Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 4.3e-170 601.3 314 100.0
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.6e-114 416.0 273 79.9
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 3.1e-104 382.5 268 76.9
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.4e-96 357.1 276 69.9
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.8e-96 356.7 274 69.7
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 5.4e-96 355.1 268 71.6
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 9.2e-96 354.4 268 69.4
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 9.2e-96 354.4 273 68.1
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 3.5e-95 352.4 273 68.5
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.7e-94 350.1 274 69.7
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 5.0e-94 348.6 272 68.8
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 6.6e-94 348.2 278 68.7
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.5e-93 347.1 277 68.2
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.9e-93 346.7 275 68.4
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 2.5e-93 346.3 273 68.1
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 7.3e-93 344.7 275 67.6
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 9.5e-93 344.4 270 68.1
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 2.1e-92 343.2 274 68.2
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.8e-92 342.8 274 67.2
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 8.0e-92 341.3 274 66.8
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.8e-91 340.1 274 66.8
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.8e-91 340.1 264 69.7
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.3e-91 339.7 273 65.2
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 3.1e-91 339.3 276 65.9
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 6.8e-91 338.2 273 65.9
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 8.9e-91 337.8 275 65.8
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 4.4e-90 335.5 271 66.1
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 7.5e-90 334.7 274 66.1
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.9e-89 332.8 273 63.7
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 2.9e-89 332.8 269 65.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 3.7e-89 332.4 264 68.2
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 4.9e-89 332.0 271 64.9
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 8.3e-89 331.3 270 66.3
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.1e-88 330.9 271 65.3
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.4e-88 330.5 272 65.4
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.4e-88 330.5 281 62.6
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 2.4e-88 329.7 270 67.8
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 2.4e-88 329.7 271 63.8
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.4e-88 329.7 268 63.8
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 3.2e-88 329.3 271 64.9
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 4.1e-88 328.9 264 67.0
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.4e-88 328.6 273 64.8
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 7.0e-88 328.2 273 64.8
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 9.2e-88 327.8 273 63.4
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.2e-87 327.4 272 65.1
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 2.0e-87 326.6 273 65.2
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 2.0e-87 326.6 273 63.0
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.7e-87 326.2 275 61.5
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.7e-87 326.2 273 64.5
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 6.0e-87 325.1 274 64.6
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.0e-86 324.3 275 62.5
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 3.9e-86 322.4 271 62.7
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.6e-86 321.2 290 61.0
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.9e-85 320.1 273 61.9
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.3e-85 319.3 280 61.1
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.3e-85 319.3 280 62.5
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 4.3e-85 318.9 276 62.0
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 4.3e-85 318.9 273 60.4
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.3e-85 318.9 280 62.5
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 5.6e-85 318.5 277 61.0
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 7.3e-85 318.2 275 61.5
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 7.3e-85 318.2 271 62.0
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 9.5e-85 317.8 275 61.8
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.5e-85 317.8 286 60.1
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 1.6e-84 317.0 275 61.1
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 3.6e-84 315.8 277 61.0
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 3.6e-84 315.8 271 62.4
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 4.7e-84 315.5 270 63.7
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 6.2e-84 315.1 271 60.9
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.4e-83 313.9 304 58.9
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.4e-83 313.9 275 60.7
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.8e-83 313.5 270 62.6
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.0e-83 312.4 280 61.4
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.5e-82 310.5 276 60.1
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.0e-82 310.1 271 60.5
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 3.4e-82 309.3 270 61.1
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 7.5e-82 308.1 273 63.7
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 9.8e-82 307.8 263 63.5
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.1e-80 304.3 273 60.4
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 2.4e-80 303.1 264 61.7
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 6.0e-79 298.5 271 59.8
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.3e-78 297.4 248 64.9
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 6.6e-78 295.0 266 59.8
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.1e-77 294.3 249 63.9
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.5e-77 293.9 222 68.9
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 5.6e-77 292.0 340 49.7
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 4.4e-74 282.3 270 58.1
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.2e-71 274.2 275 56.4
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 3.5e-71 272.7 281 53.7
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 7.8e-71 271.6 247 57.5
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.8e-68 263.1 245 60.0
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.2e-66 257.7 269 52.8
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 8.4e-65 251.5 256 57.0
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 7.1e-64 248.4 288 49.0
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.3e-62 244.2 270 51.9
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 5.6e-61 238.8 246 54.9
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 5.8e-58 228.8 265 48.7
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.9e-57 226.5 192 62.5
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 6.0e-55 218.8 183 62.8
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 6.9e-51 205.3 263 41.4
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.0e-50 203.8 263 45.6
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 3.4e-50 203.0 194 54.1
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 8.4e-49 198.4 198 56.6
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 4.2e-48 196.1 142 67.6
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 1.6e-47 194.1 227 46.7
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 9.3e-40 168.3 349 35.2
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.9e-37 160.6 133 60.9
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.0e-34 150.6 115 68.7
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.0e-33 148.3 115 68.7
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 4.2e-32 142.9 108 64.8
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 1.1e-29 134.8 138 55.8
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 9.7e-29 131.7 149 51.0
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.8e-27 127.5 103 67.0
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 2.4e-27 127.1 94 64.9
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.4e-27 127.1 101 65.3
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 4.1e-27 126.3 84 73.8
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 9.0e-27 125.2 108 63.0
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 7.7e-26 122.1 281 32.4
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.4e-24 117.9 110 59.1
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.9e-24 117.5 101 62.4
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 4.6e-23 112.8 254 30.7
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 7.9e-23 112.1 107 62.6
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 7.9e-23 112.1 148 47.3
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.3e-20 104.8 74 70.3
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 2.2e-20 104.0 68 75.0
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 1.4e-19 101.3 74 71.6
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 5.9e-18 95.9 66 66.7
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.9e-17 93.6 60 71.7
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.9e-16 90.9 56 78.6
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 2.5e-16 90.5 129 41.9
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.2e-16 90.1 80 58.8
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.5e-13 81.3 103 47.6
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 7.7e-10 68.9 66 56.1
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 7.7e-10 68.9 97 41.2
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.7e-09 67.8 82 50.0
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 6.7e-06 55.8 37 64.9


User provided reference genes

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