Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-117 426.8 230 100.0
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 4.3e-42 175.6 130 76.2
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 6.4e-30 135.2 145 55.9
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 8.7e-27 124.8 139 55.4
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 4.8e-25 119.0 140 50.7
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 3.4e-23 112.8 141 45.4
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.3e-22 110.9 142 46.5
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 6.4e-22 108.6 138 50.0
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 6.4e-22 108.6 151 50.3
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.3e-19 100.1 138 44.2
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-18 97.8 145 47.6
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.5e-18 97.4 162 39.5
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.5e-18 97.4 139 40.3
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.5e-18 96.7 142 40.8
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.3e-18 96.3 141 43.3
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 4.3e-18 95.9 129 41.1
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.3e-18 95.9 137 47.4
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 7.3e-18 95.1 149 42.3
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 9.6e-18 94.7 144 41.0
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.6e-17 94.0 147 42.2
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.1e-17 93.6 132 42.4
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.6e-17 92.8 141 41.1
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 4.8e-17 92.4 144 41.7
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.8e-17 92.4 132 46.2
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.8e-17 92.4 132 46.2
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 4.8e-17 92.4 136 44.1
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.2e-17 92.0 145 42.1
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 6.2e-17 92.0 145 41.4
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.1e-16 91.3 108 44.4
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.1e-16 91.3 135 43.7
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.1e-16 91.3 143 42.0
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.1e-16 91.3 141 41.1
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.8e-16 90.5 158 41.1
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 1.8e-16 90.5 144 38.9
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-16 90.5 145 49.0
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.8e-16 90.5 142 44.4
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.4e-16 90.1 145 40.7
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.4e-16 90.1 144 37.5
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.1e-16 89.7 106 46.2
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.1e-16 89.7 106 46.2
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.1e-16 89.7 147 38.8
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 5.3e-16 89.0 135 37.0
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 5.3e-16 89.0 138 44.2
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 5.3e-16 89.0 132 41.7
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.9e-16 88.6 138 37.0
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 6.9e-16 88.6 133 45.9
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.2e-15 87.8 105 44.8
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.5e-15 87.4 140 36.4
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 2.0e-15 87.0 102 44.1
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-15 87.0 159 36.5
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-15 87.0 159 36.5
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 2.0e-15 87.0 145 44.1
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 2.6e-15 86.7 141 39.0
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 2.6e-15 86.7 141 39.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 4.5e-15 85.9 147 36.7
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 5.8e-15 85.5 134 43.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 5.8e-15 85.5 144 37.5
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 5.8e-15 85.5 144 38.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 5.8e-15 85.5 134 39.6
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.6e-15 85.1 131 43.5
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 9.9e-15 84.7 152 36.2
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 9.9e-15 84.7 133 45.9
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 9.9e-15 84.7 143 38.5
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-14 84.3 121 50.4
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.7e-14 84.0 130 40.8
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 2.2e-14 83.6 144 38.9
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.2e-14 83.6 144 38.9
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.9e-14 83.2 144 38.9
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.9e-14 83.2 124 43.5
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 3.8e-14 82.8 156 36.5
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 3.8e-14 82.8 145 37.2
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.9e-14 82.4 106 42.5
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.9e-14 82.4 161 36.6
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 6.4e-14 82.0 134 41.8
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 6.4e-14 82.0 134 41.8
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.4e-14 82.0 133 42.9
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.4e-14 81.6 135 42.2
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.1e-13 81.3 158 34.2
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-13 80.9 141 42.6
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.2e-13 79.7 135 42.2
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 4.2e-13 79.3 109 41.3
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 4.2e-13 79.3 135 34.1
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 4.2e-13 79.3 96 46.9
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 4.2e-13 79.3 133 38.3
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 4.2e-13 79.3 127 42.5
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 5.4e-13 79.0 140 35.0
