Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0091091 Helianthus annuus HOM05D000156 ORTHO05D001290 6.1e-77 290.8 155 100.0
HanXRQChr13g0420151 Helianthus annuus HOM05D000156 ORTHO05D001290 3.1e-44 182.2 164 67.1
ECA240G0846 Erigeron canadensis HOM05D000156 ORTHO05D001290 5.4e-41 171.4 162 64.8
COL.COLO4_25395 Corchorus olitorius HOM05D000156 ORTHO05D001290 5.3e-28 128.3 171 50.3
ECA240G2258 Erigeron canadensis HOM05D000156 ORTHO05D001290 2.2e-26 122.9 171 50.9
Thecc.09G270500 Theobroma cacao HOM05D000156 ORTHO05D001290 2.2e-26 122.9 171 48.5
Dinv33547 Davidia involucrata HOM05D000156 ORTHO05D001290 2.9e-26 122.5 171 49.1
Lj1A270G22 Lonicera japonica HOM05D000156 ORTHO05D001290 2.9e-26 122.5 184 48.9
Duzib170G0995 Durio zibethinus HOM05D000156 ORTHO05D001290 4.9e-26 121.7 171 50.3
GSVIVG01037598001 Vitis vinifera HOM05D000156 ORTHO05D001290 6.5e-26 121.3 171 49.7
Haze_23580 Corylus avellana HOM05D000156 ORTHO05D001290 1.4e-25 120.2 168 49.4
Cfa010193 Carpinus fangiana HOM05D000156 ORTHO05D001290 1.9e-25 119.8 168 50.0
Ciclev10028475m.g Citrus clementina HOM05D000156 ORTHO05D001290 1.9e-25 119.8 172 47.1
Gohir.A09G100500 Gossypium hirsutum HOM05D000156 ORTHO05D001290 2.5e-25 119.4 171 49.7
Gohir.D09G099900 Gossypium hirsutum HOM05D000156 ORTHO05D001290 2.5e-25 119.4 171 49.1
CSS0015115 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D001290 4.2e-25 118.6 171 50.9
Duzib168G1756 Durio zibethinus HOM05D000156 ORTHO05D001290 4.2e-25 118.6 171 48.0
Dinv18853 Davidia involucrata HOM05D000156 ORTHO05D001290 5.5e-25 118.2 172 49.4
CSS0002489 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D001290 7.1e-25 117.9 171 49.7
Cc01_g07760 Coffea canephora HOM05D000156 ORTHO05D001290 7.1e-25 117.9 183 46.4
Sabra16G0128200 Salix brachista HOM05D000156 ORTHO05D001290 9.3e-25 117.5 171 46.8
Gorai.006G116900 Gossypium raimondii HOM05D000156 ORTHO05D001290 1.2e-24 117.1 171 48.5
Potri.009G015800 Populus trichocarpa HOM05D000156 ORTHO05D001290 1.2e-24 117.1 171 46.8
Prupe.6G146700 Prunus persica HOM05D000156 ORTHO05D001290 1.2e-24 117.1 171 46.8
CAN.G742.30 Capsicum annuum HOM05D000156 ORTHO05D001290 2.1e-24 116.3 182 51.1
HanXRQChr05g0143601 Helianthus annuus HOM05D000156 ORTHO05D001290 2.7e-24 115.9 107 70.1
Atru.chr3.3095 Acer truncatum HOM05D000156 ORTHO05D001290 3.5e-24 115.5 171 46.8
CANSAT54G2843 Cannabis sativa HOM05D000156 ORTHO05D001290 4.6e-24 115.2 171 47.4
Nitab4.5_0001606g0010 Nicotiana tabacum HOM05D000156 ORTHO05D001290 6.0e-24 114.8 182 48.9
