Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0082871 Helianthus annuus HOM05D003482 ORTHO05D004194 5.0e-207 724.2 355 100.0
HanXRQChr03g0082881 Helianthus annuus HOM05D003482 ORTHO05D004194 8.1e-149 530.8 384 68.5
HanXRQChr13g0411821 Helianthus annuus HOM05D003482 ORTHO05D004194 8.4e-146 520.8 382 67.5
ECA240G1915 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.2e-144 516.9 384 66.9
Lsat_1_v5_gn_5_59000 Lactuca sativa HOM05D003482 ORTHO05D004194 3.1e-140 502.3 366 68.3
Lsat_1_v5_gn_5_60380 Lactuca sativa HOM05D003482 ORTHO05D004194 2.2e-138 496.1 374 65.5
HanXRQChr13g0407961 Helianthus annuus HOM05D003482 ORTHO05D004194 7.8e-136 487.6 359 67.7
Lsat_1_v5_gn_5_58881 Lactuca sativa HOM05D003482 ORTHO05D004194 1.5e-134 483.4 365 66.0
Lsat_1_v5_gn_5_58921 Lactuca sativa HOM05D003482 ORTHO05D004194 2.8e-133 479.2 361 68.1
ECA240G2590 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.6e-133 478.8 357 67.5
Lsat_1_v5_gn_5_60400 Lactuca sativa HOM05D003482 ORTHO05D004194 3.6e-133 478.8 365 66.0
HanXRQChr13g0411841 Helianthus annuus HOM05D003482 ORTHO05D004194 8.1e-133 477.6 356 67.4
Lsat_1_v5_gn_5_58361 Lactuca sativa HOM05D003482 ORTHO05D004194 3.8e-130 468.8 367 64.9
HanXRQChr13g0411981 Helianthus annuus HOM05D003482 ORTHO05D004194 1.9e-129 466.5 358 67.0
ECA240G4147 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.2e-129 465.7 359 64.9
HanXRQChr13g0412011 Helianthus annuus HOM05D003482 ORTHO05D004194 3.9e-127 458.8 351 65.0
ECA240G0557 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.3e-126 455.7 351 65.0
ECA240G0756 Erigeron canadensis HOM05D003482 ORTHO05D004194 6.2e-125 451.4 360 62.8
HanXRQChr03g0081371 Helianthus annuus HOM05D003482 ORTHO05D004194 1.4e-124 450.3 357 60.5
Lsat_1_v5_gn_5_60480 Lactuca sativa HOM05D003482 ORTHO05D004194 3.9e-119 432.2 363 60.3
Lsat_1_v5_gn_5_60420 Lactuca sativa HOM05D003482 ORTHO05D004194 1.5e-118 430.3 371 58.8
Actinidia14155 Actinidia chinensis HOM05D003482 ORTHO05D004194 4.3e-118 428.7 415 53.0
Atru.chr7.2677 Acer truncatum HOM05D003482 ORTHO05D004194 3.7e-117 425.6 401 55.1
Prupe.1G455100 Prunus persica HOM05D003482 ORTHO05D004194 8.2e-117 424.5 399 54.9
Dinv11875 Davidia involucrata HOM05D003482 ORTHO05D004194 1.1e-116 424.1 415 53.5
Eucgr.C03989 Eucalyptus grandis HOM05D003482 ORTHO05D004194 1.4e-116 423.7 416 51.9
TWI34G0517 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 1.4e-116 423.7 359 57.7
Potri.018G003400 Populus trichocarpa HOM05D003482 ORTHO05D004194 3.1e-116 422.5 419 52.7
ECA240G3793 Erigeron canadensis HOM05D003482 ORTHO05D004194 4.0e-116 422.2 322 65.8
Cfa013321 Carpinus fangiana HOM05D003482 ORTHO05D004194 1.5e-115 420.2 413 53.5
Ciclev10007354m.g Citrus clementina HOM05D003482 ORTHO05D004194 2.6e-115 419.5 420 52.6
TWI32G0788 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 7.6e-115 417.9 422 51.2
