Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0081751 Helianthus annuus HOM05D000608 ORTHO05D000444 7.1e-29 129.8 61 100.0
HanXRQChr07g0187041 Helianthus annuus HOM05D000608 ORTHO05D000444 2.3e-19 98.2 50 92.0
Ah.02g127730 Amaranthus hybridus HOM05D000608 ORTHO05D000444 1.5e-07 58.9 43 62.8
HanXRQChr08g0213451 Helianthus annuus HOM05D000608 ORTHO05D000444 1.5e-07 58.9 43 65.1
HanXRQChr14g0459141 Helianthus annuus HOM05D000608 ORTHO05D000444 1.5e-07 58.9 43 65.1
Lj2g0012251 Lotus japonicus HOM05D000608 ORTHO05D000444 1.5e-07 58.9 48 56.2
Medtr1g110070 Medicago truncatula HOM05D000608 ORTHO05D000444 2.0e-07 58.5 43 60.5
TPR.G4916 Trifolium pratense HOM05D000608 ORTHO05D000444 2.0e-07 58.5 43 60.5
Actinidia27595 Actinidia chinensis HOM05D000608 ORTHO05D000444 2.6e-07 58.2 44 61.4
Sc04g0006090 Simmondsia chinensis HOM05D000608 ORTHO05D000444 3.4e-07 57.8 43 62.8
Dinv31601 Davidia involucrata HOM05D000608 ORTHO05D000444 4.5e-07 57.4 43 60.5
Lsat_1_v5_gn_8_41320 Lactuca sativa HOM05D000608 ORTHO05D000444 4.5e-07 57.4 43 62.8
AUR62002823 Chenopodium quinoa HOM05D000608 ORTHO05D000444 5.9e-07 57.0 43 60.5
AUR62037286 Chenopodium quinoa HOM05D000608 ORTHO05D000444 5.9e-07 57.0 43 60.5
Haze_00647 Corylus avellana HOM05D000608 ORTHO05D000444 5.9e-07 57.0 43 60.5
CSS0000860 Camellia sinensis var. sinensis HOM05D000608 ORTHO05D000444 7.7e-07 56.6 42 61.9
Cc11_g09720 Coffea canephora HOM05D000608 ORTHO05D000444 7.7e-07 56.6 44 56.8
arahy.Tifrunner.gnm1.ann1.GYJH8K Arachis hypogaea HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 58.1
arahy.Tifrunner.gnm1.ann1.N5UVUF Arachis hypogaea HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 58.1
Ca_11129_v3 Cicer arietinum L. HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 58.1
ECA246G3814 Erigeron canadensis HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_0_13081 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_1_101101 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_2_20321 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_3_32361 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_3_61501 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_3_61660 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_7_45220 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_8_147341 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_8_162201 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Lsat_1_v5_gn_9_73681 Lactuca sativa HOM05D000608 ORTHO05D000444 1.0e-06 56.2 43 60.5
Manes.14G106400 Manihot esculenta HOM05D000608 ORTHO05D000444 1.0e-06 56.2 35 68.6
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 1.3e-06 55.8 43 60.5
CSS0009564 Camellia sinensis var. sinensis HOM05D000608 ORTHO05D000444 1.3e-06 55.8 44 59.1
CSS0030631 Camellia sinensis var. sinensis HOM05D000608 ORTHO05D000444 1.3e-06 55.8 52 51.9