Peaxi162Scf00429g00016 Petunia axillaris HOM05D000156 ORTHO05D001290 2.3e-23 112.8 182 48.9
Gorai.009G082100 Gossypium raimondii HOM05D000156 ORTHO05D001290 3.0e-23 112.5 171 47.4
TWI79G0049 Tripterygium wilfordii HOM05D000156 ORTHO05D001290 3.0e-23 112.5 171 46.2
Gohir.A05G077600 Gossypium hirsutum HOM05D000156 ORTHO05D001290 5.1e-23 111.7 171 47.4
HanXRQChr03g0091161 Helianthus annuus HOM05D000156 ORTHO05D001290 6.7e-23 111.3 161 49.7
Solyc11g071840.2 Solanum lycopersicum HOM05D000156 ORTHO05D001290 6.7e-23 111.3 182 47.8
CiPaw.14G093200 Carya illinoinensis HOM05D000156 ORTHO05D001290 8.7e-23 110.9 171 46.8
MD11G1174600 Malus domestica HOM05D000156 ORTHO05D001290 8.7e-23 110.9 171 46.8
Nitab4.5_0001957g0040 Nicotiana tabacum HOM05D000156 ORTHO05D001290 8.7e-23 110.9 182 45.6
Sabra09G0009800 Salix brachista HOM05D000156 ORTHO05D001290 8.7e-23 110.9 171 45.6
Eucgr.J00581 Eucalyptus grandis HOM05D000156 ORTHO05D001290 1.5e-22 110.2 171 47.4
Gohir.D05G080400 Gossypium hirsutum HOM05D000156 ORTHO05D001290 1.5e-22 110.2 171 46.8
Potri.001G215200 Populus trichocarpa HOM05D000156 ORTHO05D001290 1.9e-22 109.8 171 46.2
MD03G1158100 Malus domestica HOM05D000156 ORTHO05D001290 2.5e-22 109.4 171 43.9
Rhsim13G0197400 Rhododendron simsii HOM05D000156 ORTHO05D001290 2.5e-22 109.4 171 43.9
TAR633G1127 Trochodendron aralioides HOM05D000156 ORTHO05D001290 2.5e-22 109.4 172 44.8
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 3.3e-22 109.0 171 48.5
QL01p019319 Quercus lobata HOM05D000156 ORTHO05D001290 3.3e-22 109.0 171 45.6
Sopen11g029510 Solanum pennellii HOM05D000156 ORTHO05D001290 4.3e-22 108.6 182 49.5
Actinidia07285 Actinidia chinensis HOM05D000156 ORTHO05D001290 5.7e-22 108.2 171 47.4
Actinidia24261 Actinidia chinensis HOM05D000156 ORTHO05D001290 5.7e-22 108.2 172 45.9
Oeu009035.1 Olea europaea HOM05D000156 ORTHO05D001290 5.7e-22 108.2 182 45.6
Rhsim01G0200600 Rhododendron simsii HOM05D000156 ORTHO05D001290 7.4e-22 107.8 171 46.2
RcHm_v2.0_Chr5g0048991 Rosa chinensis HOM05D000156 ORTHO05D001290 4.8e-21 105.1 171 45.6
Hma1.2p1_1477F.1_g285830 Hydrangea macrophylla HOM05D000156 ORTHO05D001290 6.2e-21 104.8 163 46.0
Hma1.2p1_3018F.1_g331700 Hydrangea macrophylla HOM05D000156 ORTHO05D001290 6.2e-21 104.8 163 46.0
Migut.N02444 Erythranthe guttata HOM05D000156 ORTHO05D001290 1.4e-20 103.6 169 45.6
Oeu031451.1 Olea europaea HOM05D000156 ORTHO05D001290 1.4e-20 103.6 182 46.2
Cpa.g.sc103.23 Carica papaya HOM05D000156 ORTHO05D001290 2.4e-20 102.8 159 44.7
