Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0082241 Helianthus annuus HOM05D000375 ORTHO05D000240 5.4e-69 264.2 135 100.0
Lsat_1_v5_gn_6_70601 Lactuca sativa HOM05D000375 ORTHO05D000240 5.8e-47 191.0 131 77.9
ECA233G0476 Erigeron canadensis HOM05D000375 ORTHO05D000240 2.9e-46 188.7 126 79.4
vmacro08825 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 8.7e-27 124.0 133 60.9
Actinidia31283 Actinidia chinensis HOM05D000375 ORTHO05D000240 2.5e-26 122.5 133 60.2
Duzib128G0614 Durio zibethinus HOM05D000375 ORTHO05D000240 1.3e-25 120.2 134 59.0
PSO443G0062 Papaver somniferum HOM05D000375 ORTHO05D000240 1.3e-25 120.2 145 54.5
PSO384G2858 Papaver somniferum HOM05D000375 ORTHO05D000240 4.8e-25 118.2 140 56.4
Rhsim04G0134400 Rhododendron simsii HOM05D000375 ORTHO05D000240 1.1e-24 117.1 135 60.0
Cc06_g05390 Coffea canephora HOM05D000375 ORTHO05D000240 1.4e-24 116.7 134 57.5
CSS0013015 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.8e-24 116.3 138 55.8
CSS0041727 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 2.4e-24 115.9 134 57.5
Dinv21241 Davidia involucrata HOM05D000375 ORTHO05D000240 2.4e-24 115.9 133 59.4
Nn2g14050 Nelumbo nucifera HOM05D000375 ORTHO05D000240 4.0e-24 115.2 134 56.0
Actinidia10395 Actinidia chinensis HOM05D000375 ORTHO05D000240 6.9e-24 114.4 146 54.8
Manes.08G022300 Manihot esculenta HOM05D000375 ORTHO05D000240 9.0e-24 114.0 131 58.8
Oeu039815.1 Olea europaea HOM05D000375 ORTHO05D000240 9.0e-24 114.0 141 51.8
Ciclev10011856m.g Citrus clementina HOM05D000375 ORTHO05D000240 2.6e-23 112.5 142 55.6
Prupe.7G115500 Prunus persica HOM05D000375 ORTHO05D000240 2.6e-23 112.5 144 53.5
QL07p040017 Quercus lobata HOM05D000375 ORTHO05D000240 3.4e-23 112.1 133 54.1
GSVIVG01033800001 Vitis vinifera HOM05D000375 ORTHO05D000240 3.4e-23 112.1 131 54.2
TAR636G1689 Trochodendron aralioides HOM05D000375 ORTHO05D000240 7.6e-23 110.9 144 52.8
Actinidia34353 Actinidia chinensis HOM05D000375 ORTHO05D000240 9.9e-23 110.5 146 53.4
Aqoxy2G01355 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 9.9e-23 110.5 131 52.7
Solyc10g083510.2 Solanum lycopersicum HOM05D000375 ORTHO05D000240 1.7e-22 109.8 138 57.2
TWI53G1523 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 2.2e-22 109.4 134 56.0
CAN.G1039.19 Capsicum annuum HOM05D000375 ORTHO05D000240 2.9e-22 109.0 136 52.9
Manes.09G058720 Manihot esculenta HOM05D000375 ORTHO05D000240 2.9e-22 109.0 136 55.1
Sopen10g032980 Solanum pennellii HOM05D000375 ORTHO05D000240 2.9e-22 109.0 139 56.8
Thecc.05G083300 Theobroma cacao HOM05D000375 ORTHO05D000240 3.8e-22 108.6 133 55.6
RcHm_v2.0_Chr3g0472411 Rosa chinensis HOM05D000375 ORTHO05D000240 4.9e-22 108.2 135 51.9
Eucgr.A01534 Eucalyptus grandis HOM05D000375 ORTHO05D000240 6.4e-22 107.8 135 51.9
