Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 9.9e-78 293.5 162 100.0
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-29 133.3 156 55.8
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 6.7e-26 121.3 154 53.9
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 3.1e-23 112.5 161 50.9
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 8.5e-21 104.4 138 50.0
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 8.5e-21 104.4 160 45.0
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-18 97.1 138 46.4
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 5.2e-18 95.1 139 43.9
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 2.6e-17 92.8 136 47.8
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 7.5e-17 91.3 140 43.6
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-16 89.7 124 50.8
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-16 89.0 162 42.0
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 8.3e-16 87.8 162 41.4
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.1e-15 87.4 151 40.4
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.4e-15 87.0 158 41.1
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.4e-15 85.1 161 42.9
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.2e-14 84.0 158 43.7
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 1.6e-14 83.6 161 38.5
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.7e-14 82.8 141 41.8
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.7e-14 82.8 141 41.8
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 3.5e-14 82.4 161 37.9
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.5e-14 82.4 161 37.9
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.5e-14 82.0 158 39.9
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.9e-14 81.6 105 46.7
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.7e-14 81.3 161 37.9
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.0e-13 80.9 155 37.4
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.0e-13 80.9 158 39.9
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.7e-13 80.1 164 39.6
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.2e-13 79.7 158 40.5
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.2e-13 79.7 144 41.7
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.9e-13 79.3 125 43.2
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.9e-13 79.3 125 44.0
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 5.0e-13 78.6 139 41.7
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.5e-13 78.2 158 38.0
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 8.5e-13 77.8 133 39.1
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 8.5e-13 77.8 161 39.8
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 8.5e-13 77.8 163 40.5
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.1e-12 77.4 156 39.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.1e-12 77.4 131 42.7
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-12 77.4 130 43.1
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.1e-12 77.4 162 37.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.1e-12 77.4 156 39.1
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.5e-12 77.0 161 37.3
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.5e-12 77.0 160 38.8
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.9e-12 76.6 158 39.2
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.9e-12 76.6 165 40.0
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 2.5e-12 76.3 149 41.6
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.5e-12 76.3 149 41.6
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.5e-12 76.3 130 42.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.5e-12 76.3 139 40.3
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.2e-12 75.9 150 38.0
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.2e-12 75.9 158 37.3
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.2e-12 75.9 151 44.4
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 4.2e-12 75.5 115 40.0
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 4.2e-12 75.5 161 39.1
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 4.2e-12 75.5 151 40.4
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 4.2e-12 75.5 150 37.3
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 4.2e-12 75.5 150 43.3
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 5.5e-12 75.1 161 39.8
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 5.5e-12 75.1 151 40.4
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 7.2e-12 74.7 105 44.8
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.2e-12 74.7 144 43.1
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 7.2e-12 74.7 153 38.6
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 7.2e-12 74.7 151 43.0
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 9.5e-12 74.3 103 43.7
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 9.5e-12 74.3 153 38.6
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 9.5e-12 74.3 141 39.0
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-11 73.9 153 37.9
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-11 73.9 153 37.9
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.6e-11 73.6 156 37.2
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 2.1e-11 73.2 108 43.5
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 2.1e-11 73.2 149 36.9
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.7e-11 72.8 124 41.1
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.7e-11 72.8 158 37.3
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 2.7e-11 72.8 164 40.2
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 2.7e-11 72.8 163 39.3
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-11 72.4 151 37.1
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-11 72.4 153 37.9
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 4.7e-11 72.0 139 38.8
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 8.0e-11 71.2 103 42.7
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 8.0e-11 71.2 136 37.5
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 8.0e-11 71.2 158 37.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.0e-10 70.9 161 35.4
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.0e-10 70.9 144 36.8
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.4e-10 70.5 161 37.3
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.4e-10 70.5 128 38.3
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-10 70.5 153 37.3
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-10 70.5 133 43.6
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-10 70.5 153 37.3
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.8e-10 70.1 161 38.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.8e-10 70.1 166 38.0
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.3e-10 69.7 157 35.7
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.3e-10 69.7 165 34.5
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 2.3e-10 69.7 152 36.2
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-10 69.7 153 37.3
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.0e-10 69.3 146 42.5
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 3.0e-10 69.3 136 37.5
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 3.0e-10 69.3 145 39.3
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 4.0e-10 68.9 139 35.3
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 5.2e-10 68.6 155 35.5
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 5.2e-10 68.6 136 42.6
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 6.8e-10 68.2 149 39.6
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.8e-10 68.2 123 40.7
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 6.8e-10 68.2 112 42.9
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 6.8e-10 68.2 159 36.5
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.5e-09 67.0 159 36.5
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 1.5e-09 67.0 126 38.9
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 2.0e-09 66.6 168 34.5
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.0e-09 66.6 142 38.7
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 2.0e-09 66.6 104 41.3
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.6e-09 66.2 136 37.5
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.4e-09 65.9 139 35.3
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 4.4e-09 65.5 160 35.6
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 5.7e-09 65.1 142 36.6
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.8e-09 64.3 124 41.1
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.3e-08 63.9 152 34.9
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-08 63.9 158 35.4
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 1.7e-08 63.5 149 38.9
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 1.7e-08 63.5 134 35.8
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.2e-08 63.2 158 32.9
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.8e-08 62.8 119 37.0
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 2.8e-08 62.8 157 36.3
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 4.9e-08 62.0 155 35.5
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 6.3e-08 61.6 143 37.1
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 6.3e-08 61.6 124 38.7
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 8.3e-08 61.2 109 43.1
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 8.3e-08 61.2 109 43.1
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 8.3e-08 61.2 151 37.1
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 8.3e-08 61.2 126 34.9
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 1.1e-07 60.8 110 42.7
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-07 60.8 127 40.9
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.4e-07 60.5 150 33.3
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.4e-07 60.5 155 34.2
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.4e-07 60.5 116 36.2
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-07 60.5 86 44.2
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.4e-07 60.5 158 34.2
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.8e-07 60.1 157 33.8
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.8e-07 60.1 157 33.8
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.8e-07 60.1 141 34.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 3.1e-07 59.3 161 34.2
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 4.1e-07 58.9 110 41.8
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.1e-07 58.9 138 37.0
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 9.2e-07 57.8 141 35.5
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 9.2e-07 57.8 110 41.8
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 9.2e-07 57.8 141 36.9
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-06 57.4 167 35.9
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-06 57.4 155 35.5
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 1.2e-06 57.4 138 37.0
ECA234G0512 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.6e-06 57.0 154 37.7
ECA234G0883 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.6e-06 57.0 154 37.7
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 1.6e-06 57.0 150 34.7
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.5e-06 55.5 145 36.6
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 5.9e-06 55.1 116 34.5
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.7e-06 54.7 140 33.6


User provided reference genes

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