Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0091311 Helianthus annuus HOM05D000289 ORTHO05D223673 8.3e-51 203.4 100 100.0
HanXRQChr06g0171491 Helianthus annuus HOM05D000289 ORTHO05D000208 6.2e-22 107.5 99 62.6
Lsat_1_v5_gn_3_35581 Lactuca sativa HOM05D000289 ORTHO05D000208 1.3e-14 83.2 102 51.0
HanXRQChr17g0544861 Helianthus annuus HOM05D000289 ORTHO05D000208 4.0e-13 78.2 101 50.5
HanXRQChr17g0544881 Helianthus annuus HOM05D000289 ORTHO05D000208 4.0e-13 78.2 101 50.5
Dinv15653 Davidia involucrata HOM05D000289 ORTHO05D000208 2.6e-12 75.5 101 48.5
Phvul.008G196600 Phaseolus vulgaris HOM05D000289 ORTHO05D000208 3.4e-12 75.1 93 50.5
VMungo0647G1445 Vigna mungo HOM05D000289 ORTHO05D000208 4.5e-12 74.7 93 49.5
Migut.M00113 Erythranthe guttata HOM05D000289 ORTHO05D000208 5.8e-12 74.3 98 49.0
Cfa023024 Carpinus fangiana HOM05D000289 ORTHO05D000208 7.6e-12 73.9 95 48.4
Glyma.02G282400 Glycine max HOM05D000289 ORTHO05D000208 7.6e-12 73.9 93 50.5
MD17G1132800 Malus domestica HOM05D000289 ORTHO05D000208 1.0e-11 73.6 99 50.5
Glyma.14G031900 Glycine max HOM05D000289 ORTHO05D000208 1.7e-11 72.8 93 49.5
Ciclev10032550m.g Citrus clementina HOM05D000289 ORTHO05D000208 2.2e-11 72.4 101 46.5
Nitab4.5_0014487g0010 Nicotiana tabacum HOM05D000289 ORTHO05D000208 2.2e-11 72.4 101 46.5
Duzib147G1028 Durio zibethinus HOM05D000289 ORTHO05D000208 2.9e-11 72.0 98 46.9
ECA246G3534 Erigeron canadensis HOM05D000289 ORTHO05D000208 2.9e-11 72.0 101 48.5
Lj8A99T66 Lonicera japonica HOM05D000289 ORTHO05D000208 2.9e-11 72.0 101 47.5
Peaxi162Scf00047g02228 Petunia axillaris HOM05D000289 ORTHO05D000208 2.9e-11 72.0 101 45.5
Peaxi162Scf00359g01219 Petunia axillaris HOM05D000289 ORTHO05D000208 2.9e-11 72.0 101 46.5
Solyc07g044880.3 Solanum lycopersicum HOM05D000289 ORTHO05D000208 3.8e-11 71.6 92 48.9
Thecc.01G166500 Theobroma cacao HOM05D000289 ORTHO05D000208 3.8e-11 71.6 98 50.0
Sopen07g023440 Solanum pennellii HOM05D000289 ORTHO05D000208 4.9e-11 71.2 92 48.9
Duzib187G1887 Durio zibethinus HOM05D000289 ORTHO05D000208 6.5e-11 70.9 98 49.0
Hma1.2p1_0910F.1_g235860 Hydrangea macrophylla HOM05D000289 ORTHO05D000208 6.5e-11 70.9 101 46.5
CiPaw.04G137100 Carya illinoinensis HOM05D000289 ORTHO05D000208 8.4e-11 70.5 92 47.8
Cc00_g05870 Coffea canephora HOM05D000289 ORTHO05D000208 8.4e-11 70.5 101 47.5
SGA_v2.0_scaffold181G39724 Striga asiatica HOM05D000289 ORTHO05D000208 8.4e-11 70.5 101 45.5
LjContig00049g0027395 Lotus japonicus HOM05D000289 ORTHO05D000208 1.4e-10 69.7 99 41.4
FAN09G3995 Fragaria x ananassa HOM05D000289 ORTHO05D000208 2.5e-10 68.9 95 47.4
Manes.01G131400 Manihot esculenta HOM05D000289 ORTHO05D000208 2.5e-10 68.9 101 44.6
Nitab4.5_0001552g0140 Nicotiana tabacum HOM05D000289 ORTHO05D000208 2.5e-10 68.9 101 44.6
