Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0090811 Helianthus annuus HOM05D000162 ORTHO05D003288 1.7e-58 230.7 345 100.0
HanXRQChr04g0095081 Helianthus annuus HOM05D000162 ORTHO05D000090 2.4e-28 130.6 69 92.8
HanXRQChr03g0091301 Helianthus annuus HOM05D000162 ORTHO05D003288 5.3e-28 129.4 73 89.0
HanXRQChr13g0415191 Helianthus annuus HOM05D022346 ORTHO05D003288 5.3e-28 129.4 85 76.5
HanXRQChr04g0104291 Helianthus annuus HOM05D000162 ORTHO05D000090 1.7e-26 124.4 63 98.4
HanXRQChr03g0091181 Helianthus annuus HOM05D000162 ORTHO05D003288 2.9e-26 123.6 62 98.4
HanXRQChr03g0091271 Helianthus annuus HOM05D000162 ORTHO05D000090 9.3e-25 118.6 63 92.1
HanXRQChr06g0180941 Helianthus annuus HOM05D000162 ORTHO05D000090 2.7e-24 117.1 63 92.1
HanXRQChr06g0180921 Helianthus annuus HOM05D000162 ORTHO05D003288 1.5e-22 111.3 66 81.8
ECA236G5119 Erigeron canadensis HOM05D000744 ORTHO05D000332 5.6e-22 109.4 101 58.4
HanXRQChr13g0420261 Helianthus annuus HOM05D022346 ORTHO05D003288 2.0e-19 100.9 80 66.2
HanXRQChr13g0410221 Helianthus annuus HOM05D000162 ORTHO05D003288 3.4e-19 100.1 63 87.3
HanXRQChr06g0180981 Helianthus annuus HOM05D000162 ORTHO05D000090 1.0e-18 98.6 50 94.0
HanXRQChr03g0090911 Helianthus annuus HOM05D000162 ORTHO05D000090 4.9e-18 96.3 48 93.8
HanXRQChr03g0091731 Helianthus annuus HOM05D000162 ORTHO05D000090 4.9e-18 96.3 49 93.9
HanXRQChr15g0491421 Helianthus annuus HOM05D022346 ORTHO05D003288 6.5e-18 95.9 82 62.2
HanXRQChr03g0090871 Helianthus annuus HOM05D000162 ORTHO05D000090 1.4e-17 94.7 49 91.8
HanXRQChr03g0090971 Helianthus annuus HOM05D000162 ORTHO05D000090 9.3e-17 92.0 48 89.6
HanXRQChr03g0091291 Helianthus annuus HOM05D000162 ORTHO05D000090 2.7e-16 90.5 47 93.6
HanXRQChr03g0090891 Helianthus annuus HOM05D000162 ORTHO05D000090 4.6e-16 89.7 47 91.5
HanXRQChr03g0091251 Helianthus annuus HOM05D000162 ORTHO05D000090 4.6e-16 89.7 47 91.5
HanXRQChr03g0091321 Helianthus annuus HOM05D000162 ORTHO05D000090 4.6e-16 89.7 49 87.8
HanXRQChr03g0091221 Helianthus annuus HOM05D000162 ORTHO05D000090 6.0e-16 89.4 47 91.5
HanXRQChr06g0180961 Helianthus annuus HOM05D000162 ORTHO05D000090 6.0e-16 89.4 47 91.5
HanXRQChr03g0090981 Helianthus annuus HOM05D000162 ORTHO05D000090 7.9e-16 89.0 47 89.4
HanXRQChr03g0091331 Helianthus annuus HOM05D000162 ORTHO05D000090 1.3e-15 88.2 47 91.5
HanXRQChr03g0091741 Helianthus annuus HOM05D000162 ORTHO05D000090 1.3e-15 88.2 47 91.5
HanXRQChr03g0090791 Helianthus annuus HOM05D000162 ORTHO05D000090 1.8e-15 87.8 46 93.5
HanXRQChr03g0090831 Helianthus annuus HOM05D000162 ORTHO05D000090 1.8e-15 87.8 47 89.4
HanXRQChr03g0090881 Helianthus annuus HOM05D000162 ORTHO05D000090 2.3e-15 87.4 45 93.3
HanXRQChr03g0091721 Helianthus annuus HOM05D000162 ORTHO05D000090 3.0e-15 87.0 49 85.7
HanXRQChr06g0180871 Helianthus annuus HOM05D000162 ORTHO05D000090 3.0e-15 87.0 47 87.2
