Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 2796.9 1390 100.0
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 2209.1 1441 78.4
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 2168.3 1406 78.2
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1722.2 1553 58.7
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1622.4 1522 57.0
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1596.6 1523 55.3
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1588.5 1551 55.3
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1587.0 1520 55.4
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1582.0 1513 55.8
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1578.9 1520 57.0
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1551.2 1522 54.7
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1532.3 1519 54.8
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1522.7 1506 54.6
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1521.1 1516 54.1
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1519.6 1520 54.0
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1514.2 1515 54.3
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1507.3 1511 54.0
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1505.7 1470 54.9
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1499.6 1502 52.2
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1499.6 1515 53.8
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1498.8 1488 54.2
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1498.8 1523 53.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1498.8 1517 53.8
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1497.6 1508 53.8
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1496.1 1514 53.5
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1494.2 1516 54.1
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1491.9 1520 53.0
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1491.9 1514 52.6
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1481.8 1491 54.1
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1479.5 1516 52.1
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1479.5 1536 53.1
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1479.2 1610 51.1
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1476.5 1466 54.6
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1474.1 1522 52.6
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1473.8 1524 53.1
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1467.2 1481 53.7
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1466.1 1512 52.9
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1462.2 1509 52.3
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1458.7 1560 51.3
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1458.0 1556 51.6
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1451.8 1550 52.1
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1449.1 1517 52.0
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1448.7 1517 52.1
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1445.6 1474 53.2
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1444.9 1533 50.9
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1434.1 1602 50.2
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1431.8 1508 51.5
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1426.0 1520 52.3
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1415.6 1416 53.7
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1406.0 1493 51.2
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1402.1 1508 51.3
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1401.7 1473 51.3
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1401.3 1508 51.3
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1399.8 1484 51.3
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1399.8 1484 51.3
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1395.9 1480 51.1
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1393.6 1465 51.2
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1390.6 1492 50.6
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1390.2 1516 51.1
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1389.8 1503 50.8
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1389.4 1511 50.2
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1388.2 1498 50.2
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1387.9 1508 50.8
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1387.5 1513 51.0
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1387.5 1485 51.0
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1386.7 1573 49.2
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1385.5 1504 50.3
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1382.5 1515 51.1
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1377.8 1509 50.1
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1376.7 1484 50.3
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1375.1 1505 50.4
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1375.1 1485 50.3
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1371.3 1512 49.5
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1370.5 1511 49.9
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1369.0 1476 50.5
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1368.2 1511 49.8
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1367.8 1522 50.3
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1361.3 1522 49.6
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1358.6 1516 50.1
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1350.1 1554 48.9
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1350.1 1494 50.0
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1334.7 1502 49.5
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1329.3 1489 49.2
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1286.6 1337 53.6
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1251.1 1404 48.4
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1228.4 1599 45.0
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1219.5 1460 48.7
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1214.1 1347 49.8
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1208.7 1346 50.7
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1204.9 1301 51.0
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1172.9 1538 45.0
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1152.9 1430 46.1
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1125.5 1116 55.7
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1093.6 1522 42.6
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 3.3e-307 1058.9 1097 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 6.8e-260 901.7 1592 36.6
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.1e-238 831.2 1001 47.0
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 2.8e-189 667.2 889 42.1
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 2.8e-189 667.2 1422 33.1
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.3e-167 594.3 482 66.2
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.5e-166 591.7 483 65.0
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 6.6e-138 496.5 1034 31.9
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 2.6e-134 484.6 687 41.8
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 4.6e-99 367.5 412 48.5
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.1e-63 248.4 589 29.5
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 3.8e-53 214.9 183 56.8
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 2.9e-40 172.2 163 57.7
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 4.3e-36 158.3 107 71.0
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 5.4e-31 141.4 93 72.0
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 4.6e-30 138.3 89 64.0
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 7.6e-25 120.9 101 58.4
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 9.9e-25 120.6 100 60.0
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.6e-22 113.2 88 64.8
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.6e-22 113.2 88 64.8
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 9.6e-20 104.0 67 80.6
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.4e-18 100.1 72 73.6
HanXRQChr15g0483621 Helianthus annuus HOM05D055280 ORTHO05D008092 4.4e-09 68.6 33 97.0
HanXRQChr17g0538801 Helianthus annuus HOM05D055280 ORTHO05D008092 4.4e-09 68.6 33 97.0
MCO04G335 Micromonas commoda HOM05D006693 ORTHO05D008092 4.9e-08 65.1 125 33.6
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 4.6e-06 58.5 71 49.3


User provided reference genes

Program Settings