Peaxi162Scf00163g00419 Petunia axillaris HOM05D000375 ORTHO05D000240 6.4e-22 107.8 133 54.1
Gohir.A09G137600 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.4e-21 106.7 137 53.3
PGSC0003DMG400028259 Solanum tuberosum HOM05D000375 ORTHO05D000240 2.4e-21 105.9 138 53.6
MSTRG.10355 Avicennia marina HOM05D000375 ORTHO05D000240 3.2e-21 105.5 137 53.3
Sopen09g003930 Solanum pennellii HOM05D000375 ORTHO05D000240 4.2e-21 105.1 141 54.6
Atru.chr8.1613 Acer truncatum HOM05D000375 ORTHO05D000240 5.4e-21 104.8 140 54.3
Nn6g35011 Nelumbo nucifera HOM05D000375 ORTHO05D000240 7.1e-21 104.4 115 55.7
Nitab4.5_0003541g0030 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.2e-20 103.6 133 54.1
Solyc09g009200.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 2.7e-20 102.4 141 52.5
MSTRG.19238 Avicennia marina HOM05D000375 ORTHO05D000240 6.0e-20 101.3 129 54.3
Oeu040806.1 Olea europaea HOM05D000375 ORTHO05D000240 7.9e-20 100.9 130 51.5
Peaxi162Scf00068g00018 Petunia axillaris HOM05D000375 ORTHO05D000240 7.9e-20 100.9 133 53.4
FAN05G1340 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.0e-19 100.5 138 47.8
FAN05G2461 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.0e-19 100.5 138 47.8
Gohir.D09G137000 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.3e-19 100.1 137 52.6
Gorai.006G157300 Gossypium raimondii HOM05D000375 ORTHO05D000240 1.3e-19 100.1 137 51.8
PGR004G0222 Punica granatum HOM05D000375 ORTHO05D000240 3.0e-19 99.0 123 52.8
AUR62033547 Chenopodium quinoa HOM05D000375 ORTHO05D000240 3.9e-19 98.6 128 56.2
SGA_v2.0_scaffold13G06773 Striga asiatica HOM05D000375 ORTHO05D000240 3.9e-19 98.6 122 50.0
AUR62043106 Chenopodium quinoa HOM05D000375 ORTHO05D000240 5.1e-19 98.2 133 52.6
SHI23940 Sapria himalayana HOM05D000375 ORTHO05D000240 5.1e-19 98.2 134 53.7
CiPaw.09G009800 Carya illinoinensis HOM05D000375 ORTHO05D000240 6.7e-19 97.8 135 51.1
Sed0026104 Sechium edule HOM05D000375 ORTHO05D000240 6.7e-19 97.8 132 49.2
SalBow5G1012 Salvia bowleyana HOM05D000375 ORTHO05D000240 8.7e-19 97.4 127 50.4
Lj1g0022211 Lotus japonicus HOM05D000375 ORTHO05D000240 1.9e-18 96.3 137 48.9
PGSC0003DMG400002679 Solanum tuberosum HOM05D000375 ORTHO05D000240 1.9e-18 96.3 141 52.5
SGA_v2.0_scaffold184G39943 Striga asiatica HOM05D000375 ORTHO05D000240 1.9e-18 96.3 140 47.9
ClCG10G019220 Citrullus lanatus HOM05D000375 ORTHO05D000240 2.5e-18 95.9 145 48.3
FvH4_6g18130 Fragaria vesca HOM05D000375 ORTHO05D000240 3.3e-18 95.5 138 48.6
Nitab4.5_0004686g0010 Nicotiana tabacum HOM05D000375 ORTHO05D000240 5.6e-18 94.7 129 51.9
FAN02G1892 Fragaria x ananassa HOM05D000375 ORTHO05D000240 9.6e-18 94.0 125 50.4
Glyma.19G192700 Glycine max HOM05D000375 ORTHO05D000240 1.3e-17 93.6 132 53.0
Hund04037 Selenicereus undatus HOM05D000375 ORTHO05D000240 1.3e-17 93.6 137 50.4