ECA240G2186 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.2e-114 416.4 326 64.4
Sabra18G0008800 Salix brachista HOM05D003482 ORTHO05D004194 6.5e-114 414.8 417 52.0
PSO423G0073 Papaver somniferum HOM05D003482 ORTHO05D004194 8.4e-114 414.5 392 53.1
PSO596G0002 Papaver somniferum HOM05D003482 ORTHO05D004194 8.4e-114 414.5 392 53.1
COL.COLO4_18622 Corchorus olitorius HOM05D003482 ORTHO05D004194 1.4e-113 413.7 364 57.7
FvH4_2g36372 Fragaria vesca HOM05D003482 ORTHO05D004194 1.9e-113 413.3 360 58.3
HanXRQChr13g0412001 Helianthus annuus HOM05D003482 ORTHO05D004194 1.9e-113 413.3 338 64.8
COL.COLO4_18624 Corchorus olitorius HOM05D003482 ORTHO05D004194 2.5e-113 412.9 411 51.1
Aa31LG11G4020 Aethionema arabicum HOM05D003482 ORTHO05D004194 4.2e-113 412.1 411 51.6
Manes.16G137200 Manihot esculenta HOM05D003482 ORTHO05D004194 5.5e-113 411.8 387 54.3
AL6G36450 Arabidopsis lyrata HOM05D003482 ORTHO05D004194 7.1e-113 411.4 414 51.2
FAN27G0167 Fragaria x ananassa HOM05D003482 ORTHO05D004194 7.1e-113 411.4 360 58.3
Migut.A00459 Erythranthe guttata HOM05D003482 ORTHO05D004194 9.3e-113 411.0 376 56.6
Lalb_Chr14g0362391 Lupinus albus HOM05D003482 ORTHO05D004194 9.3e-113 411.0 391 53.7
Aqoxy7G02727 Aquilegia oxysepala HOM05D003482 ORTHO05D004194 2.7e-112 409.5 414 51.4
Cpa.g.sc328.6 Carica papaya HOM05D003482 ORTHO05D004194 2.7e-112 409.5 412 51.7
QL12p026010 Quercus lobata HOM05D003482 ORTHO05D004194 2.7e-112 409.5 417 52.0
Lj1g0006594 Lotus japonicus HOM05D003482 ORTHO05D004194 4.6e-112 408.7 402 53.0
CARHR188650 Cardamine hirsuta HOM05D003482 ORTHO05D004194 6.1e-112 408.3 407 51.1
DCAR_004550 Daucus carota HOM05D003482 ORTHO05D004194 6.1e-112 408.3 421 51.3
Thecc.09G004000 Theobroma cacao HOM05D003482 ORTHO05D004194 7.9e-112 407.9 414 51.7
Carub.0006s2266 Capsella rubella HOM05D003482 ORTHO05D004194 1.0e-111 407.5 408 51.5
Psat6g006000 Pisum sativum HOM05D003482 ORTHO05D004194 1.0e-111 407.5 401 53.4
BolC2t12059H Brassica oleracea HOM05D003482 ORTHO05D004194 1.8e-111 406.8 392 53.6
A02p40080 Brassica napus HOM05D003482 ORTHO05D004194 2.3e-111 406.4 393 53.4
BcaC03g17943 Brassica carinata HOM05D003482 ORTHO05D004194 3.0e-111 406.0 392 53.3
BraA02t08971Z Brassica rapa HOM05D003482 ORTHO05D004194 3.0e-111 406.0 392 53.6
TAR626G0827 Trochodendron aralioides HOM05D003482 ORTHO05D004194 3.9e-111 405.6 404 52.5
FvH4_2g36370 Fragaria vesca HOM05D003482 ORTHO05D004194 5.1e-111 405.2 401 52.4
Potri.006G276600 Populus trichocarpa HOM05D003482 ORTHO05D004194 5.1e-111 405.2 413 51.8
Sed0005804 Sechium edule HOM05D003482 ORTHO05D004194 5.1e-111 405.2 414 50.0
Manes.03G001800 Manihot esculenta HOM05D003482 ORTHO05D004194 6.7e-111 404.8 403 52.1
Thhalv10003586m.g Eutrema salsugineum HOM05D003482 ORTHO05D004194 8.7e-111 404.4 403 51.6
AT5G24810 Arabidopsis thaliana HOM05D003482 ORTHO05D004194 1.9e-110 403.3 407 51.4
Sabra18G0009100 Salix brachista HOM05D003482 ORTHO05D004194 1.9e-110 403.3 446 49.1
