Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 4.1e-143 511.5 289 100.0
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 1.5e-97 360.1 290 71.0
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 1.3e-72 277.3 257 67.7
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 6.8e-53 211.8 310 47.7
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 9.8e-52 208.0 255 54.5
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 2.4e-50 203.4 292 52.1
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 5.9e-49 198.7 343 42.3
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 8.6e-48 194.9 300 48.3
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 1.1e-47 194.5 284 48.6
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 3.3e-47 193.0 300 45.3
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.2e-46 191.0 281 52.0
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 2.8e-46 189.9 304 47.0
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 4.7e-46 189.1 266 50.4
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 1.0e-45 188.0 286 51.0
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 5.2e-45 185.7 311 42.4
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 1.5e-44 184.1 304 46.4
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 1.5e-44 184.1 323 42.4
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 3.4e-44 183.0 257 49.4
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 4.4e-44 182.6 254 46.1
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 5.7e-44 182.2 287 48.8
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 1.7e-43 180.6 172 61.0
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 2.8e-43 179.9 258 48.8
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 2.8e-43 179.9 289 48.8
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 6.3e-43 178.7 248 54.8
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 8.3e-43 178.3 286 49.7
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 2.4e-42 176.8 282 50.4
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 9.2e-42 174.9 175 57.1
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 1.2e-41 174.5 293 46.1
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 1.6e-41 174.1 290 47.6
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 2.0e-41 173.7 294 48.6
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 3.5e-41 172.9 301 41.9
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 4.5e-41 172.6 309 47.2
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 4.5e-41 172.6 299 43.1
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 1.3e-40 171.0 305 40.7
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 1.3e-40 171.0 286 44.8
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 1.3e-40 171.0 302 44.4
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 2.3e-40 170.2 267 49.4
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 3.9e-40 169.5 169 56.8
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 5.0e-40 169.1 294 45.9
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 6.6e-40 168.7 273 49.8
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 8.6e-40 168.3 300 42.7
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 2.5e-39 166.8 275 47.6
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 2.5e-39 166.8 281 47.0
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 3.3e-39 166.4 295 47.5
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 5.6e-39 165.6 290 49.3
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 7.3e-39 165.2 301 42.5
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 3.6e-38 162.9 291 44.0
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 4.7e-38 162.5 301 45.8
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 6.1e-38 162.2 298 47.7
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 8.0e-38 161.8 284 48.6
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 8.0e-38 161.8 286 44.8
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 1.0e-37 161.4 293 44.7
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 1.8e-37 160.6 296 43.2
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 3.1e-37 159.8 291 47.4
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 1.5e-36 157.5 197 49.2
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 1.5e-36 157.5 286 41.6
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 2.0e-36 157.1 265 46.4
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 2.0e-36 157.1 290 47.9
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 3.7e-35 152.9 265 45.7
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 6.4e-35 152.1 266 44.4
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 8.3e-35 151.8 312 37.5
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 2.4e-34 150.2 265 46.4
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 3.2e-34 149.8 298 46.6
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 3.2e-34 149.8 292 47.3
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 1.2e-33 147.9 258 41.9
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 1.6e-33 147.5 301 42.9
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 2.7e-33 146.7 261 47.1
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 3.9e-32 142.9 248 39.1
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 5.0e-32 142.5 162 51.9
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 6.6e-32 142.1 280 40.0
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 1.9e-31 140.6 278 37.1
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 1.2e-30 137.9 307 39.7
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 1.2e-30 137.9 252 46.0
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 3.6e-30 136.3 303 34.7
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 4.7e-30 136.0 286 42.3
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 6.2e-30 135.6 303 37.6
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 8.0e-30 135.2 285 37.5
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 8.0e-30 135.2 356 39.0
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 1.4e-29 134.4 278 39.9
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.4e-29 134.4 293 44.7
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 1.4e-29 134.4 269 44.2
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 4.0e-29 132.9 254 42.5
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 1.2e-28 131.3 293 41.0
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 1.5e-28 131.0 256 43.8
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 5.8e-28 129.0 303 38.3
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 5.8e-28 129.0 391 35.8
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 9.8e-28 128.3 253 44.7
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 2.9e-27 126.7 169 46.7
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 4.9e-27 125.9 157 46.5
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 1.1e-26 124.8 251 39.0
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 1.4e-26 124.4 278 34.9
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 4.1e-26 122.9 152 45.4
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 1.2e-25 121.3 77 71.4
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 1.0e-24 118.2 271 40.2
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 6.2e-22 109.0 271 40.2
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 6.2e-22 109.0 271 40.2
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 5.2e-21 105.9 270 38.1
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 8.9e-21 105.1 270 40.0
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 2.6e-20 103.6 270 40.0
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 2.7e-17 93.6 200 48.0
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 2.3e-16 90.5 300 29.3
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 1.9e-15 87.4 58 63.8
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 1.3e-11 74.7 216 26.4
SEGI_04858 Sequoiadendron giganteum HOM05D007090 ORTHO05D008993 4.2e-10 69.7 57 54.4
SMO137G0209 Selaginella moellendorffii HOM05D007090 ORTHO05D008993 2.7e-09 67.0 138 36.2
Lj7P535T24 Lonicera japonica HOM05D007090 ORTHO05D008993 3.0e-08 63.5 84 44.0
Mapoly0035s0135 Marchantia polymorpha HOM05D007090 ORTHO05D008993 1.3e-06 58.2 139 30.9


User provided reference genes

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