Nitab4.5_0000963g0060 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.6e-17 93.2 133 51.1
EL10Ac7g16969 Beta vulgaris HOM05D000375 ORTHO05D000240 2.8e-17 92.4 131 54.2
Cfa016559 Carpinus fangiana HOM05D000375 ORTHO05D000240 2.8e-17 92.4 131 51.1
Haze_19561 Corylus avellana HOM05D000375 ORTHO05D000240 2.8e-17 92.4 131 51.1
DCAR_013369 Daucus carota HOM05D000375 ORTHO05D000240 2.8e-17 92.4 127 49.6
CiPaw.10G006500 Carya illinoinensis HOM05D000375 ORTHO05D000240 3.6e-17 92.0 128 49.2
DCAR_009139 Daucus carota HOM05D000375 ORTHO05D000240 3.6e-17 92.0 126 52.4
MSTRG.26647 Avicennia marina HOM05D000375 ORTHO05D000240 4.8e-17 91.7 120 48.3
Hma1.2p1_0084F.1_g043380 Hydrangea macrophylla HOM05D000375 ORTHO05D000240 4.8e-17 91.7 133 54.9
Ca_08973_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 6.2e-17 91.3 137 50.4
TAR633G1342 Trochodendron aralioides HOM05D000375 ORTHO05D000240 6.2e-17 91.3 123 49.6
FAN09G3221 Fragaria x ananassa HOM05D000375 ORTHO05D000240 8.1e-17 90.9 138 46.4
MD14G1017600 Malus domestica HOM05D000375 ORTHO05D000240 8.1e-17 90.9 134 50.7
VMungo1383G3570 Vigna mungo HOM05D000375 ORTHO05D000240 8.1e-17 90.9 136 47.1
MD12G1020500 Malus domestica HOM05D000375 ORTHO05D000240 1.1e-16 90.5 134 50.7
Migut.L01765 Erythranthe guttata HOM05D000375 ORTHO05D000240 4.0e-16 88.6 133 49.6
Glyma.03G192200 Glycine max HOM05D000375 ORTHO05D000240 4.0e-16 88.6 131 51.9
FAN14G1098 Fragaria x ananassa HOM05D000375 ORTHO05D000240 6.9e-16 87.8 138 45.7
arahy.Tifrunner.gnm1.ann1.G4PR1G Arachis hypogaea HOM05D000375 ORTHO05D000240 1.5e-15 86.7 142 45.8
DCAR_020773 Daucus carota HOM05D000375 ORTHO05D000240 1.5e-15 86.7 118 49.2
MELO3C009444.2 Cucumis melo HOM05D000375 ORTHO05D000240 2.0e-15 86.3 156 41.7
CAN.G824.18 Capsicum annuum HOM05D000375 ORTHO05D000240 2.6e-15 85.9 123 51.2
THA.LOC104823461 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 2.6e-15 85.9 123 50.4
Ah.08g210830 Amaranthus hybridus HOM05D000375 ORTHO05D000240 3.4e-15 85.5 128 49.2
SalBow3G1415 Salvia bowleyana HOM05D000375 ORTHO05D000240 3.4e-15 85.5 121 51.2
Glyma.U031220 Glycine max HOM05D000375 ORTHO05D000240 5.8e-15 84.7 140 44.3
arahy.Tifrunner.gnm1.ann1.KV1X6M Arachis hypogaea HOM05D000375 ORTHO05D000240 7.6e-15 84.3 142 45.1
Hund19978 Selenicereus undatus HOM05D000375 ORTHO05D000240 7.6e-15 84.3 136 47.1
Cpa.g.sc5.63 Carica papaya HOM05D000375 ORTHO05D000240 1.3e-14 83.6 135 48.1
CsaV3_3G036970 Cucumis sativus L. HOM05D000375 ORTHO05D000240 1.3e-14 83.6 150 43.3
Lalb_Chr25g0288591 Lupinus albus HOM05D000375 ORTHO05D000240 1.7e-14 83.2 122 48.4
Sed0002035 Sechium edule HOM05D000375 ORTHO05D000240 3.8e-14 82.0 132 47.0
Medtr7g104050 Medicago truncatula HOM05D000375 ORTHO05D000240 1.1e-13 80.5 140 46.4
