Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 3.1e-229 798.1 407 100.0
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 3.6e-201 704.9 381 95.8
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 5.9e-71 272.3 310 55.2
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 8.0e-68 261.9 312 53.5
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 5.6e-61 239.2 223 61.4
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 8.3e-57 225.3 315 45.4
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 2.1e-55 220.7 317 44.2
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.3e-54 217.2 313 43.8
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.5e-53 213.8 321 41.1
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.1e-52 208.8 313 42.5
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 2.3e-51 207.2 314 43.3
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.2e-50 204.9 314 42.0
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 5.8e-50 202.6 312 43.3
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 1.3e-49 201.4 312 43.9
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.1e-47 194.1 376 38.6
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.7e-47 193.7 313 41.5
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 3.5e-47 193.4 300 41.7
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 1.0e-46 191.8 341 39.6
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.3e-46 191.4 311 41.5
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.3e-46 191.4 309 40.8
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 3.0e-46 190.3 327 40.1
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 3.0e-46 190.3 347 38.9
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 6.6e-46 189.1 317 41.0
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.5e-45 188.0 329 40.1
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.5e-45 188.0 319 42.9
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 5.6e-45 186.0 310 38.7
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 7.3e-45 185.7 367 39.5
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 7.3e-45 185.7 311 41.8
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 9.6e-45 185.3 307 39.4
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 9.6e-45 185.3 315 41.0
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 4.7e-44 183.0 316 38.3
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 8.1e-44 182.2 328 38.1
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.1e-44 182.2 319 39.5
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.4e-43 181.4 176 54.0
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 1.4e-43 181.4 324 38.3
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.4e-43 181.4 319 37.9
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.8e-43 181.0 285 41.1
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-43 181.0 282 40.1
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.4e-43 180.6 312 39.1
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 4.0e-43 179.9 328 40.2
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.2e-43 179.5 322 38.2
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.2e-42 178.3 335 39.4
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.0e-42 177.6 301 38.5
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 4.4e-42 176.4 332 38.6
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 4.4e-42 176.4 280 43.2
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 5.8e-42 176.0 391 38.1
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 5.8e-42 176.0 376 35.9
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 7.6e-42 175.6 307 40.4
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 9.9e-42 175.3 316 40.5
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.8e-41 173.3 362 37.0
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 4.9e-41 172.9 283 38.2
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 4.9e-41 172.9 159 56.0
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 6.4e-41 172.6 316 39.2
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 6.4e-41 172.6 312 37.5
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.4e-41 172.6 328 38.7
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 6.4e-41 172.6 159 57.2
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 8.4e-41 172.2 321 38.6
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.1e-40 171.8 316 39.2
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.1e-40 171.8 316 38.9
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.4e-40 171.4 313 38.7
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.9e-40 171.0 273 41.0
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 3.2e-40 170.2 321 39.3
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 7.1e-40 169.1 316 37.3
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.6e-39 167.9 308 38.6
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.6e-39 167.9 192 46.4
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.1e-39 167.5 321 37.7
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 3.5e-39 166.8 332 37.0
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 7.8e-39 165.6 274 39.8
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 2.3e-38 164.1 318 36.8
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 3.0e-38 163.7 309 36.6
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 3.0e-38 163.7 341 35.8
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.9e-38 163.3 158 55.1
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.9e-38 163.3 158 55.1
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 6.6e-38 162.5 294 37.8
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 1.1e-37 161.8 175 49.7
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 1.5e-37 161.4 321 37.4
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.9e-37 161.0 316 36.7
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 3.3e-37 160.2 290 36.2
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 4.3e-37 159.8 360 35.8
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 5.6e-37 159.5 315 36.8
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-36 157.9 282 36.9
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.6e-36 157.9 312 37.8
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 3.6e-36 156.8 154 52.6
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 4.8e-36 156.4 307 35.8
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.2e-36 156.0 291 38.5
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 6.2e-36 156.0 316 36.7
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.4e-35 154.8 324 34.9
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.4e-35 154.8 333 35.1
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.4e-35 154.8 318 36.2
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 2.4e-35 154.1 321 36.4
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.1e-35 153.7 281 38.1
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 5.3e-35 152.9 306 35.9
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 6.9e-35 152.5 316 37.3
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 9.0e-35 152.1 314 37.3
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.2e-34 151.8 289 38.4
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 5.8e-34 149.4 306 35.6
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 7.6e-34 149.1 386 33.4
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 9.9e-34 148.7 366 34.4
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.7e-33 147.9 342 33.9
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.7e-33 147.9 317 35.0
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 8.4e-33 145.6 147 51.0
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.1e-32 145.2 280 37.9
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.9e-32 144.4 318 34.9
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.2e-32 143.3 303 35.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 7.1e-32 142.5 212 42.5
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.5e-31 140.2 341 34.0
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 6.6e-30 136.0 315 34.9
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.5e-29 134.0 156 45.5
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 5.6e-29 132.9 309 35.3
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 5.6e-29 132.9 309 35.3
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 9.6e-29 132.1 320 33.1
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 9.6e-29 132.1 305 32.8
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.6e-28 131.3 315 34.0
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 2.1e-28 131.0 207 42.5
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 2.1e-28 131.0 333 31.8
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 4.0e-27 126.7 276 34.8
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 9.0e-27 125.6 308 35.4
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 2.0e-26 124.4 312 33.7
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 4.5e-26 123.2 166 45.8
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 4.5e-26 123.2 166 45.8
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 4.5e-26 123.2 304 33.9
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 7.6e-26 122.5 139 48.9
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 1.3e-25 121.7 240 35.4
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.7e-25 121.3 385 30.9
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.8e-25 120.2 308 30.2
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 4.9e-25 119.8 167 46.1
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 4.9e-25 119.8 310 31.9
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.4e-24 118.2 319 32.6
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 2.4e-24 117.5 161 42.2
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.4e-24 117.5 156 41.0
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 3.2e-24 117.1 92 60.9
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 3.2e-24 117.1 336 31.2
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.0e-22 112.1 232 34.1
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.0e-22 112.1 109 50.5
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.3e-22 111.7 308 32.5
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.3e-22 111.7 308 32.5
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.8e-22 111.3 339 28.3
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 2.3e-22 110.9 248 37.9
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 8.7e-22 109.0 235 37.0
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 4.3e-21 106.7 246 33.7
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 2.8e-20 104.0 308 28.9
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 2.8e-20 104.0 176 37.5
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.4e-19 100.9 93 60.2
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 6.9e-19 99.4 213 38.0
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 2.0e-18 97.8 291 30.6
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 2.0e-18 97.8 102 50.0
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.6e-18 95.9 78 51.3
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.0e-17 95.5 310 31.0
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.2e-17 94.4 111 45.9
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.1e-13 82.0 214 31.3
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 6.2e-12 76.3 322 27.6
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 2.4e-11 74.3 125 36.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 1.2e-10 72.0 245 29.4
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 3.4e-10 70.5 182 33.5
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.7e-09 68.2 150 30.7
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.9e-09 67.4 87 43.7
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.1e-08 65.5 54 53.7
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.7e-07 60.8 123 31.7
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 2.7e-07 60.8 64 46.9
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 6.1e-07 59.7 89 38.2


User provided reference genes

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