Manes.11G099600 Manihot esculenta HOM05D000156 ORTHO05D001290 4.0e-20 102.1 171 43.9
PGR119G0657 Punica granatum HOM05D000156 ORTHO05D001290 1.2e-19 100.5 171 44.4
TAR636G2981 Trochodendron aralioides HOM05D000156 ORTHO05D001290 1.2e-19 100.5 172 42.4
FvH4_3g26200 Fragaria vesca HOM05D000156 ORTHO05D001290 1.5e-19 100.1 170 42.4
Glyma.12G189900 Glycine max HOM05D000156 ORTHO05D001290 1.5e-19 100.1 171 40.9
Nn2g14357 Nelumbo nucifera HOM05D000156 ORTHO05D001290 2.0e-19 99.8 161 45.3
FAN21G0942 Fragaria x ananassa HOM05D000156 ORTHO05D001290 3.4e-19 99.0 170 42.4
Nn6g34627 Nelumbo nucifera HOM05D000156 ORTHO05D001290 3.4e-19 99.0 172 44.8
Glyma.09G177200 Glycine max HOM05D000156 ORTHO05D001290 4.5e-19 98.6 172 43.0
MSTRG.17678 Avicennia marina HOM05D000156 ORTHO05D001290 7.6e-19 97.8 178 43.8
AL3G36400 Arabidopsis lyrata HOM05D000156 ORTHO05D001290 1.3e-18 97.1 171 41.5
AT3G22190 Arabidopsis thaliana HOM05D000156 ORTHO05D001290 1.3e-18 97.1 171 41.5
BcaB06g26321 Brassica carinata HOM05D000156 ORTHO05D001290 1.7e-18 96.7 173 42.8
CsaV3_1G043970 Cucumis sativus L. HOM05D000156 ORTHO05D001290 2.2e-18 96.3 171 42.1
Lalb_Chr03g0028481 Lupinus albus HOM05D000156 ORTHO05D001290 2.2e-18 96.3 173 42.8
Psat7g203840 Pisum sativum HOM05D000156 ORTHO05D001290 2.2e-18 96.3 170 44.1
Sed0000943 Sechium edule HOM05D000156 ORTHO05D001290 2.9e-18 95.9 174 44.3
unitig_27.g25125 Utricularia gibba HOM05D000156 ORTHO05D001290 2.9e-18 95.9 169 43.2
MELO3C009991.2 Cucumis melo HOM05D000156 ORTHO05D001290 3.8e-18 95.5 171 42.1
Sc12g0000350 Simmondsia chinensis HOM05D000156 ORTHO05D001290 3.8e-18 95.5 170 44.1
ClCG03G011960 Citrullus lanatus HOM05D000156 ORTHO05D001290 5.0e-18 95.1 171 42.7
DCAR_018751 Daucus carota HOM05D000156 ORTHO05D001290 5.0e-18 95.1 172 43.6
Glyma.13G311700 Glycine max HOM05D000156 ORTHO05D001290 5.0e-18 95.1 175 41.1
Medtr4g050480 Medicago truncatula HOM05D000156 ORTHO05D001290 5.0e-18 95.1 170 42.4
SalBow3G2908 Salvia bowleyana HOM05D000156 ORTHO05D001290 5.0e-18 95.1 179 43.0
THA.LOC104816973 Tarenaya hassleriana HOM05D000156 ORTHO05D001290 5.0e-18 95.1 169 42.6
Eucgr.B03811 Eucalyptus grandis HOM05D000156 ORTHO05D001290 6.5e-18 94.7 172 43.6
TPR.G4660 Trifolium pratense HOM05D000156 ORTHO05D001290 6.5e-18 94.7 170 41.8
Sed0020240 Sechium edule HOM05D000156 ORTHO05D001290 8.4e-18 94.4 172 43.0
MBI05_g10659_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D001290 1.4e-17 93.6 164 44.5
Phvul.005G118200 Phaseolus vulgaris HOM05D000156 ORTHO05D001290 3.2e-17 92.4 171 40.9