HPP92_011894 Vanilla planifolia HOM05D000375 ORTHO05D000240 1.1e-13 80.5 145 45.5
Phvul.001G187500 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 1.9e-13 79.7 136 44.9
Sc20g0006130 Simmondsia chinensis HOM05D000375 ORTHO05D000240 2.4e-13 79.3 129 48.1
Aqoxy4G02853 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 7.1e-13 77.8 143 45.5
A04p27910 Brassica napus HOM05D000375 ORTHO05D000240 7.1e-13 77.8 120 48.3
BraA04t18282Z Brassica rapa HOM05D000375 ORTHO05D000240 7.1e-13 77.8 120 48.3
Gorai.009G406500 Gossypium raimondii HOM05D000375 ORTHO05D000240 9.3e-13 77.4 104 48.1
BcaC02g07600 Brassica carinata HOM05D000375 ORTHO05D000240 1.6e-12 76.6 111 48.6
BolC4t28021H Brassica oleracea HOM05D000375 ORTHO05D000240 1.6e-12 76.6 111 48.6
Oeu032415.1 Olea europaea HOM05D000375 ORTHO05D000240 1.6e-12 76.6 104 49.0
unitig_8.g4145 Utricularia gibba HOM05D000375 ORTHO05D000240 2.1e-12 76.3 142 45.8
CDE02G4227 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 4.6e-12 75.1 121 47.1
COL.COLO4_29796 Corchorus olitorius HOM05D000375 ORTHO05D000240 4.6e-12 75.1 92 58.7
Glyma.10G067200 Glycine max HOM05D000375 ORTHO05D000240 4.6e-12 75.1 134 44.0
unitig_749.g14291 Utricularia gibba HOM05D000375 ORTHO05D000240 4.6e-12 75.1 94 54.3
BcaB06g28936 Brassica carinata HOM05D000375 ORTHO05D000240 7.9e-12 74.3 109 46.8
Potri.006G115200 Populus trichocarpa HOM05D000375 ORTHO05D000240 7.9e-12 74.3 107 46.7
Sabra06G0090100 Salix brachista HOM05D000375 ORTHO05D000240 2.3e-11 72.8 114 47.4
CANSAT51G0007 Cannabis sativa HOM05D000375 ORTHO05D000240 3.0e-11 72.4 152 38.8
Carub.0004s1820 Capsella rubella HOM05D000375 ORTHO05D000240 3.9e-11 72.0 124 46.8
Psat3g034600 Pisum sativum HOM05D000375 ORTHO05D000240 3.9e-11 72.0 141 43.3
AT2G36400 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 5.1e-11 71.6 131 43.5
Aa31LG10G8090 Aethionema arabicum HOM05D000375 ORTHO05D000240 1.1e-10 70.5 108 46.3
PSO384G2151 Papaver somniferum HOM05D000375 ORTHO05D000240 1.1e-10 70.5 132 43.9
BcaC01g05661 Brassica carinata HOM05D000375 ORTHO05D000240 1.5e-10 70.1 118 46.6
A03p20110 Brassica napus HOM05D000375 ORTHO05D000240 1.5e-10 70.1 118 46.6
C03p23540 Brassica napus HOM05D000375 ORTHO05D000240 1.5e-10 70.1 118 46.6
BraA03t11261Z Brassica rapa HOM05D000375 ORTHO05D000240 1.5e-10 70.1 118 46.6
PSO339G4506 Papaver somniferum HOM05D000375 ORTHO05D000240 1.9e-10 69.7 132 43.9
TPR.G19535 Trifolium pratense HOM05D000375 ORTHO05D000240 1.9e-10 69.7 145 42.8
VMungo0720G3052 Vigna mungo HOM05D000375 ORTHO05D000240 2.5e-10 69.3 134 41.0
BolC8t50429H Brassica oleracea HOM05D000375 ORTHO05D000240 4.3e-10 68.6 113 42.5
Sp4g18690 Schrenkiella parvula HOM05D000375 ORTHO05D000240 4.3e-10 68.6 121 44.6
BcaC08g44606 Brassica carinata HOM05D000375 ORTHO05D000240 2.1e-09 66.2 113 42.5