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 5.4e-13 79.0 133 37.6
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.1e-13 78.6 137 40.9
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 7.1e-13 78.6 129 41.1
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 9.3e-13 78.2 194 34.0
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 9.3e-13 78.2 96 46.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.2e-12 77.8 145 41.4
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 1.6e-12 77.4 124 41.9
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.1e-12 77.0 141 37.6
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.1e-12 77.0 135 36.3
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.7e-12 76.6 133 37.6
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 3.5e-12 76.3 130 41.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 6.0e-12 75.5 147 37.4
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.0e-12 75.5 120 42.5
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 7.9e-12 75.1 134 40.3
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.0e-11 74.7 137 39.4
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.0e-11 74.7 97 46.4
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-11 74.7 145 36.6
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.3e-11 74.3 137 39.4
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.3e-11 74.3 153 36.6
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-11 74.3 127 40.2
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.8e-11 73.9 157 31.8
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.8e-11 73.9 130 43.8
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-11 73.9 120 42.5
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-11 73.9 127 40.2
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 2.3e-11 73.6 130 39.2
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-11 73.6 127 40.9
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 3.0e-11 73.2 104 42.3
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.0e-11 73.2 153 31.4
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-11 73.2 127 40.2
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-11 73.2 127 40.2
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 3.9e-11 72.8 99 44.4
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 3.9e-11 72.8 120 41.7
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 5.1e-11 72.4 135 34.1
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.1e-11 72.4 139 36.0
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 5.1e-11 72.4 103 43.7
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 8.7e-11 71.6 136 36.8
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 8.7e-11 71.6 149 34.2
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.1e-10 71.2 114 37.7
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-10 70.9 146 34.2
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.9e-10 70.5 142 35.2
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.9e-10 70.5 109 39.4
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-10 70.5 120 40.0
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-10 70.5 127 39.4
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-10 70.5 127 39.4
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 3.3e-10 69.7 97 42.3
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 4.3e-10 69.3 104 40.4
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 5.6e-10 68.9 154 39.0
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 5.6e-10 68.9 132 39.4
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 5.6e-10 68.9 114 36.8
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 7.4e-10 68.6 147 35.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-10 68.6 87 46.0
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-10 68.6 127 38.6
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 9.6e-10 68.2 164 32.9
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 9.6e-10 68.2 127 38.6
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.3e-09 67.8 133 36.1
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.1e-09 67.0 126 37.3
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 3.7e-09 66.2 127 38.6
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 3.7e-09 66.2 135 37.0
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 6.2e-09 65.5 138 36.2
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-08 64.7 104 38.5
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 1.1e-08 64.7 108 43.5
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.4e-08 64.3 140 40.7
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.4e-08 64.3 126 37.3
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 2.4e-08 63.5 114 35.1
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 3.1e-08 63.2 142 34.5
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 4.0e-08 62.8 131 37.4
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 6.9e-08 62.0 129 35.7
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.0e-08 61.6 107 34.6
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.0e-08 61.6 151 34.4
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.5e-07 60.8 128 34.4
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 2.0e-07 60.5 104 32.7
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 2.0e-07 60.5 104 32.7
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 2.0e-07 60.5 104 32.7
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 2.0e-07 60.5 104 32.7
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 3.4e-07 59.7 99 37.4
Solyc09g072770.1 Solanum lycopersicum HOM05D013183 ORTHO05D018130 4.5e-07 59.3 125 28.8
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.8e-07 58.9 125 36.8
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 5.8e-07 58.9 90 41.1
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 7.6e-07 58.5 74 41.9
PGSC0003DMG400026885 Solanum tuberosum HOM05D013183 ORTHO05D018130 1.3e-06 57.8 123 31.7
Sopen09g028540 Solanum pennellii HOM05D013183 ORTHO05D018130 1.7e-06 57.4 126 28.6
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 2.2e-06 57.0 141 34.0
Sp1g22940 Schrenkiella parvula HOM05D008071 ORTHO05D009954 2.9e-06 56.6 117 37.6
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 6.4e-06 55.5 111 37.8


User provided reference genes

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