HanXRQChr09g0252881 Helianthus annuus HOM05D000162 ORTHO05D000090 3.0e-15 87.0 46 91.3
ECA240G3332 Erigeron canadensis HOM05D000162 ORTHO05D003288 6.7e-15 85.9 65 69.2
HanXRQChr03g0090921 Helianthus annuus HOM05D000162 ORTHO05D003288 6.7e-15 85.9 45 93.3
ECA232G0742 Erigeron canadensis HOM05D022346 ORTHO05D003288 8.7e-15 85.5 62 69.4
HanXRQChr03g0090771 Helianthus annuus HOM05D000162 ORTHO05D000090 1.5e-14 84.7 45 91.1
HanXRQChr03g0091281 Helianthus annuus HOM05D000162 ORTHO05D000090 1.9e-14 84.3 46 87.0
HanXRQChr01g0021861 Helianthus annuus HOM05D000162 ORTHO05D000090 4.3e-14 83.2 47 85.1
HanXRQChr03g0091351 Helianthus annuus HOM05D000162 ORTHO05D000090 1.6e-13 81.3 44 90.9
ECA240G3806 Erigeron canadensis HOM05D000162 ORTHO05D003288 2.8e-13 80.5 60 65.0
Lsat_1_v5_gn_0_17660 Lactuca sativa HOM05D000162 ORTHO05D000090 6.3e-13 79.3 75 52.0
HanXRQChr01g0021851 Helianthus annuus HOM05D000162 ORTHO05D003288 8.2e-13 79.0 39 94.9
HanXRQChr03g0083291 Helianthus annuus HOM05D000162 ORTHO05D000090 8.2e-13 79.0 54 74.1
HanXRQChr03g0090861 Helianthus annuus HOM05D000162 ORTHO05D000090 1.1e-12 78.6 41 90.2
HanXRQChr13g0420301 Helianthus annuus HOM05D000162 ORTHO05D000090 1.1e-12 78.6 59 64.4
HanXRQChr03g0091341 Helianthus annuus HOM05D000162 ORTHO05D000090 1.4e-12 78.2 47 80.9
ECA240G4444 Erigeron canadensis HOM05D000162 ORTHO05D003288 5.3e-12 76.3 56 67.9
HanXRQChr15g0491411 Helianthus annuus HOM05D000162 ORTHO05D016273 7.6e-11 72.4 43 79.1
HanXRQChr03g0090781 Helianthus annuus HOM05D000162 ORTHO05D000090 1.7e-10 71.2 43 81.4
HanXRQChr04g0104281 Helianthus annuus HOM05D016049 ORTHO05D019812 2.2e-10 70.9 43 79.1
HanXRQChr13g0420271 Helianthus annuus HOM05D016049 ORTHO05D003288 2.9e-10 70.5 48 72.9
HanXRQChr13g0420281 Helianthus annuus HOM05D000162 ORTHO05D000090 2.9e-10 70.5 48 72.9
HanXRQChr13g0420881 Helianthus annuus HOM05D000162 ORTHO05D000090 5.0e-10 69.7 51 74.5
HanXRQChr13g0420121 Helianthus annuus HOM05D000162 ORTHO05D000090 2.5e-09 67.4 47 74.5
Cc07_g18940 Coffea canephora HOM05D000162 ORTHO05D000090 5.5e-09 66.2 81 44.4
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 1.2e-08 65.1 79 40.5
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 1.2e-08 65.1 79 40.5
ECA240G3374 Erigeron canadensis HOM05D000102 ORTHO05D000090 1.2e-08 65.1 42 66.7
Rhsim02G0051600 Rhododendron simsii HOM05D026694 ORTHO05D003288 2.1e-08 64.3 79 36.7
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 2.7e-08 63.9 79 40.5
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.6e-08 63.5 89 38.2
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 4.6e-08 63.2 79 39.2
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 4.6e-08 63.2 79 39.2
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 1.8e-07 61.2 90 35.6
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 1.8e-07 61.2 82 36.6
