Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 0.0e+00 1265.4 618 100.0
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 4.8e-258 894.4 565 76.1
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 7.9e-192 674.5 614 54.6
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.4e-185 653.7 576 55.9
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 1.2e-184 650.6 580 55.5
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 8.2e-181 637.9 628 52.7
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.7e-178 630.2 601 52.2
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 3.2e-177 625.9 597 53.8
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 7.2e-177 624.8 609 51.6
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 3.0e-175 619.4 610 51.0
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 5.7e-174 615.1 613 51.9
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 3.7e-173 612.5 613 51.7
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 5.3e-172 608.6 599 51.9
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 3.4e-171 605.9 609 50.9
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 7.7e-171 604.7 582 52.4
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 3.8e-170 602.4 613 50.6
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 5.5e-169 598.6 590 50.0
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 7.9e-168 594.7 595 50.8
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.0e-167 592.8 616 50.0
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.0e-167 592.8 616 50.0
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 3.9e-167 592.4 616 49.8
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 6.7e-167 591.7 540 54.4
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 8.8e-167 591.3 589 50.9
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.5e-166 590.5 616 49.4
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.7e-165 587.0 575 51.1
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 3.7e-165 585.9 577 50.8
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 8.2e-165 584.7 576 50.5
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 4.1e-164 582.4 598 50.2
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 1.2e-163 580.9 600 49.8
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.3e-162 577.4 595 49.6
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 3.8e-162 575.9 605 49.8
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 3.2e-161 572.8 596 49.2
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 4.2e-161 572.4 598 48.0
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 4.2e-161 572.4 582 48.6
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 7.2e-161 571.6 590 48.3
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 1.2e-160 570.9 612 48.5
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 3.6e-160 569.3 589 48.0
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 6.1e-160 568.5 597 48.1
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 1.4e-159 567.4 594 48.3
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 3.0e-159 566.2 629 47.5
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 3.9e-159 565.8 603 46.8
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 3.3e-158 562.8 616 46.1
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 4.4e-158 562.4 592 46.6
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 1.3e-157 560.8 600 47.5
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 2.8e-157 559.7 589 48.4
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 4.8e-157 558.9 614 47.1
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 6.3e-157 558.5 602 48.2
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 3.1e-156 556.2 613 46.8
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 9.1e-156 554.7 601 46.1
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.0e-155 553.5 580 47.4
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 4.5e-155 552.4 609 47.5
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 1.7e-154 550.4 548 51.1
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 5.0e-154 548.9 604 46.9
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 6.5e-154 548.5 583 47.9
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 6.5e-154 548.5 578 47.4
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 6.5e-154 548.5 578 47.4
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 6.5e-154 548.5 610 47.7
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 8.5e-154 548.1 622 46.6
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 1.5e-153 547.4 612 46.2
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 4.2e-153 545.8 607 47.1
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 7.2e-153 545.0 607 46.1
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 3.6e-152 542.7 615 45.4
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 8.8e-151 538.1 566 47.3
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 1.2e-150 537.7 577 49.0
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 2.8e-149 533.1 611 47.3
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.4e-148 530.8 575 48.9
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 1.2e-147 527.7 608 46.5
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 2.7e-147 526.6 580 46.0
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 3.5e-147 526.2 575 47.0
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 1.6e-144 517.3 575 46.4
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 2.7e-144 516.5 585 47.0
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 4.0e-143 512.7 622 46.1
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 5.2e-143 512.3 594 46.6
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 3.4e-142 509.6 595 45.5
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 3.7e-141 506.1 591 46.0
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.4e-140 504.2 621 45.9
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 7.0e-140 501.9 595 45.4
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 2.7e-139 500.0 584 44.5
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 5.9e-139 498.8 597 45.4
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 5.9e-139 498.8 597 45.4
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 5.9e-139 498.8 597 45.4
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.8e-136 490.0 539 48.1
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 2.0e-134 483.8 539 47.3
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 3.5e-131 473.0 578 42.6
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.0e-130 471.5 576 42.4
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 6.6e-130 468.8 397 56.4
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 5.6e-129 465.7 608 42.3
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 3.1e-127 459.9 542 45.8
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 5.0e-122 442.6 594 42.1
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 8.6e-122 441.8 452 49.6
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 1.2e-120 438.0 494 46.4
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 3.2e-116 423.3 638 39.2
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 3.1e-111 406.8 397 50.1
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.0e-106 391.7 398 49.2
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 9.9e-94 348.6 340 50.9
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.9e-90 336.7 352 50.9
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 9.6e-73 278.9 322 42.9
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.6e-64 251.5 248 48.8
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-59 235.0 223 49.3
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 2.0e-54 218.0 226 49.1
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.6e-51 208.4 217 45.2
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 6.7e-50 203.0 498 29.3
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 7.0e-47 193.0 177 55.4
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.9e-45 187.6 178 51.1
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.6e-43 181.8 153 53.6
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.7e-43 180.3 178 48.9
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.0e-42 177.6 178 49.4
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 3.9e-42 177.2 196 46.4
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.0e-38 164.9 491 26.7
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.0e-37 162.5 134 59.7
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 8.5e-37 159.5 181 48.1
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.9e-36 158.3 133 58.6
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 1.8e-34 151.8 206 37.9
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.6e-30 138.7 470 24.9
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 4.0e-26 124.0 127 48.8
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 5.2e-26 123.6 116 52.6
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 3.1e-23 114.4 126 46.8
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.2e-22 112.5 362 27.9
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 2.1e-11 75.1 85 40.0
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 8.0e-11 73.2 85 38.8
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 4.4e-09 67.4 69 52.2
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 6.4e-08 63.5 59 50.8
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 8.3e-08 63.2 59 50.8
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 5.4e-07 60.5 57 50.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.0e-06 58.5 54 46.3


User provided reference genes

Program Settings