PGSC0003DMG400000932 Solanum tuberosum HOM05D000289 ORTHO05D000208 2.5e-10 68.9 92 47.8
Haze_13606 Corylus avellana HOM05D000289 ORTHO05D000208 3.2e-10 68.6 95 45.3
DCAR_016936 Daucus carota HOM05D000289 ORTHO05D009494 3.2e-10 68.6 101 45.5
Glyma.18G115300 Glycine max HOM05D000289 ORTHO05D000208 3.2e-10 68.6 99 46.5
RcHm_v2.0_Chr2g0152491 Rosa chinensis HOM05D000289 ORTHO05D000208 3.2e-10 68.6 95 47.4
Atru.chr6.2015 Acer truncatum HOM05D000289 ORTHO05D000208 4.2e-10 68.2 92 48.9
Aa31LG3G2840 Aethionema arabicum HOM05D000289 ORTHO05D000208 4.2e-10 68.2 92 43.5
Lalb_Chr10g0106471 Lupinus albus HOM05D000289 ORTHO05D000208 4.2e-10 68.2 93 48.4
Nitab4.5_0003208g0020 Nicotiana tabacum HOM05D000289 ORTHO05D000208 4.2e-10 68.2 101 44.6
Nitab4.5_0007694g0020 Nicotiana tabacum HOM05D000289 ORTHO05D000208 4.2e-10 68.2 101 44.6
Gohir.D10G114600 Gossypium hirsutum HOM05D000289 ORTHO05D000208 5.5e-10 67.8 98 48.0
Gorai.011G126300 Gossypium raimondii HOM05D000289 ORTHO05D000208 5.5e-10 67.8 98 48.0
Gohir.A10G151700 Gossypium hirsutum HOM05D000289 ORTHO05D000208 7.1e-10 67.4 92 47.8
Manes.02G090000 Manihot esculenta HOM05D000289 ORTHO05D000208 7.1e-10 67.4 101 43.6
Potri.002G055600 Populus trichocarpa HOM05D000289 ORTHO05D000208 7.1e-10 67.4 92 47.8
TWI14G0504 Tripterygium wilfordii HOM05D000289 ORTHO05D000208 7.1e-10 67.4 92 48.9
arahy.Tifrunner.gnm1.ann1.A6G0ZJ Arachis hypogaea HOM05D000289 ORTHO05D000208 9.3e-10 67.0 99 42.4
arahy.Tifrunner.gnm1.ann1.XPA4R4 Arachis hypogaea HOM05D000289 ORTHO05D000208 9.3e-10 67.0 99 42.4
COL.COLO4_29890 Corchorus olitorius HOM05D000289 ORTHO05D000208 9.3e-10 67.0 95 48.4
Medtr3g449880 Medicago truncatula HOM05D000289 ORTHO05D000208 9.3e-10 67.0 99 46.5
Lj1A651T47 Lonicera japonica HOM05D000289 ORTHO05D000208 1.2e-09 66.6 92 46.7
Psat2g018320 Pisum sativum HOM05D000289 ORTHO05D000208 1.2e-09 66.6 93 44.1
Glyma.08G304100 Glycine max HOM05D000289 ORTHO05D000208 1.6e-09 66.2 97 46.4
MD09G1146200 Malus domestica HOM05D000289 ORTHO05D000208 1.6e-09 66.2 97 46.4
PSO170G0951 Papaver somniferum HOM05D000289 ORTHO05D000208 1.6e-09 66.2 103 41.7
Potri.005G206800 Populus trichocarpa HOM05D000289 ORTHO05D000208 1.6e-09 66.2 92 44.6
CANSAT64G2330 Cannabis sativa HOM05D000289 ORTHO05D000208 2.1e-09 65.9 92 46.7
SalBow7G0348 Salvia bowleyana HOM05D000289 ORTHO05D000208 2.1e-09 65.9 98 44.9
BcaB04g21219 Brassica carinata HOM05D000671 ORTHO05D000797 2.7e-09 65.5 93 43.0
BcaC09g48104 Brassica carinata HOM05D000671 ORTHO05D000797 2.7e-09 65.5 93 40.9
BolC1t05410H Brassica oleracea HOM05D000289 ORTHO05D000208 2.7e-09 65.5 93 40.9
AUR62015165 Chenopodium quinoa HOM05D000289 ORTHO05D000208 2.7e-09 65.5 100 44.0
FvH4_6g38910 Fragaria vesca HOM05D000289 ORTHO05D000208 2.7e-09 65.5 95 44.2
PSO455G0249 Papaver somniferum HOM05D000289 ORTHO05D000208 2.7e-09 65.5 103 41.7
