Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 1.2e-209 733.0 382 100.0
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 9.9e-177 623.6 380 84.5
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 8.1e-171 604.0 382 83.0
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 3.3e-148 528.9 384 71.4
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 2.1e-147 526.2 384 70.8
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.4e-146 523.5 385 70.9
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 9.0e-146 520.8 378 74.3
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 3.4e-145 518.8 387 73.9
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 3.4e-145 518.8 384 70.8
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 3.4e-145 518.8 380 72.4
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 4.5e-145 518.5 389 70.7
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 1.3e-144 516.9 381 71.4
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 2.2e-144 516.2 385 70.1
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 1.1e-143 513.8 344 78.5
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.4e-143 513.5 346 76.6
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 3.2e-143 512.3 385 70.6
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 4.2e-143 511.9 387 71.3
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 4.2e-143 511.9 347 76.1
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 1.6e-142 510.0 382 71.7
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 2.7e-142 509.2 390 70.0
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 3.5e-142 508.8 376 72.3
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.0e-141 507.3 378 70.9
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 2.3e-141 506.1 379 70.4
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 5.1e-141 505.0 379 70.2
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 6.7e-141 504.6 374 71.4
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.1e-140 503.8 333 77.5
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 1.1e-140 503.8 348 77.9
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 1.1e-140 503.8 384 70.1
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-140 502.7 375 69.9
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-140 502.7 375 69.9
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 2.5e-140 502.7 332 77.7
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 2.5e-140 502.7 393 67.7
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.3e-140 502.3 379 69.7
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 1.3e-139 500.4 380 68.4
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.3e-139 500.4 299 82.9
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 4.8e-139 498.4 342 76.6
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 4.8e-139 498.4 338 75.1
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 8.2e-139 497.7 384 69.8
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 8.2e-139 497.7 382 69.4
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.8e-138 496.5 380 67.4
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 2.4e-138 496.1 371 71.2
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 3.1e-138 495.7 341 75.4
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 3.1e-138 495.7 328 75.9
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 4.0e-138 495.4 373 70.8
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 6.9e-138 494.6 336 76.5
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 9.0e-138 494.2 342 76.0
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 9.0e-138 494.2 343 73.8
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 2.6e-137 492.7 375 69.9
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 4.5e-137 491.9 389 68.1
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 1.0e-136 490.7 298 81.2
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.3e-136 490.3 373 70.0
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.3e-136 490.3 333 75.7
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 2.9e-136 489.2 373 68.6
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 2.9e-136 489.2 298 81.2
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 2.9e-136 489.2 420 64.3
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 3.8e-136 488.8 359 73.3
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.4e-135 486.9 377 67.9
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 7.1e-135 484.6 299 79.3
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 7.1e-135 484.6 442 62.0
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.2e-134 483.8 352 71.0
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 1.6e-134 483.4 334 74.9
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 2.1e-134 483.0 333 74.5
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 2.7e-134 482.6 382 68.1
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 4.6e-134 481.9 332 74.1
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 4.6e-134 481.9 327 76.1
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 3.0e-133 479.2 352 72.4
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 3.9e-133 478.8 349 71.6
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 5.1e-133 478.4 295 79.0
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.6e-131 473.4 377 67.9
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 2.2e-131 473.0 337 73.6
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 8.2e-131 471.1 368 66.0
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.1e-130 470.7 387 61.8
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 1.8e-130 469.9 341 70.1
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 3.1e-130 469.2 350 69.4
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 5.3e-130 468.4 341 70.7
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 5.3e-130 468.4 335 72.8
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 9.0e-130 467.6 384 65.6
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 4.5e-129 465.3 335 71.9
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 1.3e-128 463.8 347 66.9
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 2.9e-128 462.6 290 79.7
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 3.8e-128 462.2 350 66.9
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 5.0e-128 461.8 385 62.6
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 8.5e-128 461.1 385 62.6
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.4e-127 460.3 380 62.4
