Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 7.0e-99 364.0 191 100.0
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 4.3e-64 248.4 192 69.8
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.6e-63 245.4 191 73.3
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.4e-62 242.7 189 70.4
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 8.4e-52 207.6 196 66.8
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.5e-48 196.1 189 61.9
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.5e-48 196.1 188 63.8
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 2.5e-48 196.1 189 62.4
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.6e-45 186.0 187 59.9
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 4.5e-45 185.3 195 58.5
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 2.2e-44 183.0 189 60.3
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 2.9e-44 182.6 190 58.9
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 3.2e-43 179.1 190 57.9
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 4.2e-43 178.7 198 55.6
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 9.3e-43 177.6 216 53.2
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.6e-42 175.6 191 58.1
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 7.9e-42 174.5 236 49.6
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.0e-41 174.1 168 63.1
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.0e-41 172.6 192 56.8
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 5.1e-41 171.8 190 57.4
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.1e-41 171.8 191 57.6
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 6.7e-41 171.4 216 51.9
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 8.7e-41 171.0 198 54.5
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 1.5e-40 170.2 196 56.6
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 4.3e-40 168.7 196 55.6
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 5.7e-40 168.3 189 56.6
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.7e-40 168.3 197 52.3
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 7.4e-40 167.9 195 55.9
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.3e-39 167.2 198 50.5
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.6e-39 166.8 198 51.5
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.2e-39 166.4 195 54.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.2e-39 166.4 195 54.9
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.2e-39 166.4 191 53.4
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 2.8e-39 166.0 192 54.2
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.8e-38 163.3 195 52.3
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.3e-38 161.8 196 55.6
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.2e-37 160.6 190 53.2
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.5e-37 160.2 197 53.3
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.5e-37 160.2 197 52.8
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 2.0e-37 159.8 187 52.9
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.0e-37 159.8 192 52.6
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.6e-37 159.5 194 53.1
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 4.5e-37 158.7 186 54.3
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 4.5e-37 158.7 195 52.8
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.5e-37 158.7 191 52.4
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 5.9e-37 158.3 191 51.8
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.0e-36 157.5 192 51.6
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.7e-36 156.8 173 55.5
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.7e-36 156.8 173 55.5
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.7e-36 156.8 196 53.1
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 3.8e-36 155.6 193 52.8
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 3.8e-36 155.6 192 52.6
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 3.8e-36 155.6 227 48.0
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.0e-36 155.2 196 53.1
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.0e-36 155.2 196 53.1
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 6.5e-36 154.8 194 54.6
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-35 154.1 195 51.8
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.1e-35 154.1 202 49.0
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.9e-35 153.3 195 51.8
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 3.2e-35 152.5 189 51.3
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.2e-35 152.1 194 50.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 5.5e-35 151.8 178 57.3
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 9.4e-35 151.0 192 53.6
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 9.4e-35 151.0 202 47.5
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 2.1e-34 149.8 196 49.0
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 4.6e-34 148.7 197 50.3
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 6.1e-34 148.3 196 52.0
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 3.0e-33 146.0 287 40.1
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 5.1e-33 145.2 262 42.0
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 5.1e-33 145.2 262 42.0
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.0e-32 143.3 207 46.4
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.0e-32 143.3 207 46.4
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 3.3e-32 142.5 224 46.0
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 5.7e-32 141.7 195 49.7
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 7.4e-32 141.4 201 45.8
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.3e-31 140.6 190 48.9
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 4.8e-31 138.7 204 46.6
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.8e-30 136.7 189 45.0
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.8e-30 136.7 109 67.0
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 2.4e-30 136.3 113 63.7
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.1e-30 135.6 178 51.7
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 5.3e-30 135.2 185 48.6
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 6.9e-30 134.8 206 45.1
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 6.9e-30 134.8 109 65.1
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 5.9e-29 131.7 192 49.0
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 7.7e-29 131.3 198 48.0
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.3e-28 130.6 184 49.5
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.2e-28 129.8 201 45.3
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 6.5e-28 128.3 101 68.3
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 6.5e-28 128.3 101 68.3
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.4e-27 127.1 199 43.7
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.4e-27 127.1 207 43.0
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 1.9e-27 126.7 246 41.5
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.9e-27 126.7 201 44.3
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 3.2e-27 125.9 129 58.1
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 9.4e-27 124.4 198 42.9
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 9.4e-27 124.4 129 53.5
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 2.1e-26 123.2 109 62.4
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.7e-26 122.9 108 62.0
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.6e-26 122.5 151 51.7
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 6.1e-26 121.7 186 45.7
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 8.8e-25 117.9 196 44.4
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.1e-24 117.5 121 57.0
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.5e-24 117.1 111 58.6
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 2.6e-24 116.3 252 35.7
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.8e-23 112.8 236 37.3
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 4.8e-23 112.1 98 61.2
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 6.3e-23 111.7 284 37.0
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 3.1e-22 109.4 108 59.3
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.1e-22 109.4 297 34.0
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.1e-22 109.0 170 42.9
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 5.3e-22 108.6 195 42.6
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 5.3e-22 108.6 192 41.7
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 9.1e-22 107.8 104 59.6
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.5e-21 105.9 194 42.3
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 7.7e-21 104.8 194 41.2
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 2.2e-20 103.2 205 39.0
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 3.8e-20 102.4 222 38.3
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 3.8e-20 102.4 193 40.4
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 6.1e-18 95.1 157 42.7
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 2.3e-17 93.2 69 68.1
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 3.0e-17 92.8 99 52.5
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.6e-16 89.7 203 36.5
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.3e-16 89.4 164 39.6
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 2.8e-15 86.3 100 52.0
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 5.9e-13 78.6 114 43.9
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 5.9e-13 78.6 66 63.6
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 5.9e-13 78.6 118 44.1
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.7e-12 77.0 180 41.1
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.2e-12 76.6 114 43.0
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.9e-12 76.3 115 43.5
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 3.8e-12 75.9 62 66.1
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 5.0e-12 75.5 109 42.2
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 6.5e-12 75.1 262 31.7
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.5e-11 73.2 98 42.9
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.5e-11 73.2 98 42.9
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.5e-11 73.2 98 42.9
Lsat_1_v5_gn_5_53240 Lactuca sativa HOM05D004014 ORTHO05D018183 3.2e-11 72.8 68 58.8
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 7.2e-11 71.6 258 30.2
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.2e-08 64.3 62 59.7
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.5e-08 61.6 67 50.7
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 4.8e-07 58.9 144 33.3
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 4.8e-07 58.9 76 52.6
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 1.4e-06 57.4 59 64.4
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 4.1e-06 55.8 81 50.6
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 4.1e-06 55.8 81 50.6
Mapoly0005s0173 Marchantia polymorpha HOM05D028980 ORTHO05D026613 9.1e-06 54.7 209 29.7


User provided reference genes

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