CsaV3_3G047320 Cucumis sativus L. HOM05D003482 ORTHO05D004194 3.3e-110 402.5 411 49.6
Duzib168G0916 Durio zibethinus HOM05D003482 ORTHO05D004194 3.3e-110 402.5 402 51.7
C02p60040 Brassica napus HOM05D003482 ORTHO05D004194 4.3e-110 402.1 392 52.8
Gohir.D05G068400 Gossypium hirsutum HOM05D003482 ORTHO05D004194 4.3e-110 402.1 401 52.6
Gorai.009G069300 Gossypium raimondii HOM05D003482 ORTHO05D004194 4.3e-110 402.1 401 52.6
TAR506G0002 Trochodendron aralioides HOM05D003482 ORTHO05D004194 4.3e-110 402.1 417 50.8
MELO3C003597.2 Cucumis melo HOM05D003482 ORTHO05D004194 5.7e-110 401.7 415 49.9
Gohir.A05G066000 Gossypium hirsutum HOM05D003482 ORTHO05D004194 5.7e-110 401.7 401 53.1
Sabra18G0002200 Salix brachista HOM05D003482 ORTHO05D004194 5.7e-110 401.7 446 48.7
CiPaw.07G208900 Carya illinoinensis HOM05D003482 ORTHO05D004194 9.7e-110 401.0 417 50.1
PGR044G0156 Punica granatum HOM05D003482 ORTHO05D004194 1.3e-109 400.6 399 51.6
Sp2g22640 Schrenkiella parvula HOM05D003482 ORTHO05D004194 1.3e-109 400.6 411 51.6
BcaB07g29924 Brassica carinata HOM05D003482 ORTHO05D004194 2.2e-109 399.8 394 52.3
ECA233G2479 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.8e-109 399.4 331 60.4
C07p42960 Brassica napus HOM05D003482 ORTHO05D004194 4.8e-109 398.7 401 50.1
BolC7t44825H Brassica oleracea HOM05D003482 ORTHO05D004194 4.8e-109 398.7 401 50.1
VMungo0647G1298 Vigna mungo HOM05D003482 ORTHO05D004194 6.3e-109 398.3 403 50.1
MSTRG.11822 Avicennia marina HOM05D003482 ORTHO05D004194 8.2e-109 397.9 397 53.7
Ca_12826_v3 Cicer arietinum L. HOM05D003482 ORTHO05D004194 8.2e-109 397.9 401 51.9
MBI13_g31548_MAGBIO Magnolia biondii HOM05D003482 ORTHO05D004194 8.2e-109 397.9 398 51.5
Sabra06G0214300 Salix brachista HOM05D003482 ORTHO05D004194 1.4e-108 397.1 416 51.9
Sopen08g022930 Solanum pennellii HOM05D003482 ORTHO05D004194 1.4e-108 397.1 398 50.8
BraA06t26483Z Brassica rapa HOM05D003482 ORTHO05D004194 1.8e-108 396.7 401 50.1
CANSAT25G1343 Cannabis sativa HOM05D003482 ORTHO05D004194 1.8e-108 396.7 418 51.4
Sc14g0002010 Simmondsia chinensis HOM05D003482 ORTHO05D004194 2.4e-108 396.4 394 53.8
Glyma.14G139800 Glycine max HOM05D003482 ORTHO05D004194 4.1e-108 395.6 404 50.7
Phvul.001G077100 Phaseolus vulgaris HOM05D003482 ORTHO05D004194 4.1e-108 395.6 403 50.1
PGSC0003DMG400029592 Solanum tuberosum HOM05D003482 ORTHO05D004194 4.1e-108 395.6 398 50.8
SGA_v2.0_scaffold27G11648 Striga asiatica HOM05D003482 ORTHO05D004194 4.1e-108 395.6 393 53.2
Haze_21807 Corylus avellana HOM05D003482 ORTHO05D004194 5.3e-108 395.2 439 49.2
A06p35580 Brassica napus HOM05D003482 ORTHO05D004194 1.2e-107 394.0 401 49.6
MD08G1123100 Malus domestica HOM05D003482 ORTHO05D004194 1.2e-107 394.0 410 50.2
Nn8g40986 Nelumbo nucifera HOM05D003482 ORTHO05D004194 1.5e-107 393.7 418 50.0
Lj7C753G1 Lonicera japonica HOM05D003482 ORTHO05D004194 2.0e-107 393.3 454 46.7