ECA233G4691 Erigeron canadensis HOM05D000608 ORTHO05D000444 1.3e-06 55.8 43 60.5
Lj3A880T119 Lonicera japonica HOM05D000608 ORTHO05D000444 1.3e-06 55.8 35 68.6
Prupe.1G316100 Prunus persica HOM05D000608 ORTHO05D000444 1.7e-06 55.5 43 58.1
Actinidia14920 Actinidia chinensis HOM05D000608 ORTHO05D000444 2.2e-06 55.1 43 55.8
CSS0019198 Camellia sinensis var. sinensis HOM05D000608 ORTHO05D000444 2.2e-06 55.1 43 58.1
Ciclev10015520m.g Citrus clementina HOM05D000608 ORTHO05D000444 2.2e-06 55.1 43 58.1
Gohir.A01G127500 Gossypium hirsutum HOM05D000608 ORTHO05D000444 2.2e-06 55.1 35 68.6
Lj5g0004159 Lotus japonicus HOM05D000608 ORTHO05D000444 2.2e-06 55.1 43 58.1
Lalb_Chr10g0096431 Lupinus albus HOM05D000608 ORTHO05D000444 2.2e-06 55.1 43 58.1
Nitab4.5_0000116g0230 Nicotiana tabacum HOM05D000608 ORTHO05D000444 2.2e-06 55.1 52 51.9
Nitab4.5_0006422g0010 Nicotiana tabacum HOM05D000608 ORTHO05D000444 2.2e-06 55.1 52 51.9
Potri.008G124000 Populus trichocarpa HOM05D000608 ORTHO05D000444 2.2e-06 55.1 43 58.1
Hund25039 Selenicereus undatus HOM05D000608 ORTHO05D000444 2.2e-06 55.1 43 58.1
CARHR143790 Cardamine hirsuta HOM05D000608 ORTHO05D000444 2.9e-06 54.7 56 48.2
Cfa019738 Carpinus fangiana HOM05D000608 ORTHO05D000444 2.9e-06 54.7 35 62.9
Migut.L00986 Erythranthe guttata HOM05D000608 ORTHO05D000444 2.9e-06 54.7 45 57.8
FAN12G2096 Fragaria x ananassa HOM05D000608 ORTHO05D000444 2.9e-06 54.7 43 58.1
Lsat_1_v5_gn_7_103160 Lactuca sativa HOM05D000608 ORTHO05D000444 2.9e-06 54.7 43 58.1
QL01p010862 Quercus lobata HOM05D000608 ORTHO05D000444 2.9e-06 54.7 43 58.1
Hund20748 Selenicereus undatus HOM05D000608 ORTHO05D000444 2.9e-06 54.7 35 68.6
Atru.chr11.215 Acer truncatum HOM05D000608 ORTHO05D000444 3.8e-06 54.3 43 58.1
CSS0011183 Camellia sinensis var. sinensis HOM05D000608 ORTHO05D000444 3.8e-06 54.3 43 55.8
Dinv16125 Davidia involucrata HOM05D000608 ORTHO05D000444 3.8e-06 54.3 43 55.8
Migut.L01031 Erythranthe guttata HOM05D000608 ORTHO05D000444 3.8e-06 54.3 45 57.8
Oeu048364.1 Olea europaea HOM05D000608 ORTHO05D000444 3.8e-06 54.3 35 65.7
SGA_v2.0_scaffold38G14985 Striga asiatica HOM05D000608 ORTHO05D000444 3.8e-06 54.3 51 52.9
Cc01_g21180 Coffea canephora HOM05D000608 ORTHO05D000444 5.0e-06 53.9 44 56.8
Gohir.A12G051900 Gossypium hirsutum HOM05D000608 ORTHO05D000444 5.0e-06 53.9 35 65.7
Gohir.D01G114400 Gossypium hirsutum HOM05D000608 ORTHO05D000444 5.0e-06 53.9 35 65.7
Gorai.002G075400 Gossypium raimondii HOM05D000608 ORTHO05D000444 5.0e-06 53.9 35 65.7
Gorai.002G139400 Gossypium raimondii HOM05D000608 ORTHO05D000444 5.0e-06 53.9 35 65.7
Gorai.008G053400 Gossypium raimondii HOM05D000608 ORTHO05D000444 5.0e-06 53.9 35 65.7
Hma1.2p1_1024F.1_g249123 Hydrangea macrophylla HOM05D000608 ORTHO05D000444 5.0e-06 53.9 40 65.0
Lj2g0012715 Lotus japonicus HOM05D000608 ORTHO05D000444 5.0e-06 53.9 43 53.5