SGA_v2.0_scaffold92G28133 Striga asiatica HOM05D000156 ORTHO05D001290 3.2e-17 92.4 173 43.9
VMungo1080G1212 Vigna mungo HOM05D000156 ORTHO05D001290 4.2e-17 92.0 171 40.9
MSTRG.12391 Avicennia marina HOM05D000156 ORTHO05D001290 7.1e-17 91.3 181 41.4
Lalb_Chr01g0005841 Lupinus albus HOM05D000156 ORTHO05D001290 1.2e-16 90.5 175 41.1
DCAR_015494 Daucus carota HOM05D000156 ORTHO05D001290 2.1e-16 89.7 170 43.5
TAR623G0493 Trochodendron aralioides HOM05D000156 ORTHO05D001290 3.5e-16 89.0 171 39.8
Aa31LG8G8750 Aethionema arabicum HOM05D000156 ORTHO05D001290 4.6e-16 88.6 167 41.3
BcaC05g28097 Brassica carinata HOM05D000156 ORTHO05D001290 4.6e-16 88.6 174 41.4
C05p41230 Brassica napus HOM05D000156 ORTHO05D001290 4.6e-16 88.6 174 41.4
BolC5t32864H Brassica oleracea HOM05D000156 ORTHO05D001290 4.6e-16 88.6 174 41.4
arahy.Tifrunner.gnm1.ann1.IB4S38 Arachis hypogaea HOM05D000178 ORTHO05D001740 6.1e-16 88.2 170 41.2
Carub.0003s2236 Capsella rubella HOM05D000156 ORTHO05D001290 6.1e-16 88.2 167 41.3
CDE07G1322 Ceratophyllum demersum HOM05D000156 ORTHO05D001290 6.1e-16 88.2 168 42.3
CDE04G1548 Ceratophyllum demersum HOM05D000156 ORTHO05D001290 2.3e-15 86.3 162 43.2
AUR62020216 Chenopodium quinoa HOM05D000156 ORTHO05D001290 2.3e-15 86.3 172 40.1
SGA_v2.0_scaffold268G46208 Striga asiatica HOM05D000156 ORTHO05D001290 3.0e-15 85.9 180 39.4
A05p26640 Brassica napus HOM05D000156 ORTHO05D001290 3.9e-15 85.5 173 40.5
FAN16G3301 Fragaria x ananassa HOM05D000156 ORTHO05D001290 3.9e-15 85.5 163 39.9
BraA05t21540Z Brassica rapa HOM05D000156 ORTHO05D001290 5.1e-15 85.1 173 40.5
PGSC0003DMG400003006 Solanum tuberosum HOM05D000156 ORTHO05D001290 5.1e-15 85.1 144 49.3
Ah.15g098890 Amaranthus hybridus HOM05D000156 ORTHO05D001290 6.7e-15 84.7 172 41.3
CARHR098080 Cardamine hirsuta HOM05D000156 ORTHO05D001290 6.7e-15 84.7 164 40.2
FAN11G3060 Fragaria x ananassa HOM05D000156 ORTHO05D001290 6.7e-15 84.7 162 39.5
FAN25G2929 Fragaria x ananassa HOM05D000156 ORTHO05D001290 6.7e-15 84.7 162 39.5
Lj3g0020313 Lotus japonicus HOM05D000156 ORTHO05D001290 6.7e-15 84.7 129 43.4
Sp3g19990 Schrenkiella parvula HOM05D000156 ORTHO05D001290 1.1e-14 84.0 172 40.1
Hund20956 Selenicereus undatus HOM05D000156 ORTHO05D001290 1.9e-14 83.2 167 40.7
AUR62001566 Chenopodium quinoa HOM05D000156 ORTHO05D001290 3.3e-14 82.4 172 39.5
Thhalv10020807m.g Eutrema salsugineum HOM05D000156 ORTHO05D001290 1.3e-13 80.5 169 40.2
PSO384G0393 Papaver somniferum HOM05D000156 ORTHO05D001290 2.2e-13 79.7 168 41.1
PSO339G2191 Papaver somniferum HOM05D000156 ORTHO05D001290 4.8e-13 78.6 168 41.7
