
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 4.8e-296 1021.1 866 74.6
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 6.5e-269 931.0 873 70.2
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 2.8e-227 792.7 837 63.8
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 3.2e-223 779.2 869 57.9
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.4e-215 751.9 873 56.4
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.5e-214 749.2 880 55.1
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.7e-208 730.3 841 55.8
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 7.9e-206 721.5 910 55.2
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 6.7e-205 718.4 890 55.6
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.4e-202 710.7 874 53.3
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.3e-200 704.1 879 52.0
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 1.7e-200 703.7 910 51.3
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 2.2e-200 703.4 867 55.7
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.9e-196 690.3 745 57.6
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 7.4e-196 688.3 868 56.6
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 7.4e-196 688.3 868 56.6
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 1.1e-194 684.5 913 52.2
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.8e-194 683.7 772 55.6
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 6.9e-194 681.8 876 50.0
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 2.6e-193 679.9 842 56.8
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 5.9e-193 678.7 864 51.7
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.8e-192 676.0 866 54.7
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 3.8e-192 676.0 862 56.1
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 5.0e-192 675.6 916 48.1
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 4.2e-191 672.5 836 57.2
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 6.1e-190 668.7 866 53.9
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 8.7e-189 664.8 862 50.3
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 8.7e-189 664.8 859 51.9
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.1e-188 664.5 868 54.3
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.5e-188 664.1 877 51.2
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 9.7e-188 661.4 856 53.4
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 8.2e-187 658.3 912 51.8
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 1.1e-186 657.9 892 49.9
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.4e-186 657.5 827 53.3
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 2.4e-186 656.8 831 51.5
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 6.9e-186 655.2 871 54.0
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 1.2e-185 654.4 844 54.5
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.5e-185 654.1 895 48.8
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 7.7e-185 651.7 849 54.8
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 6.5e-184 648.7 870 50.3
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.9e-183 647.1 882 49.1
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 2.1e-182 643.7 861 49.0
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-182 643.3 871 54.4
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.5e-180 637.5 829 54.9
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.8e-178 630.6 905 47.6
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 3.1e-178 629.8 870 52.6
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 4.1e-178 629.4 820 52.0
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 4.1e-178 629.4 875 48.7
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 5.3e-178 629.0 800 55.1
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.0e-177 627.1 811 50.1
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.6e-177 626.7 821 50.7
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 1.3e-176 624.4 811 49.9
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 2.2e-176 623.6 854 49.5
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.5e-176 622.1 840 48.8
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.5e-176 622.1 811 49.7
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.9e-175 620.5 832 53.0
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 5.5e-175 619.0 831 49.3
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 2.7e-174 616.7 864 50.2
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 4.7e-174 615.9 876 48.4
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.0e-173 614.8 865 48.1
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.8e-173 614.0 821 49.1
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.5e-172 610.9 905 47.1
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 2.6e-172 610.1 871 47.3
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 2.6e-169 600.1 967 45.7
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 5.9e-169 599.0 866 52.2
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.7e-168 597.4 875 46.9
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 1.9e-167 594.0 761 56.5
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 9.4e-167 591.7 842 48.9
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 1.6e-166 590.9 851 51.0
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 8.8e-165 585.1 873 45.0
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 7.5e-164 582.0 819 48.4
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 7.5e-164 582.0 942 47.8
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 4.8e-163 579.3 749 52.6
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 5.3e-162 575.9 819 47.9
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 7.0e-162 575.5 879 50.5
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 1.2e-161 574.7 756 53.6
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 2.7e-161 573.5 870 45.5
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 3.5e-161 573.2 868 49.4
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 2.5e-159 567.0 837 46.8
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 8.0e-158 562.0 875 44.8
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 8.0e-158 562.0 868 50.3
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 3.0e-157 560.1 863 49.0
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 8.8e-157 558.5 863 45.4
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 3.4e-156 556.6 817 50.2
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 2.2e-155 553.9 830 48.8
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 2.4e-154 550.4 933 43.4
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 2.0e-153 547.4 833 45.7
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 7.2e-151 538.9 867 44.6
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 9.5e-151 538.5 824 46.0
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.0e-149 535.0 823 48.0
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 3.0e-149 533.5 857 48.3
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 4.0e-149 533.1 824 44.8
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 4.4e-148 529.6 875 48.5
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 1.3e-147 528.1 857 48.0
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 6.3e-147 525.8 872 46.9
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 4.1e-146 523.1 422 66.8
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 4.5e-145 519.6 851 47.2
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 5.9e-145 519.2 838 48.3
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.5e-143 514.6 857 46.8
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 8.9e-141 505.4 819 47.5
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.2e-140 505.0 726 45.5
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 9.8e-132 475.3 847 40.9
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.7e-131 474.6 891 40.2
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 4.1e-130 469.9 731 53.4
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 6.0e-129 466.1 781 45.1
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 6.6e-120 436.0 859 39.6
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 5.6e-119 433.0 889 41.4
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 5.8e-116 422.9 842 41.9
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 9.9e-116 422.2 903 42.3
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.7e-115 421.4 837 38.9
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 4.1e-114 416.8 422 55.5
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 6.0e-105 386.3 418 55.7
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 2.8e-102 377.5 824 39.9
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.0e-96 359.0 585 45.8
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 1.1e-87 328.9 608 41.1
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 7.1e-82 309.7 586 43.2
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 4.3e-79 300.4 530 45.7
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 4.8e-78 297.0 225 67.6
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.1e-69 266.2 536 39.0
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.7e-65 253.8 409 41.8
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 7.9e-65 253.1 386 50.3
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 5.9e-60 236.9 607 39.7
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 9.7e-55 219.5 402 45.3
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.3e-54 219.2 184 64.1
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 5.3e-53 213.8 386 45.1
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 1.2e-52 212.6 219 57.1
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.5e-47 195.7 135 71.9
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 4.7e-41 174.1 139 63.3
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 1.0e-40 172.9 837 30.5
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.2e-28 132.9 161 52.8
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 2.3e-27 128.6 621 28.5
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.0e-27 127.5 97 62.9
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.0e-27 127.5 97 62.9
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.5e-26 125.2 100 64.0
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 5.6e-26 124.0 283 41.7
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.6e-25 121.3 240 33.3
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.1e-21 107.8 243 42.8
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-20 105.1 157 45.2
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-19 102.4 257 52.9
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-18 99.0 247 52.6
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 5.6e-18 97.4 291 39.2
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 8.9e-16 90.1 135 42.2
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.8e-15 87.4 149 35.6
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 9.8e-15 86.7 103 58.3
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-14 85.1 333 29.7
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-13 81.6 150 38.7
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.1e-13 81.3 394 32.5
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 7.0e-13 80.5 151 39.1
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.1e-11 74.3 154 34.4
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.1e-11 74.3 154 34.4
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.6e-10 70.9 149 32.9
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.6e-10 70.9 149 32.9
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.6e-10 70.9 149 32.9
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 2.8e-09 68.6 301 27.9
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.6e-09 68.2 103 42.7
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 4.0e-08 64.7 179 33.0
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 6.8e-08 63.9 39 76.9
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 2.0e-07 62.4 42 69.0
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 3.4e-07 61.6 60 53.3
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.4e-07 61.6 51 64.7
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.5e-07 60.5 50 56.0
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 7.5e-07 60.5 56 55.4
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 2.9e-06 58.5 42 69.0
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 3.7e-06 58.2 60 50.0


User provided reference genes

Program Settings