MBI19_g38159_MAGBIO Magnolia biondii HOM05D000608 ORTHO05D000444 5.0e-06 53.9 56 51.8
Oeu057747.1 Olea europaea HOM05D000608 ORTHO05D000444 5.0e-06 53.9 43 55.8
PSO170G1858 Papaver somniferum HOM05D000608 ORTHO05D000444 5.0e-06 53.9 40 65.0
PSO357G0445 Papaver somniferum HOM05D000608 ORTHO05D000444 5.0e-06 53.9 40 65.0
Rhsim01G0288200 Rhododendron simsii HOM05D000608 ORTHO05D000444 5.0e-06 53.9 54 51.9
Rhsim09G0104100 Rhododendron simsii HOM05D000608 ORTHO05D000444 5.0e-06 53.9 41 61.0
SalBow8G0663 Salvia bowleyana HOM05D000608 ORTHO05D007780 5.0e-06 53.9 43 58.1
SalBow8G2565 Salvia bowleyana HOM05D000608 ORTHO05D007780 5.0e-06 53.9 43 58.1
Thecc.02G223100 Theobroma cacao HOM05D000608 ORTHO05D000444 5.0e-06 53.9 35 65.7
TWI31G1419 Tripterygium wilfordii HOM05D000608 ORTHO05D000444 5.0e-06 53.9 35 65.7
vmacro01398 Vaccinium macrocarpon HOM05D000608 ORTHO05D000444 5.0e-06 53.9 43 53.5
Aqoxy2G02852 Aquilegia oxysepala HOM05D000608 ORTHO05D000444 6.5e-06 53.5 40 65.0
AL5G10210 Arabidopsis lyrata HOM05D000608 ORTHO05D000444 6.5e-06 53.5 43 58.1
BolC2t11015H Brassica oleracea HOM05D000608 ORTHO05D000444 6.5e-06 53.5 59 44.1
Carub.0005s0024 Capsella rubella HOM05D000608 ORTHO05D000444 6.5e-06 53.5 43 58.1
Thhalv10000918m.g Eutrema salsugineum HOM05D000608 ORTHO05D000444 6.5e-06 53.5 56 48.2
FvH4_4g26790 Fragaria vesca HOM05D000608 ORTHO05D000444 6.5e-06 53.5 43 55.8
FAN07G1341 Fragaria x ananassa HOM05D000608 ORTHO05D000444 6.5e-06 53.5 43 55.8
FAN12G2817 Fragaria x ananassa HOM05D000608 ORTHO05D000444 6.5e-06 53.5 43 55.8
FAN17G2764 Fragaria x ananassa HOM05D000608 ORTHO05D000444 6.5e-06 53.5 43 55.8
FAN22G0024 Fragaria x ananassa HOM05D000608 ORTHO05D000444 6.5e-06 53.5 43 55.8
Potri.010G120700 Populus trichocarpa HOM05D000608 ORTHO05D000444 6.5e-06 53.5 44 54.5
RcHm_v2.0_Chr4g0434471 Rosa chinensis HOM05D000608 ORTHO05D000444 6.5e-06 53.5 43 55.8
Thecc.01G307200 Theobroma cacao HOM05D000608 ORTHO05D000444 6.5e-06 53.5 57 49.1
EL10Ac6g14319 Beta vulgaris HOM05D000608 ORTHO05D000444 8.5e-06 53.1 43 55.8
Cfa015844 Carpinus fangiana HOM05D000608 ORTHO05D000444 8.5e-06 53.1 43 55.8
CDE08G0882 Ceratophyllum demersum HOM05D000608 ORTHO05D003052 8.5e-06 53.1 52 51.9
DCAR_007261 Daucus carota HOM05D000608 ORTHO05D000444 8.5e-06 53.1 35 65.7
DCAR_030177 Daucus carota HOM05D000608 ORTHO05D000444 8.5e-06 53.1 35 65.7
Gohir.A09G236100 Gossypium hirsutum HOM05D000608 ORTHO05D000444 8.5e-06 53.1 58 44.8
Os01g0306900 Oryza sativa ssp. japonica HOM05D000608 ORTHO05D000444 8.5e-06 53.1 40 65.0
Sabra10G0090800 Salix brachista HOM05D000608 ORTHO05D000444 8.5e-06 53.1 52 50.0
TAR362G1262 Trochodendron aralioides HOM05D000608 ORTHO05D000444 8.5e-06 53.1 40 62.5
TAR374G1180 Trochodendron aralioides HOM05D000608 ORTHO05D000444 8.5e-06 53.1 45 51.1


User provided reference genes

Program Settings