Hund03269 Selenicereus undatus HOM05D003482 ORTHO05D004194 2.0e-107 393.3 417 50.6
Lsat_1_v5_gn_5_60580 Lactuca sativa HOM05D003482 ORTHO05D004194 2.6e-107 392.9 471 48.0
Nitab4.5_0000970g0010 Nicotiana tabacum HOM05D003482 ORTHO05D004194 3.4e-107 392.5 402 50.7
THA.LOC104814963 Tarenaya hassleriana HOM05D003482 ORTHO05D004194 5.9e-107 391.7 407 51.6
Glyma.17G188300 Glycine max HOM05D003482 ORTHO05D004194 2.9e-106 389.4 405 49.9
BcaNung01256 Brassica carinata HOM05D003482 ORTHO05D004194 3.8e-106 389.0 395 50.1
Rhsim07G0170800 Rhododendron simsii HOM05D003482 ORTHO05D004194 1.9e-105 386.7 404 51.2
HPP92_015798 Vanilla planifolia HOM05D003482 ORTHO05D004194 3.2e-105 386.0 388 51.5
Peaxi162Scf00213g01025 Petunia axillaris HOM05D003482 ORTHO05D004194 7.2e-105 384.8 402 49.8
RcHm_v2.0_Chr6g0305511 Rosa chinensis HOM05D003482 ORTHO05D004194 7.2e-105 384.8 360 55.3
CAN.G195.3 Capsicum annuum HOM05D003482 ORTHO05D004194 7.9e-104 381.3 401 49.9
HPP92_015810 Vanilla planifolia HOM05D003482 ORTHO05D004194 7.9e-104 381.3 388 51.3
Hund19390 Selenicereus undatus HOM05D003482 ORTHO05D004194 1.4e-103 380.6 411 48.4
CDE05G0655 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 5.1e-103 378.6 398 50.0
ATR0626G323 Amborella trichopoda HOM05D003482 ORTHO05D004194 2.2e-101 373.2 388 51.5
Zm00001eb272880 Zea mays HOM05D003482 ORTHO05D004194 1.0e-98 364.4 397 49.1
arahy.Tifrunner.gnm1.ann1.N6E37M Arachis hypogaea HOM05D003482 ORTHO05D004194 1.5e-94 350.5 400 48.0
FAN20G1504 Fragaria x ananassa HOM05D003482 ORTHO05D004194 4.8e-93 345.5 401 46.9
MD15G1102100 Malus domestica HOM05D003482 ORTHO05D004194 1.8e-92 343.6 367 49.3
EL10Ac2g03705 Beta vulgaris HOM05D003482 ORTHO05D004194 2.4e-92 343.2 417 45.8
FAN15G0261 Fragaria x ananassa HOM05D003482 ORTHO05D004194 2.4e-92 343.2 401 47.1
TPR.G12040 Trifolium pratense HOM05D003482 ORTHO05D004194 3.2e-89 332.8 390 48.7
arahy.Tifrunner.gnm1.ann1.21Z9DD Arachis hypogaea HOM05D003482 ORTHO05D004194 4.2e-89 332.4 400 45.5
Pp3c5_19100 Physcomitrium patens HOM05D003482 ORTHO05D004194 1.6e-88 330.5 402 46.0
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 1.0e-87 327.8 461 42.1
MD15G1100800 Malus domestica HOM05D003482 ORTHO05D004194 1.5e-86 323.9 357 47.1
Pp3c16_18060 Physcomitrium patens HOM05D003482 ORTHO05D004194 4.4e-86 322.4 408 43.6
Lalb_Chr22g0361011 Lupinus albus HOM05D003482 ORTHO05D004194 1.4e-84 317.4 234 66.2
AagrBONN_evm.TU.Sc2ySwM_228.3219 Anthoceros agrestis HOM05D003482 ORTHO05D004194 2.4e-84 316.6 370 46.8
Medtr1g008980 Medicago truncatula HOM05D003482 ORTHO05D004194 5.0e-82 308.9 234 63.2
Mapoly0007s0194 Marchantia polymorpha HOM05D003482 ORTHO05D004194 5.5e-81 305.4 399 43.6
SMO353G0164 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 1.6e-80 303.9 373 44.2
Lsat_1_v5_gn_6_15541 Lactuca sativa HOM05D003482 ORTHO05D004194 1.0e-79 301.2 387 45.2
