Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 3.2e-119 431.8 219 100.0
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.1e-74 283.9 214 69.2
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 3.8e-64 248.8 160 78.1
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 8.2e-51 204.5 158 67.7
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.4e-50 203.8 203 56.2
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 2.6e-49 199.5 152 67.8
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 1.3e-48 197.2 207 57.0
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.3e-48 197.2 214 53.3
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 1.3e-48 197.2 214 53.3
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 2.9e-48 196.1 227 54.2
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 5.0e-48 195.3 157 61.8
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 5.0e-48 195.3 155 65.8
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 8.5e-48 194.5 140 67.9
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 1.1e-47 194.1 145 69.0
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 1.9e-47 193.4 219 51.6
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 2.5e-47 193.0 204 54.9
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 3.2e-47 192.6 210 52.9
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 7.2e-47 191.4 207 54.1
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 9.4e-47 191.0 206 51.9
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 1.6e-46 190.3 214 53.7
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 1.6e-46 190.3 144 67.4
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 1.6e-46 190.3 215 53.0
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.6e-46 189.1 144 66.7
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 3.6e-46 189.1 215 53.0
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 6.1e-46 188.3 198 53.5
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 7.9e-46 188.0 208 50.5
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 3.0e-45 186.0 156 62.8
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 3.0e-45 186.0 159 61.0
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 3.0e-45 186.0 157 61.1
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 3.0e-45 186.0 141 67.4
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 6.7e-45 184.9 150 64.0
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 8.8e-45 184.5 145 66.2
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.1e-44 184.1 206 49.5
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.0e-44 183.3 145 65.5
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 2.6e-44 183.0 205 50.7
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 2.6e-44 183.0 148 64.2
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 4.4e-44 182.2 161 60.2
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 4.4e-44 182.2 161 60.2
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 5.7e-44 181.8 160 61.2
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 9.7e-44 181.0 132 68.2
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 1.3e-43 180.6 154 62.3
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 1.3e-43 180.6 155 61.3
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 2.2e-43 179.9 157 59.9
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 2.2e-43 179.9 162 58.0
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 2.8e-43 179.5 136 66.2
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 6.3e-43 178.3 149 63.1
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 8.2e-43 177.9 116 74.1
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.8e-42 176.8 131 67.2
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 3.1e-42 176.0 171 57.9
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 4.1e-42 175.6 156 60.3
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 5.3e-42 175.3 148 60.8
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 5.3e-42 175.3 173 54.9
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 4.5e-41 172.2 157 56.7
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 4.5e-41 172.2 151 54.3
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 7.7e-41 171.4 140 62.9
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 1.3e-40 170.6 130 62.3
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.3e-40 170.6 114 73.7
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 2.9e-40 169.5 135 63.7
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 2.9e-40 169.5 135 63.7
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 3.8e-40 169.1 140 61.4
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 5.0e-40 168.7 152 58.6
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 5.0e-40 168.7 135 64.4
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 6.5e-40 168.3 135 64.4
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 6.5e-40 168.3 126 66.7
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 8.5e-40 167.9 159 57.2
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 1.1e-39 167.5 119 67.2
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 1.9e-39 166.8 124 66.1
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 1.9e-39 166.8 161 57.1
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 3.2e-39 166.0 157 58.6
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 4.2e-39 165.6 214 49.5
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 4.2e-39 165.6 214 49.5
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 5.5e-39 165.2 113 69.9
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.6e-38 163.7 158 53.2
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 2.7e-38 162.9 160 55.0
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 2.7e-38 162.9 192 46.9
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 3.6e-38 162.5 160 54.4
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 6.1e-38 161.8 126 65.9
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.0e-37 161.0 224 43.3
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 1.0e-37 161.0 183 53.0
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 1.4e-37 160.6 200 49.0
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 3.9e-37 159.1 127 63.0
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 9.7e-36 154.5 128 62.5
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 9.7e-36 154.5 208 46.6
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 1.3e-35 154.1 207 45.4
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 4.8e-35 152.1 165 48.5
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 1.4e-34 150.6 208 45.2
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 1.8e-34 150.2 122 57.4
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 4.1e-34 149.1 169 49.1
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 5.3e-34 148.7 208 44.2
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 5.9e-33 145.2 150 56.7
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.3e-32 144.1 192 46.4
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.9e-32 142.9 131 50.4
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 6.1e-30 135.2 173 46.8
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 8.2e-27 124.8 143 45.5
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 1.8e-26 123.6 131 53.4
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.2e-25 120.9 110 58.2
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 2.2e-24 116.7 109 56.9
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 2.9e-24 116.3 139 48.9
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 5.0e-24 115.5 268 34.0
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 6.5e-24 115.2 224 39.3
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 8.5e-24 114.8 168 44.6
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.5e-23 113.2 148 44.6
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 2.1e-22 110.2 179 44.1
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 6.8e-21 105.1 158 39.2
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 4.8e-19 99.0 114 50.0
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 2.4e-18 96.7 73 64.4
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.2e-14 84.3 113 41.6
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 2.0e-12 77.0 108 38.9
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 2.6e-12 76.6 137 36.5
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 4.9e-11 72.4 56 64.3
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 9.2e-10 68.2 130 35.4
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 4.5e-09 65.9 170 32.9
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 1.0e-08 64.7 170 31.8
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.3e-07 59.3 112 26.8
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 5.6e-07 58.9 174 28.7
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 1.2e-06 57.8 172 31.4
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 2.1e-06 57.0 82 41.5
AagrBONN_evm.TU.Sc2ySwM_117.94 Anthoceros agrestis HOM05D007263 ORTHO05D009187 3.6e-06 56.2 73 45.2
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 6.1e-06 55.5 117 32.5
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 8.0e-06 55.1 80 37.5


User provided reference genes

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