Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 1.9e-130 469.2 238 100.0
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 8.2e-113 410.6 232 89.2
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 3.8e-110 401.7 235 87.2
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 3.4e-95 352.1 237 73.8
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 3.4e-95 352.1 237 73.8
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 1.3e-94 350.1 225 75.6
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 5.0e-94 348.2 230 76.1
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 2.5e-93 345.9 234 74.4
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 1.2e-92 343.6 231 73.6
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 2.1e-92 342.8 225 73.8
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 5.2e-91 338.2 230 73.9
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 2.0e-90 336.3 229 72.5
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 2.6e-90 335.9 228 72.8
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 4.4e-90 335.1 229 72.9
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 9.7e-90 334.0 229 72.5
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 1.3e-89 333.6 233 71.7
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 2.6e-87 325.9 229 71.2
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 1.0e-86 323.9 236 70.3
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 2.2e-86 322.8 236 70.3
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 3.8e-86 322.0 228 71.9
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 3.8e-86 322.0 227 69.6
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 6.5e-86 321.2 227 69.6
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 7.2e-85 317.8 234 70.5
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 2.7e-84 315.8 230 70.0
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 4.7e-84 315.1 237 67.1
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 1.0e-83 313.9 237 67.5
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 2.3e-83 312.8 237 67.1
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 2.3e-83 312.8 221 70.6
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 4.0e-83 312.0 237 67.1
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 1.2e-82 310.5 237 66.7
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 2.0e-82 309.7 234 68.4
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 2.6e-82 309.3 230 65.7
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 5.7e-82 308.1 232 67.2
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 9.7e-82 307.4 234 65.0
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 9.7e-82 307.4 230 66.1
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 2.8e-81 305.8 228 67.5
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 3.7e-81 305.4 271 61.3
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 1.8e-80 303.1 231 67.5
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 3.1e-80 302.4 228 66.7
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 4.1e-80 302.0 232 65.9
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 4.1e-80 302.0 223 68.2
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 5.3e-80 301.6 232 67.7
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 7.0e-80 301.2 230 66.5
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 9.1e-80 300.8 234 65.4
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 1.6e-79 300.1 223 66.8
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 3.5e-79 298.9 231 66.2
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 4.5e-79 298.5 231 65.4
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 4.5e-79 298.5 231 65.4
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 7.7e-79 297.7 227 64.3
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 1.3e-78 297.0 224 66.5
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 1.7e-78 296.6 231 65.8
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 1.7e-78 296.6 227 65.6
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 2.9e-78 295.8 227 66.5
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 3.8e-78 295.4 231 65.4
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 5.0e-78 295.0 228 66.7
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 5.0e-78 295.0 226 66.4
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 6.5e-78 294.7 227 65.6
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 8.5e-78 294.3 231 65.4
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 5.5e-77 291.6 226 63.3
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 7.2e-77 291.2 231 64.1
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.2e-76 290.4 255 61.6
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 2.1e-76 289.7 228 65.4
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 2.1e-76 289.7 224 64.3
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 2.7e-76 289.3 210 71.4
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 2.7e-76 289.3 230 63.5
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 4.7e-76 288.5 227 64.3
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 6.1e-76 288.1 235 65.1
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 5.2e-75 285.0 237 60.3
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 6.8e-75 284.6 234 62.4
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 4.4e-74 282.0 232 62.5
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 5.7e-74 281.6 235 60.9
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 1.3e-73 280.4 232 60.8
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 1.3e-73 280.4 237 60.8
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 1.3e-73 280.4 237 60.8
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.7e-73 280.0 237 61.6
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 1.7e-73 280.0 302 53.0
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 2.2e-73 279.6 237 59.9
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 2.8e-73 279.3 237 60.8
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.8e-73 279.3 237 60.8
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 2.8e-73 279.3 236 61.9
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 3.7e-73 278.9 235 59.6
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 4.8e-73 278.5 237 60.3
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 8.3e-73 277.7 230 58.7
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 1.1e-72 277.3 237 59.9
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 1.1e-72 277.3 230 61.7
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.4e-72 276.9 237 59.9
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.4e-72 276.9 237 59.9
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 1.4e-72 276.9 237 60.3
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 2.4e-72 276.2 237 59.9
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 2.4e-72 276.2 237 59.9
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 3.1e-72 275.8 213 65.7
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 3.1e-72 275.8 229 59.8
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 4.1e-72 275.4 237 59.9
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 4.1e-72 275.4 237 59.9
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 7.0e-72 274.6 237 59.9
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 7.0e-72 274.6 232 59.1
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 9.1e-72 274.2 237 59.5
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 4.5e-71 271.9 176 76.1
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 2.1e-68 263.1 238 58.4
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 4.7e-68 261.9 235 58.7
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 4.9e-65 251.9 176 70.5
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.4e-64 250.4 223 59.2
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 1.2e-63 247.3 234 56.8
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.6e-63 246.9 234 56.8
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.3e-62 243.8 235 56.6
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 2.5e-61 239.6 189 63.5
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 2.5e-61 239.6 234 55.6
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 2.5e-61 239.6 225 54.7
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 4.7e-60 235.3 223 57.4
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 2.3e-59 233.0 229 52.0
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 3.1e-59 232.6 233 54.1
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 2.9e-57 226.1 231 48.1
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 2.3e-54 216.5 191 62.3
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 4.4e-50 202.2 149 68.5
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 2.2e-49 199.9 204 52.0
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 1.2e-47 194.1 138 69.6
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.0e-46 191.0 137 70.1
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 1.3e-46 190.7 227 42.3
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 2.1e-44 183.3 182 48.4
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 2.4e-40 169.9 136 62.5
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 6.6e-38 161.8 131 60.3
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 1.7e-33 147.1 227 37.4
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 6.6e-30 135.2 223 34.5
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 1.6e-20 104.0 79 63.3
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 1.6e-20 104.0 79 63.3
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 5.4e-16 89.0 65 70.8
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 1.6e-15 87.4 65 69.2
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 2.3e-14 83.6 66 62.1
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.1e-13 81.3 61 65.6
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 1.1e-08 64.7 50 58.0


User provided reference genes

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