Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 0.0e+00 1448.3 790 100.0
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 4.5e-240 835.1 814 59.5
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 4.5e-184 649.0 799 51.6
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 4.3e-110 403.3 834 36.5
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 8.2e-101 372.5 798 38.0
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 4.5e-99 366.7 799 36.2
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 5.0e-98 363.2 768 37.1
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 8.8e-95 352.4 800 34.4
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.4e-92 344.4 820 35.5
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 3.1e-92 344.0 793 34.9
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 6.9e-92 342.8 796 35.3
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 5.9e-91 339.7 806 35.5
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 3.8e-90 337.0 808 35.1
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 9.4e-89 332.4 807 34.4
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 4.7e-88 330.1 796 33.7
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.1e-86 325.5 819 33.7
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 2.6e-86 324.3 834 34.4
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 8.2e-85 319.3 819 33.8
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.1e-84 318.9 892 32.4
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.0e-83 314.7 795 33.2
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 4.5e-83 313.5 800 32.6
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 5.9e-83 313.2 793 33.7
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 2.2e-82 311.2 823 33.2
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 3.8e-82 310.5 814 32.4
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 2.5e-81 307.8 793 33.9
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 2.7e-80 304.3 796 33.7
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.3e-79 301.2 802 32.7
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 3.0e-79 300.8 821 32.5
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.6e-78 297.7 792 33.5
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 2.6e-78 297.7 754 34.0
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 2.2e-77 294.7 796 32.0
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 7.0e-76 289.7 798 32.5
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-75 288.9 798 33.5
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 2.0e-75 288.1 805 31.3
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.7e-75 287.7 788 33.0
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.3e-74 285.4 789 32.4
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.3e-74 285.4 822 31.9
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 2.2e-74 284.6 799 31.3
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 8.5e-74 282.7 727 34.1
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.1e-73 282.3 799 32.0
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 2.5e-73 281.2 829 31.5
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.2e-73 280.8 789 32.3
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 9.4e-73 279.3 789 32.6
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.2e-72 278.9 800 32.6
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.8e-71 275.0 853 33.6
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 9.8e-70 269.2 783 31.2
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 2.2e-69 268.1 790 30.6
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 2.8e-69 267.7 730 32.6
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 5.4e-68 263.5 804 32.2
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 9.1e-68 262.7 810 30.4
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.6e-67 261.9 835 32.9
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 7.7e-67 259.6 798 29.6
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.7e-66 258.5 819 31.1
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.7e-66 258.5 838 29.4
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 3.8e-66 257.3 793 30.0
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 5.0e-66 256.9 363 43.5
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 5.0e-66 256.9 834 31.7
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 8.6e-66 256.1 784 29.1
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-65 255.8 311 48.6
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.2e-65 254.2 815 32.3
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.2e-65 253.1 319 48.3
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.6e-64 251.9 775 29.3
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.1e-64 251.5 319 45.8
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 4.7e-64 250.4 780 30.9
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 4.7e-64 250.4 809 30.7
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.0e-63 249.2 755 29.8
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.0e-63 249.2 360 41.7
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.0e-63 249.2 755 31.7
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 8.8e-63 246.1 672 33.2
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 2.0e-62 245.0 766 28.9
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 2.0e-62 245.0 781 29.2
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 3.4e-62 244.2 316 47.2
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.4e-62 244.2 327 44.3
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 5.7e-62 243.4 781 28.8
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.7e-61 241.9 787 29.5
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 3.7e-61 240.7 776 30.7
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.8e-60 238.4 775 28.3
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.4e-60 238.0 807 30.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.6e-59 235.3 768 29.0
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.0e-59 235.0 767 30.1
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 7.8e-59 233.0 305 44.6
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.3e-58 232.3 754 29.6
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 2.9e-58 231.1 484 36.4
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 3.8e-58 230.7 770 28.8
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 8.6e-58 229.6 776 28.5
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 1.1e-57 229.2 762 30.8
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 2.1e-56 224.9 318 43.4
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 2.8e-56 224.6 700 28.9
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 4.7e-56 223.8 771 27.9
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 4.7e-56 223.8 274 49.3
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.1e-56 223.4 307 43.6
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.8e-55 221.9 312 45.2
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.0e-55 221.1 345 42.0
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 4.4e-54 217.2 759 27.0
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 4.9e-53 213.8 795 28.8
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.3e-53 213.0 296 43.2
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 1.4e-52 212.2 367 39.0
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 9.2e-52 209.5 363 40.5
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.0e-51 208.4 274 46.4
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.3e-50 204.9 304 43.8
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 3.0e-50 204.5 866 27.4
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 5.0e-50 203.8 339 37.8
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 4.3e-49 200.7 887 28.7
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.1e-47 196.1 323 41.5
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.3e-47 194.9 307 39.7
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.9e-47 193.0 268 43.3
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 7.5e-46 189.9 925 24.6
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.7e-45 188.7 792 29.9
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 2.2e-45 188.3 341 39.0
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.2e-45 188.3 268 43.3
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.4e-44 184.9 310 39.7
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.4e-44 183.7 966 25.8
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 5.4e-44 183.7 272 42.3
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 8.6e-42 176.4 769 26.7
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 1.5e-41 175.6 214 50.0
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 9.5e-41 172.9 285 38.9
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 9.5e-41 172.9 419 34.8
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.6e-40 171.0 223 43.9
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 6.0e-35 153.7 255 40.8
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.2e-32 146.0 817 26.1
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.7e-27 128.3 531 29.0
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.3e-26 125.9 185 41.6
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 3.9e-26 124.4 791 25.4
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-25 122.1 188 44.7
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-25 122.1 188 44.7
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 2.5e-25 121.7 385 31.7
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.9e-21 108.2 352 30.1
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 2.9e-21 108.2 216 32.9
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 9.3e-20 103.2 393 29.5
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 9.3e-20 103.2 125 49.6
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 2.1e-19 102.1 126 43.7
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 1.7e-18 99.0 178 34.3
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.3e-18 98.6 600 29.2
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 3.9e-18 97.8 151 38.4
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.1e-17 96.3 178 34.8
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 3.3e-17 94.7 168 38.7
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 5.6e-17 94.0 178 33.7
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 7.3e-17 93.6 129 45.7
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 1.6e-16 92.4 179 34.6
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 2.8e-16 91.7 181 35.4
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.8e-16 90.9 83 54.2
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 4.8e-16 90.9 114 42.1
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 6.2e-16 90.5 149 36.9
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 6.2e-16 90.5 199 31.7
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.1e-15 88.2 143 39.9
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 4.5e-14 84.3 179 34.1
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 2.4e-12 78.6 126 37.3
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 1.9e-09 68.9 289 25.6
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.9e-09 68.9 174 32.8
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 2.1e-08 65.5 132 31.8
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 4.0e-07 61.2 79 50.6
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 2.6e-06 58.5 124 33.9


User provided reference genes

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