Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 8.4e-132 473.8 254 100.0
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 2.5e-59 233.0 317 49.2
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 1.4e-57 227.3 312 50.3
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 8.9e-57 224.6 318 50.0
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 3.4e-56 222.6 324 48.1
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 3.7e-55 219.2 317 48.6
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 6.4e-55 218.4 298 51.7
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.1e-54 217.6 285 52.3
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 3.9e-52 209.1 309 46.6
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 1.9e-51 206.8 287 50.9
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 5.6e-51 205.3 304 45.1
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 4.7e-50 202.2 317 46.4
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 6.2e-50 201.8 309 46.0
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.4e-49 200.7 313 47.3
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 5.2e-49 198.7 316 45.3
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 6.8e-49 198.4 310 45.2
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 6.8e-49 198.4 315 44.4
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 1.2e-48 197.6 309 46.0
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 1.5e-48 197.2 309 45.6
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 4.4e-48 195.7 304 44.1
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 2.9e-47 193.0 323 45.2
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 3.7e-47 192.6 312 46.2
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 1.1e-46 191.0 286 47.6
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 3.2e-46 189.5 313 42.8
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 4.1e-46 189.1 320 45.0
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 5.4e-46 188.7 313 43.1
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 9.2e-46 188.0 324 41.7
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 1.2e-45 187.6 334 44.6
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 1.6e-45 187.2 315 43.5
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 4.6e-45 185.7 300 47.0
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 1.5e-43 180.6 288 46.9
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 1.9e-43 180.3 308 43.5
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 4.3e-43 179.1 312 43.9
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 5.6e-43 178.7 315 42.9
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 1.6e-42 177.2 316 40.8
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 2.1e-42 176.8 316 42.4
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 3.6e-42 176.0 316 42.7
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 6.2e-42 175.3 311 45.3
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 1.1e-41 174.5 311 40.8
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 1.4e-41 174.1 316 41.8
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 1.4e-41 174.1 345 40.9
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 3.1e-41 172.9 317 42.3
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 3.1e-41 172.9 324 42.6
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 8.9e-41 171.4 316 42.1
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 2.0e-40 170.2 311 43.1
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 3.4e-40 169.5 319 41.1
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 9.8e-40 167.9 315 41.9
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 1.3e-39 167.5 317 41.6
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 1.3e-39 167.5 317 42.0
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 1.1e-38 164.5 317 41.6
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 1.4e-38 164.1 252 45.2
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 5.4e-38 162.2 408 36.5
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 5.4e-38 162.2 317 41.3
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 7.8e-37 158.3 317 41.0
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 1.0e-36 157.9 310 42.3
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 1.0e-36 157.9 317 40.1
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 1.0e-36 157.9 317 40.1
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 1.9e-35 153.7 320 41.6
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 3.3e-35 152.9 361 37.4
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 9.5e-35 151.4 385 35.6
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 4.7e-34 149.1 377 35.5
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 6.2e-34 148.7 377 35.5
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 1.1e-33 147.9 283 43.8
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 1.8e-33 147.1 310 39.7
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 3.1e-33 146.4 320 39.1
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 6.8e-33 145.2 310 39.7
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 8.9e-33 144.8 267 42.3
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 1.2e-32 144.4 318 37.7
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 1.5e-32 144.1 313 39.6
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 5.8e-32 142.1 314 39.5
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 9.9e-32 141.4 247 44.1
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 1.4e-30 137.5 304 37.2
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 1.0e-28 131.3 304 36.2
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 1.3e-28 131.0 302 36.8
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 2.3e-28 130.2 312 39.7
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 3.0e-28 129.8 317 37.5
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 3.0e-28 129.8 317 37.5
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 8.6e-28 128.3 320 37.8
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 4.0e-25 119.4 225 42.2
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 6.2e-18 95.5 228 39.5
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 9.0e-17 91.7 118 54.2
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 5.8e-16 89.0 198 39.9
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 6.4e-15 85.5 227 36.6
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 1.9e-14 84.0 58 75.9
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 3.2e-14 83.2 68 66.2
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 2.7e-13 80.1 163 38.7
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 1.9e-11 73.9 89 56.2
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 5.6e-11 72.4 57 73.7
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 5.8e-08 62.4 43 76.7
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 5.8e-08 62.4 43 76.7
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 4.2e-06 56.2 99 45.5


User provided reference genes

Program Settings