vmacro14317 Vaccinium macrocarpon HOM05D000156 ORTHO05D001290 1.1e-12 77.4 158 43.0
BcaB04g20538 Brassica carinata HOM05D000156 ORTHO05D001290 2.4e-12 76.3 168 39.3
Ca_02971_v3 Cicer arietinum L. HOM05D000156 ORTHO05D001290 4.1e-12 75.5 108 43.5
BcaC09g49156 Brassica carinata HOM05D000156 ORTHO05D001290 6.9e-12 74.7 169 37.9
C01p42040 Brassica napus HOM05D000156 ORTHO05D001290 6.9e-12 74.7 169 37.9
unitig_699.g19458 Utricularia gibba HOM05D000156 ORTHO05D001290 9.0e-12 74.3 169 37.9
arahy.Tifrunner.gnm1.ann1.H7NGII Arachis hypogaea HOM05D000156 ORTHO05D001290 3.4e-11 72.4 168 37.5
HPP92_012158 Vanilla planifolia HOM05D000156 ORTHO05D001290 4.5e-11 72.0 167 35.9
BolC1t04163H Brassica oleracea HOM05D000156 ORTHO05D001290 5.9e-11 71.6 168 36.9
BcaC01g03461 Brassica carinata HOM05D000156 ORTHO05D001290 3.8e-10 68.9 169 39.6
BolC3t17502H Brassica oleracea HOM05D000156 ORTHO05D001290 3.8e-10 68.9 169 39.6
Migut.D02458 Erythranthe guttata HOM05D000156 ORTHO05D001290 3.8e-10 68.9 167 36.5
ATR0697G026 Amborella trichopoda HOM05D000156 ORTHO05D001290 5.0e-10 68.6 175 34.9
Hund18801 Selenicereus undatus HOM05D000156 ORTHO05D001290 1.1e-09 67.4 161 36.0
EL10Ac7g16282 Beta vulgaris HOM05D000156 ORTHO05D001290 1.4e-09 67.0 172 37.2
C03p52230 Brassica napus HOM05D000156 ORTHO05D001290 3.2e-09 65.9 169 38.5
A03p42620 Brassica napus HOM05D000156 ORTHO05D001290 4.2e-09 65.5 155 37.4
Os12g0619000 Oryza sativa ssp. japonica HOM05D000156 ORTHO05D001290 5.5e-09 65.1 174 32.8
BraA03t13410Z Brassica rapa HOM05D000156 ORTHO05D001290 9.4e-09 64.3 156 37.8
Aqoxy1G00628 Aquilegia oxysepala HOM05D000156 ORTHO05D001290 1.2e-08 63.9 171 35.7
Zm00001eb060040 Zea mays HOM05D000156 ORTHO05D001290 3.6e-08 62.4 153 39.9
Lsat_1_v5_gn_3_114660 Lactuca sativa HOM05D000156 ORTHO05D001290 6.1e-08 61.6 167 34.7
SEGI_37286 Sequoiadendron giganteum HOM05D000156 ORTHO05D001290 6.1e-08 61.6 192 34.9
PSO339G3726 Papaver somniferum HOM05D000156 ORTHO05D001290 5.1e-07 58.5 147 35.4
PSO384G4756 Papaver somniferum HOM05D000156 ORTHO05D001290 5.1e-07 58.5 147 35.4
Os03g0648300 Oryza sativa ssp. japonica HOM05D000156 ORTHO05D001290 8.8e-07 57.8 163 33.7
Os03g0787200 Oryza sativa ssp. japonica HOM05D000156 ORTHO05D001290 1.1e-06 57.4 166 34.3
Zm00001eb213320 Zea mays HOM05D000156 ORTHO05D001290 2.0e-06 56.6 116 37.1
HPP92_013940 Vanilla planifolia HOM05D000156 ORTHO05D001290 3.3e-06 55.8 68 45.6


User provided reference genes

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