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 2.1e-09 66.2 113 42.5
BolC6t37262H Brassica oleracea HOM05D000375 ORTHO05D000240 2.1e-09 66.2 113 42.5
CARHR130700 Cardamine hirsuta HOM05D000375 ORTHO05D000240 2.1e-09 66.2 121 46.3
Thhalv10010453m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 2.1e-09 66.2 116 40.5
BcaC07g39654 Brassica carinata HOM05D000375 ORTHO05D000240 2.8e-09 65.9 117 41.9
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 2.8e-09 65.9 121 38.8
C08p28160 Brassica napus HOM05D000375 ORTHO05D000240 2.8e-09 65.9 117 41.9
BolC3t14750H Brassica oleracea HOM05D000375 ORTHO05D000240 2.8e-09 65.9 118 45.8
Nitab4.5_0000132g0060 Nicotiana tabacum HOM05D000375 ORTHO05D000240 3.7e-09 65.5 98 45.9
AL4G32560 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 4.8e-09 65.1 127 42.5
THA.LOC104805065 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 6.2e-09 64.7 123 39.8
BcaB01g00330 Brassica carinata HOM05D000375 ORTHO05D000240 8.2e-09 64.3 113 40.7
Sp5g09420 Schrenkiella parvula HOM05D000375 ORTHO05D000240 1.1e-08 63.9 113 39.8
BraA07t29817Z Brassica rapa HOM05D000375 ORTHO05D000240 1.4e-08 63.5 121 38.8
A09p45970 Brassica napus HOM05D000375 ORTHO05D000240 2.4e-08 62.8 113 40.7
BraA09t40058Z Brassica rapa HOM05D000375 ORTHO05D000240 2.4e-08 62.8 113 40.7
Thhalv10016778m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 2.4e-08 62.8 121 43.0
BcaB01g03841 Brassica carinata HOM05D000375 ORTHO05D000240 3.1e-08 62.4 117 44.4
CDE08G0533 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 1.2e-07 60.5 117 44.4
C04p11680 Brassica napus HOM05D000375 ORTHO05D000240 2.6e-07 59.3 128 43.0
BolC4t22817H Brassica oleracea HOM05D000375 ORTHO05D000240 2.6e-07 59.3 128 43.0
Carub.0005s1939 Capsella rubella HOM05D000375 ORTHO05D000240 2.6e-07 59.3 115 40.0
Phvul.007G222300 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 2.6e-07 59.3 132 39.4
Thhalv10022062m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 3.4e-07 58.9 121 41.3
AL5G33700 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 5.8e-07 58.2 115 39.1
BcaC02g11756 Brassica carinata HOM05D000375 ORTHO05D000240 5.8e-07 58.2 117 43.6
AT3G52910 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 7.6e-07 57.8 114 39.5
Aa31LG5G21580 Aethionema arabicum HOM05D000375 ORTHO05D000240 1.3e-06 57.0 59 49.2
unitig_26.g9247 Utricularia gibba HOM05D000375 ORTHO05D000240 2.2e-06 56.2 65 53.8
CARHR162790 Cardamine hirsuta HOM05D000375 ORTHO05D000240 2.9e-06 55.8 113 38.9
BcaB02g09355 Brassica carinata HOM05D000375 ORTHO05D000240 6.5e-06 54.7 133 40.6
Actinidia25635 Actinidia chinensis HOM05D000375 ORTHO05D000240 8.4e-06 54.3 72 47.2


User provided reference genes

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