Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 4.1e-83 311.2 146 100.0
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 1.9e-64 249.2 118 99.2
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 1.3e-44 183.3 112 81.2
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 2.3e-41 172.6 112 75.0
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 1.4e-38 163.3 112 72.3
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 3.2e-35 152.1 72 95.8
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 2.1e-34 149.4 114 67.5
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 2.1e-34 149.4 112 65.2
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 3.6e-34 148.7 112 64.3
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 1.4e-33 146.7 111 64.0
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 2.3e-33 146.0 110 65.5
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 3.0e-33 145.6 114 64.9
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 3.9e-33 145.2 114 66.7
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 3.9e-33 145.2 111 63.1
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 6.7e-33 144.4 110 66.4
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 1.5e-32 143.3 102 69.6
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 1.9e-32 142.9 111 62.2
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 1.9e-32 142.9 111 62.2
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 5.7e-32 141.4 110 62.7
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 7.4e-32 141.0 111 60.4
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 2.2e-31 139.4 104 64.4
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 2.2e-31 139.4 101 64.4
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 2.8e-31 139.0 110 61.8
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 3.7e-31 138.7 101 62.4
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 6.3e-31 137.9 101 61.4
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 6.3e-31 137.9 101 61.4
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 8.2e-31 137.5 113 61.9
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 1.1e-30 137.1 115 59.1
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 1.8e-30 136.3 118 56.8
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 1.8e-30 136.3 114 59.6
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 2.4e-30 136.0 115 59.1
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 4.1e-30 135.2 114 59.6
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 4.1e-30 135.2 114 59.6
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 4.1e-30 135.2 114 59.6
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 5.3e-30 134.8 113 59.3
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 5.3e-30 134.8 113 57.5
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.2e-29 133.7 114 59.6
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 1.2e-29 133.7 114 59.6
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 1.2e-29 133.7 112 58.0
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 1.2e-29 133.7 114 56.1
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.5e-29 133.3 116 59.5
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 2.0e-29 132.9 114 58.8
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 2.0e-29 132.9 108 61.1
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 2.0e-29 132.9 101 60.4
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 2.0e-29 132.9 115 55.7
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 2.6e-29 132.5 115 58.3
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 3.4e-29 132.1 114 58.8
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 3.4e-29 132.1 114 56.1
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.4e-29 132.1 114 56.1
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.4e-29 132.1 114 56.1
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.4e-29 132.1 114 56.1
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.4e-29 132.1 114 56.1
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.4e-29 132.1 114 56.1
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 3.4e-29 132.1 115 58.3
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 4.5e-29 131.7 113 60.2
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 4.5e-29 131.7 114 58.8
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 7.7e-29 131.0 114 58.8
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 7.7e-29 131.0 115 56.5
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 1.0e-28 130.6 115 56.5
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.3e-28 130.2 113 60.2
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.3e-28 130.2 113 60.2
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.3e-28 130.2 115 57.4
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 1.7e-28 129.8 116 56.9
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 1.7e-28 129.8 115 56.5
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 1.7e-28 129.8 115 56.5
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 1.7e-28 129.8 115 57.4
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 1.7e-28 129.8 115 57.4
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 2.2e-28 129.4 115 54.8
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 2.2e-28 129.4 115 57.4
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 2.9e-28 129.0 114 57.9
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 2.9e-28 129.0 114 56.1
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 3.8e-28 128.6 111 59.5
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 3.8e-28 128.6 112 56.2
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 3.8e-28 128.6 115 57.4
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 6.5e-28 127.9 117 54.7
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 8.5e-28 127.5 114 57.0
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 1.1e-27 127.1 116 53.4
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 1.4e-27 126.7 114 57.0
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 1.4e-27 126.7 115 54.8
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 1.9e-27 126.3 114 54.4
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 1.9e-27 126.3 111 56.8
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 1.9e-27 126.3 115 54.8
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 4.2e-27 125.2 115 53.0
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 7.2e-27 124.4 112 55.4
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 9.4e-27 124.0 118 55.9
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 2.1e-26 122.9 114 52.6
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 6.1e-26 121.3 115 55.7
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 7.9e-26 120.9 115 51.3
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 1.4e-25 120.2 65 81.5
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 3.0e-25 119.0 65 81.5
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 3.0e-25 119.0 65 80.0
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 3.9e-25 118.6 65 76.9
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 6.7e-25 117.9 113 54.0
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 5.7e-24 114.8 114 53.5
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 7.4e-24 114.4 101 51.5
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.2e-21 107.1 108 53.7
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 2.0e-21 106.3 106 52.8
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 1.0e-20 104.0 102 52.9
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 5.2e-17 91.7 101 43.6
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 2.6e-16 89.4 101 48.5
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 2.8e-15 85.9 40 87.5
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 3.1e-14 82.4 39 84.6
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 9.1e-14 80.9 48 68.8
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 1.3e-12 77.0 52 67.3
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 3.2e-11 72.4 60 60.0
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 3.6e-10 68.9 46 65.2
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 2.2e-07 59.7 77 46.8


User provided reference genes

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