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.4e-127 460.3 387 63.3
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 3.2e-127 459.1 386 62.2
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 4.2e-127 458.8 296 76.0
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 5.5e-127 458.4 389 62.5
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 9.4e-127 457.6 382 62.0
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 2.1e-126 456.4 390 61.3
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 6.1e-126 454.9 340 67.9
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 7.9e-126 454.5 341 67.2
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 1.0e-125 454.1 342 67.5
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 1.0e-125 454.1 342 67.5
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.0e-125 454.1 281 79.0
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 1.8e-125 453.4 392 61.0
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 5.1e-125 451.8 285 76.5
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 8.8e-125 451.1 303 72.9
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 2.0e-124 449.9 404 60.4
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.0e-124 449.9 303 72.6
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.3e-123 447.2 282 77.7
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 3.7e-123 445.7 282 77.7
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.8e-123 445.3 279 77.4
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 4.8e-123 445.3 338 69.5
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 1.8e-122 443.4 300 74.0
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 4.1e-122 442.2 282 76.6
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.2e-121 440.7 283 76.7
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.2e-121 440.7 283 76.7
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 1.5e-121 440.3 278 75.5
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.0e-121 439.9 282 76.2
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 2.0e-121 439.9 281 75.4
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.6e-121 439.5 282 76.2
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 5.9e-121 438.3 276 77.5
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 5.9e-121 438.3 272 78.3
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 5.9e-121 438.3 276 77.5
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 5.9e-121 438.3 276 77.5
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 5.9e-121 438.3 276 77.5
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 1.0e-120 437.6 275 77.5
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.9e-120 436.0 350 64.6
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 3.6e-118 429.1 296 73.6
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.0e-113 413.3 344 62.5
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 4.5e-113 412.1 291 74.2
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 1.5e-108 397.1 264 75.0
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 3.1e-106 389.4 331 60.7
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 1.7e-104 383.6 234 81.6
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 8.5e-104 381.3 261 75.1
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 2.6e-100 369.8 213 85.9
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 1.6e-94 350.5 306 63.1
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 8.8e-93 344.7 337 57.9
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 6.3e-91 338.6 190 89.5
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.7e-89 333.2 282 65.2
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.1e-87 327.8 282 64.5
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 3.3e-87 326.2 271 59.8
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 4.2e-87 325.9 273 57.5
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.4e-85 320.9 273 58.6
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 5.9e-81 305.4 259 65.6
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 1.0e-80 304.7 297 57.9
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 2.3e-72 276.9 162 91.4
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 3.3e-71 273.1 264 58.3
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 4.4e-68 262.7 255 51.0
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 3.3e-63 246.5 165 73.3
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 6.2e-62 242.3 180 68.9
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-61 241.1 179 69.3
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 3.4e-60 236.5 179 68.2
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 4.9e-59 232.6 135 84.4
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 3.2e-42 176.8 115 75.7
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-41 174.9 103 81.6
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-41 174.9 116 74.1
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 4.0e-37 159.8 157 52.2
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-34 151.8 131 63.4
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 8.7e-32 142.1 77 85.7
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 5.6e-31 139.4 77 83.1
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 2.1e-30 137.5 79 83.5
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.7e-27 127.9 98 67.3
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 4.2e-26 123.2 62 88.7
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 1.2e-25 121.7 114 48.2
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 3.9e-24 116.7 90 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 1.5e-23 114.8 106 50.9
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 4.8e-22 109.8 72 72.2
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 1.4e-21 108.2 65 83.1
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 3.8e-19 100.1 104 54.8
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 2.5e-18 97.4 141 41.1
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 9.3e-18 95.5 55 85.5
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 2.1e-17 94.4 59 83.1
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 2.8e-14 84.0 59 64.4
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 6.3e-14 82.8 55 76.4
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 2.2e-06 57.8 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 2.2e-06 57.8 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 2.2e-06 57.8 28 92.9


User provided reference genes

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