AagrBONN_evm.TU.Sc2ySwM_228.3217 Anthoceros agrestis HOM05D003482 ORTHO05D004194 7.5e-78 295.0 355 45.6
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.8e-76 290.4 347 48.7
SalBow4G3081 Salvia bowleyana HOM05D003482 ORTHO05D004194 1.2e-75 287.7 398 42.7
SMO353G0165 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 3.2e-73 279.6 383 41.8
CSS0039275 Camellia sinensis var. sinensis HOM05D003482 ORTHO05D004194 1.3e-61 241.1 164 67.7
Potri.018G004500 Populus trichocarpa HOM05D003482 ORTHO05D004194 2.2e-61 240.4 169 67.5
ECA240G1043 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.7e-61 239.6 227 57.3
SEGI_21174 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 1.4e-55 221.1 309 43.4
vmacro05100 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 6.8e-55 218.8 134 70.1
Nitab4.5_0000919g0060 Nicotiana tabacum HOM05D003482 ORTHO05D004194 3.4e-54 216.5 136 68.4
Oeu059294.1 Olea europaea HOM05D003482 ORTHO05D004194 3.4e-54 216.5 134 71.6
vmacro05099 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 6.4e-53 212.2 276 45.3
GSVIVG01035556001 Vitis vinifera HOM05D003482 ORTHO05D004194 7.8e-51 205.3 128 68.8
Oeu059293.1 Olea europaea HOM05D003482 ORTHO05D004194 1.6e-43 181.0 226 45.1
CBR_g4189 Chara braunii HOM05D003482 ORTHO05D004194 4.6e-43 179.5 147 53.1
Potri.018G003600 Populus trichocarpa HOM05D003482 ORTHO05D004194 3.1e-39 166.8 101 72.3
Cc00_g11230 Coffea canephora HOM05D003482 ORTHO05D004194 6.8e-39 165.6 268 37.3
Sabra18G0005800 Salix brachista HOM05D003482 ORTHO05D004194 5.8e-38 162.5 134 61.2
Sabra18G0007800 Salix brachista HOM05D003482 ORTHO05D004194 5.8e-38 162.5 134 61.2
PSO832G2792 Papaver somniferum HOM05D003482 ORTHO05D004194 1.8e-31 141.0 210 42.4
Sabra18G0012500 Salix brachista HOM05D000009 ORTHO05D000008 9.9e-30 135.2 148 48.6
SEGI_21512 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 1.7e-29 134.4 101 54.5
Nitab4.5_0000502g0210 Nicotiana tabacum HOM05D003482 ORTHO05D019565 1.9e-25 120.9 105 52.4
Lalb_Chr22g0361021 Lupinus albus HOM05D003482 ORTHO05D004194 1.6e-24 117.9 95 55.8
Solyc08g074280.4 Solanum lycopersicum HOM05D003482 ORTHO05D004194 1.9e-17 94.4 59 69.5
Lsat_1_v5_gn_5_60340 Lactuca sativa HOM05D003482 ORTHO05D004194 2.5e-17 94.0 62 66.1
PSO058G0001 Papaver somniferum HOM05D003482 ORTHO05D004194 8.1e-16 89.0 67 65.7
Lsat_1_v5_gn_5_60320 Lactuca sativa HOM05D003482 ORTHO05D004194 5.3e-15 86.3 69 63.8
Lsat_1_v5_gn_7_104720 Lactuca sativa HOM05D003482 ORTHO05D004194 3.8e-13 80.1 64 54.7
CDE05G2143 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 4.9e-13 79.7 99 49.5
Os06g0701300 Oryza sativa ssp. japonica HOM05D003482 ORTHO05D004194 1.6e-11 74.7 46 71.7
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 3.3e-09 67.0 71 50.7
Potri.012G082950 Populus trichocarpa HOM05D003482 ORTHO05D004194 5.8e-06 56.2 37 67.6


User provided reference genes

Program Settings