AL3G21590 Arabidopsis lyrata HOM05D000289 ORTHO05D000208 3.5e-09 65.1 93 45.2
A01p41930 Brassica napus HOM05D000671 ORTHO05D000797 3.5e-09 65.1 93 40.9
BraA01t04262Z Brassica rapa HOM05D000671 ORTHO05D000797 3.5e-09 65.1 93 40.9
Thhalv10021400m.g Eutrema salsugineum HOM05D000289 ORTHO05D000208 3.5e-09 65.1 93 41.9
Medtr5g090340 Medicago truncatula HOM05D000289 ORTHO05D000208 3.5e-09 65.1 93 44.1
Psat5g189200 Pisum sativum HOM05D000289 ORTHO05D000208 3.5e-09 65.1 99 44.4
Sed0014502 Sechium edule HOM05D000289 ORTHO05D000208 3.5e-09 65.1 92 43.5
AT3G10260 Arabidopsis thaliana HOM05D000289 ORTHO05D000208 4.6e-09 64.7 93 44.1
Ca_06234_v3 Cicer arietinum L. HOM05D000289 ORTHO05D000208 4.6e-09 64.7 93 45.2
MELO3C016191.2 Cucumis melo HOM05D000289 ORTHO05D000208 4.6e-09 64.7 93 43.0
CsaV3_4G007510 Cucumis sativus L. HOM05D000289 ORTHO05D000208 6.0e-09 64.3 93 43.0
Sabra02G0045100 Salix brachista HOM05D000289 ORTHO05D000208 6.0e-09 64.3 92 44.6
TPR.G14760 Trifolium pratense HOM05D000289 ORTHO05D000208 6.0e-09 64.3 99 45.5
TWI59G1316 Tripterygium wilfordii HOM05D000289 ORTHO05D000208 6.0e-09 64.3 92 47.8
ClCG07G010810 Citrullus lanatus HOM05D000289 ORTHO05D000208 7.9e-09 63.9 93 41.9
Phvul.006G028000 Phaseolus vulgaris HOM05D000289 ORTHO05D000208 7.9e-09 63.9 102 44.1
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 1.0e-08 63.5 101 41.6
Aqoxy1G01601 Aquilegia oxysepala HOM05D000289 ORTHO05D000208 1.0e-08 63.5 101 43.6
PGR042G2225 Punica granatum HOM05D000289 ORTHO05D000208 1.0e-08 63.5 92 44.6
Solyc12g006290.2 Solanum lycopersicum HOM05D000289 ORTHO05D000208 1.0e-08 63.5 101 41.6
VMungo0540G0615 Vigna mungo HOM05D000289 ORTHO05D000208 1.0e-08 63.5 99 42.4
BcaNung05528 Brassica carinata HOM05D000289 ORTHO05D000208 1.3e-08 63.2 102 38.2
THA.LOC104816411 Tarenaya hassleriana HOM05D000289 ORTHO05D000208 1.3e-08 63.2 97 41.2
TAR627G0981 Trochodendron aralioides HOM05D000289 ORTHO05D000208 1.3e-08 63.2 85 43.5
vmacro08743 Vaccinium macrocarpon HOM05D000289 ORTHO05D000208 1.3e-08 63.2 98 44.9
CSS0036118 Camellia sinensis var. sinensis HOM05D000289 ORTHO05D000208 1.8e-08 62.8 98 43.9
Prupe.3G179500 Prunus persica HOM05D000289 ORTHO05D000208 1.8e-08 62.8 93 45.2
Sabra05G0157300 Salix brachista HOM05D000289 ORTHO05D000208 1.8e-08 62.8 92 43.5
Sopen12g002240 Solanum pennellii HOM05D000289 ORTHO05D000208 2.3e-08 62.4 101 40.6
CAN.G1500.4 Capsicum annuum HOM05D000289 ORTHO05D000208 3.0e-08 62.0 101 40.6
CARHR084740 Cardamine hirsuta HOM05D000289 ORTHO05D000208 3.0e-08 62.0 95 41.1
QL08p045543 Quercus lobata HOM05D000289 ORTHO05D000208 3.0e-08 62.0 98 44.9
THA.LOC104823208 Tarenaya hassleriana HOM05D000289 ORTHO05D000208 3.0e-08 62.0 93 40.9
TPR.G8772 Trifolium pratense HOM05D000289 ORTHO05D000208 3.0e-08 62.0 82 45.1