ECA240G0231 Erigeron canadensis HOM05D000162 ORTHO05D000090 2.3e-07 60.8 43 65.1
HanXRQChr13g0420371 Helianthus annuus HOM05D000162 ORTHO05D000090 2.3e-07 60.8 40 72.5
AUR62000354 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.0e-07 60.5 76 39.5
ECA240G4389 Erigeron canadensis HOM05D000162 ORTHO05D000090 3.0e-07 60.5 41 73.2
Migut.G01185 Erythranthe guttata HOM05D022251 ORTHO05D003288 3.9e-07 60.1 74 39.2
HanXRQChr03g0083311 Helianthus annuus HOM05D000162 ORTHO05D016663 5.1e-07 59.7 43 65.1
FAN25G3245 Fragaria x ananassa HOM05D009519 ORTHO05D010307 6.7e-07 59.3 36 66.7
CSS0026088 Camellia sinensis var. sinensis HOM05D009709 ORTHO05D003288 1.1e-06 58.5 84 36.9
HanXRQChr13g0418861 Helianthus annuus HOM05D022346 ORTHO05D003288 1.1e-06 58.5 88 37.5
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 1.1e-06 58.5 72 34.7
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.5e-06 58.2 79 36.7
ECA240G2343 Erigeron canadensis HOM05D000162 ORTHO05D020421 1.5e-06 58.2 43 62.8
SalBow3G2074 Salvia bowleyana HOM05D000162 ORTHO05D000090 1.9e-06 57.8 84 32.1
ECA232G3779 Erigeron canadensis HOM05D001482 ORTHO05D001499 2.5e-06 57.4 42 64.3
SalBow1G0480 Salvia bowleyana HOM05D000162 ORTHO05D000090 2.5e-06 57.4 73 35.6
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 3.3e-06 57.0 79 35.4
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 3.3e-06 57.0 79 35.4
FAN25G2751 Fragaria x ananassa HOM05D009709 ORTHO05D003288 3.3e-06 57.0 68 39.7
HanXRQChr08g0216891 Helianthus annuus HOM05D016049 ORTHO05D012019 3.3e-06 57.0 40 60.0
SalBow3G1670 Salvia bowleyana HOM05D022251 ORTHO05D003288 3.3e-06 57.0 53 49.1
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 4.3e-06 56.6 79 35.4
Migut.G01184 Erythranthe guttata HOM05D000162 ORTHO05D000090 4.3e-06 56.6 59 42.4
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 4.3e-06 56.6 68 35.3
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 5.7e-06 56.2 79 36.7
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 5.7e-06 56.2 79 36.7
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 5.7e-06 56.2 77 31.2
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 7.4e-06 55.8 80 37.5
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 7.4e-06 55.8 68 36.8
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 7.4e-06 55.8 68 36.8
HanXRQChr13g0418841 Helianthus annuus HOM05D000162 ORTHO05D000090 7.4e-06 55.8 36 75.0
RcHm_v2.0_Chr5g0076251 Rosa chinensis HOM05D009519 ORTHO05D010307 7.4e-06 55.8 36 58.3
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.7e-06 55.5 69 37.7
Migut.A01141 Erythranthe guttata HOM05D009519 ORTHO05D010307 9.7e-06 55.5 40 57.5
HanXRQChr13g0418851 Helianthus annuus HOM05D000162 ORTHO05D000090 9.7e-06 55.5 43 62.8
SalBow1G7785 Salvia bowleyana HOM05D000162 ORTHO05D000090 9.7e-06 55.5 74 32.4


User provided reference genes

Program Settings