Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 2.1e-172 609.0 319 100.0
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.4e-139 500.0 320 82.8
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 3.5e-119 432.2 318 72.0
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 2.3e-102 376.3 320 60.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 9.0e-99 364.4 322 59.9
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.7e-97 360.1 323 58.2
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.0e-94 350.9 322 58.7
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.0e-94 350.9 320 59.1
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-94 350.5 331 57.7
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 8.7e-94 347.8 318 57.9
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.3e-92 344.0 325 56.9
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.7e-92 342.4 316 57.3
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.1e-91 340.9 323 54.2
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 3.1e-91 339.3 319 58.3
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 3.1e-91 339.3 300 58.7
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 3.1e-91 339.3 318 56.3
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 9.0e-91 337.8 323 56.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.6e-90 336.3 327 56.9
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.4e-90 335.9 312 56.4
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 7.6e-90 334.7 324 56.5
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 7.6e-90 334.7 320 55.3
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.7e-89 333.6 321 56.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.9e-89 332.8 322 56.2
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 2.9e-89 332.8 281 62.3
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.9e-89 332.8 322 55.3
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 2.9e-89 332.8 320 55.3
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.4e-88 330.5 302 57.0
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.9e-88 330.1 318 56.3
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.2e-88 328.9 322 55.6
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.3e-88 327.8 331 55.3
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 9.3e-88 327.8 302 56.3
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 9.3e-88 327.8 322 56.2
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.1e-87 326.6 317 54.9
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.1e-87 326.6 315 56.2
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.0e-86 324.3 315 56.2
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.0e-86 324.3 323 53.9
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.3e-86 323.9 273 61.5
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.3e-86 323.9 305 57.0
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 6.7e-86 321.6 318 56.9
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 6.7e-86 321.6 323 55.4
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 8.7e-86 321.2 302 55.3
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 2.5e-85 319.7 315 55.6
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 7.4e-85 318.2 318 55.3
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.6e-84 317.0 324 54.0
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.2e-84 316.6 309 56.3
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.1e-83 314.3 322 54.3
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 5.3e-83 312.0 314 53.2
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 6.9e-83 311.6 315 53.7
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 2.6e-82 309.7 301 56.1
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 5.9e-82 308.5 318 52.5
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 5.9e-82 308.5 323 52.0
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.7e-81 307.0 323 53.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 8.5e-81 304.7 324 52.2
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.4e-80 303.9 324 50.0
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 4.2e-80 302.4 310 52.6
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 9.4e-80 301.2 324 52.2
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.2e-79 300.8 314 52.5
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 2.7e-79 299.7 419 42.2
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 6.1e-79 298.5 322 50.9
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.3e-78 296.6 324 49.7
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 2.3e-78 296.6 323 51.4
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.9e-78 295.8 345 50.7
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 8.8e-78 294.7 319 50.8
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 3.3e-77 292.7 317 51.1
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 5.7e-77 292.0 257 58.4
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 7.4e-77 291.6 291 54.3
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.7e-76 290.4 345 51.9
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 4.8e-76 288.9 323 51.1
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.8e-76 288.9 257 58.0
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.1e-75 287.7 294 54.8
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.4e-75 287.3 294 54.8
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 2.4e-75 286.6 324 49.7
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 4.1e-75 285.8 324 50.0
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 4.1e-75 285.8 324 49.7
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.2e-74 284.3 321 48.9
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.2e-74 284.3 324 50.6
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.4e-74 282.7 316 50.6
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 7.7e-74 281.6 324 50.3
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.0e-73 281.2 322 47.8
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.3e-73 280.8 319 50.5
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.2e-73 280.0 324 49.7
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 2.2e-73 280.0 325 48.3
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 2.2e-73 280.0 325 48.3
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 2.2e-73 280.0 325 48.3
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 2.2e-73 280.0 317 47.6
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 5.0e-73 278.9 321 48.0
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 6.5e-73 278.5 327 50.2
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 8.5e-73 278.1 322 48.1
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 8.5e-73 278.1 323 48.9
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.9e-72 276.9 318 48.4
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.9e-72 276.9 318 48.4
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.9e-72 276.9 291 52.2
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 7.2e-72 275.0 319 48.6
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 9.4e-72 274.6 318 48.1
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 9.4e-72 274.6 321 48.0
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 1.2e-71 274.2 284 52.1
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.2e-71 274.2 325 47.1
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.1e-71 273.5 318 48.4
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 2.1e-71 273.5 318 48.4
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.1e-71 273.5 322 48.4
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.6e-71 272.7 318 48.7
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 4.7e-71 272.3 319 48.0
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 6.1e-71 271.9 319 48.3
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 6.1e-71 271.9 319 48.3
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 6.1e-71 271.9 319 48.3
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.1e-71 271.9 319 47.3
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 6.1e-71 271.9 260 55.8
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.0e-70 271.2 318 48.1
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.0e-70 271.2 318 48.1
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.4e-70 270.8 318 47.8
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.8e-70 270.4 321 46.7
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.8e-70 270.4 321 47.4
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.0e-70 269.6 321 47.4
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 5.1e-70 268.9 318 46.2
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.8e-70 268.1 324 46.9
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 9.7e-69 264.6 317 47.6
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.7e-68 263.8 323 47.4
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 2.2e-68 263.5 320 46.2
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 8.2e-68 261.5 322 46.3
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.4e-67 260.8 325 45.5
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.4e-67 260.0 325 45.5
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.4e-67 260.0 327 43.7
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 3.1e-67 259.6 287 52.6
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 3.1e-67 259.6 323 47.1
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 4.1e-67 259.2 316 44.9
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 4.1e-67 259.2 321 44.2
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 7.0e-67 258.5 314 47.1
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.2e-66 257.7 400 43.2
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.7e-66 255.0 316 44.0
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 6.5e-65 251.9 317 45.1
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.9e-64 250.4 320 46.6
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.2e-63 247.7 317 44.5
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.7e-63 246.5 260 53.5
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 2.0e-58 230.3 335 46.3
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.8e-57 226.1 315 45.1
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.1e-48 198.0 225 46.7
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.8e-41 172.9 215 47.0
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 4.7e-39 166.0 245 36.3
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 8.9e-38 161.8 326 35.3
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 9.8e-37 158.3 166 51.8
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 3.2e-35 153.3 176 47.7
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 7.3e-32 142.1 192 45.3
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 9.5e-32 141.7 316 29.4
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 2.8e-31 140.2 171 48.0
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.2e-29 134.8 326 28.5
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.6e-26 124.4 295 31.9
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.3e-22 110.5 136 42.6
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 6.8e-22 109.0 136 41.9
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 3.2e-19 100.1 139 42.4
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.4e-19 99.4 114 46.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-17 94.7 93 55.9
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-17 94.7 93 55.9
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 8.6e-17 92.0 87 52.9
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.5e-16 90.5 102 52.0
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 3.4e-13 80.1 79 50.6
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.4e-13 79.7 107 43.0
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 5.8e-13 79.3 74 52.7
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 5.8e-13 79.3 74 52.7
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 3.2e-11 73.6 74 48.6
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.5e-08 64.7 83 41.0
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 3.1e-06 57.0 105 32.4


User provided reference genes

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