Carub.0003s0944 Capsella rubella HOM05D000289 ORTHO05D000208 5.1e-08 61.2 93 40.9
Ca_13942_v3 Cicer arietinum L. HOM05D000289 ORTHO05D000208 5.1e-08 61.2 93 43.0
BcaNung05529 Brassica carinata HOM05D000289 ORTHO05D000208 6.7e-08 60.8 83 41.0
EL10Ac9g22868 Beta vulgaris HOM05D000289 ORTHO05D000208 8.7e-08 60.5 101 41.6
A05p38850 Brassica napus HOM05D000289 ORTHO05D000208 8.7e-08 60.5 83 41.0
C05p57890 Brassica napus HOM05D000289 ORTHO05D000208 8.7e-08 60.5 83 41.0
BolC5t34444H Brassica oleracea HOM05D000289 ORTHO05D000208 8.7e-08 60.5 83 41.0
BraA05t22677Z Brassica rapa HOM05D000289 ORTHO05D000208 8.7e-08 60.5 83 41.0
CDE05G2465 Ceratophyllum demersum HOM05D000289 ORTHO05D000208 8.7e-08 60.5 98 40.8
PGR142G1444 Punica granatum HOM05D000289 ORTHO05D000208 1.1e-07 60.1 100 39.0
Rhsim12G0013600 Rhododendron simsii HOM05D000289 ORTHO05D000208 1.1e-07 60.1 110 40.9
PGSC0003DMG400028815 Solanum tuberosum HOM05D000289 ORTHO05D000208 1.1e-07 60.1 101 39.6
GSVIVG01020817001 Vitis vinifera HOM05D000289 ORTHO05D000208 1.1e-07 60.1 101 38.6
Ah.01g013260 Amaranthus hybridus HOM05D000289 ORTHO05D000208 1.5e-07 59.7 100 40.0
ATR1098G022 Amborella trichopoda HOM05D000289 ORTHO05D000208 1.9e-07 59.3 85 43.5
TAR626G1852 Trochodendron aralioides HOM05D000289 ORTHO05D000208 1.9e-07 59.3 101 40.6
EL10Ac3g06376 Beta vulgaris HOM05D000289 ORTHO05D031703 2.5e-07 58.9 102 41.2
DCAR_023038 Daucus carota HOM05D000289 ORTHO05D000208 2.5e-07 58.9 92 42.4
QL04p055886 Quercus lobata HOM05D000289 ORTHO05D000208 7.4e-07 57.4 104 36.5
Eucgr.A02040 Eucalyptus grandis HOM05D000289 ORTHO05D000208 9.6e-07 57.0 85 38.8
Eucgr.H02651 Eucalyptus grandis HOM05D000289 ORTHO05D000208 1.3e-06 56.6 92 40.2
AUR62017617 Chenopodium quinoa HOM05D000289 ORTHO05D000208 1.6e-06 56.2 100 44.0
Oeu007465.1 Olea europaea HOM05D000289 ORTHO05D000208 2.8e-06 55.5 99 40.4
Sabra12G0023900 Salix brachista HOM05D000289 ORTHO05D000208 2.8e-06 55.5 102 37.3
Sed0014640 Sechium edule HOM05D000289 ORTHO05D000208 3.7e-06 55.1 93 39.8
SGA_v2.0_scaffold10G05274 Striga asiatica HOM05D000289 ORTHO05D000208 3.7e-06 55.1 79 39.2
BraA09t37143Z Brassica rapa HOM05D000289 ORTHO05D000208 6.2e-06 54.3 93 37.6
Lj6g0010418 Lotus japonicus HOM05D000289 ORTHO05D000208 6.2e-06 54.3 97 39.2
Aqoxy5G04059 Aquilegia oxysepala HOM05D000289 ORTHO05D000208 8.2e-06 53.9 96 38.5
MSTRG.14107 Avicennia marina HOM05D000289 ORTHO05D000208 8.2e-06 53.9 99 36.4
Gohir.A08G127500 Gossypium hirsutum HOM05D000289 ORTHO05D000208 8.2e-06 53.9 95 36.8
MBI02_g08988_MAGBIO Magnolia biondii HOM05D000289 ORTHO05D000208 8.2e-06 53.9 101 37.6
SEGI_15957 Sequoiadendron giganteum HOM05D000289 ORTHO05D000208 8.2e-06 53.9 81 40.7


User provided reference genes

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