Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 1.2e-247 859.4 438 100.0
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.0e-201 706.8 431 83.8
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 3.0e-193 678.7 436 80.7
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 1.9e-192 676.0 449 78.4
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 2.4e-171 605.9 435 73.8
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 2.5e-168 595.9 402 76.1
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 4.0e-166 588.6 413 74.1
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 3.9e-161 572.0 397 75.6
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 7.4e-160 567.8 406 74.9
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 3.7e-159 565.5 397 74.3
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 5.8e-157 558.1 406 71.7
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 7.6e-157 557.8 407 71.3
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 3.8e-156 555.4 450 67.8
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 1.9e-155 553.1 406 71.2
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 1.9e-155 553.1 421 69.6
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.5e-155 552.7 418 69.9
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 2.5e-155 552.7 439 67.2
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.5e-154 548.9 421 69.4
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.8e-153 546.6 400 72.0
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.3e-153 546.2 396 73.5
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 5.1e-153 545.0 403 72.0
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 5.1e-153 545.0 437 66.6
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.9e-152 543.1 423 67.8
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 1.9e-152 543.1 419 69.7
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 1.9e-152 543.1 413 70.9
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 4.3e-152 542.0 423 67.8
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 7.4e-152 541.2 409 68.9
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 1.3e-151 540.4 357 77.6
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.6e-151 540.0 402 70.6
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.4e-150 537.0 419 70.2
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 1.4e-150 537.0 373 75.6
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 2.4e-150 536.2 416 70.2
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 3.1e-150 535.8 422 68.0
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 4.0e-150 535.4 374 74.9
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 6.9e-150 534.6 397 70.3
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.5e-149 533.5 390 71.0
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 3.4e-149 532.3 403 69.5
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 5.8e-149 531.6 418 67.0
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 5.8e-149 531.6 374 74.3
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 7.6e-149 531.2 369 75.9
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 2.2e-148 529.6 395 72.2
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 8.4e-148 527.7 371 73.6
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 1.1e-147 527.3 411 68.4
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 1.9e-147 526.6 422 66.8
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 1.9e-147 526.6 384 71.1
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.5e-147 526.2 454 63.9
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 3.2e-147 525.8 387 71.3
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 5.5e-147 525.0 427 66.7
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 1.2e-146 523.9 414 68.4
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 1.2e-146 523.9 411 69.6
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.1e-146 523.1 411 68.1
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 2.1e-146 523.1 375 72.5
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 7.9e-146 521.2 411 67.6
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.3e-145 520.4 390 69.7
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 2.3e-145 519.6 404 67.6
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.9e-145 518.8 414 67.9
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 2.5e-144 516.2 440 64.3
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 3.3e-144 515.8 415 66.0
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 4.3e-144 515.4 419 65.6
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 1.6e-143 513.5 379 71.8
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 2.8e-143 512.7 375 72.3
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 3.1e-142 509.2 374 71.1
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 6.9e-142 508.1 414 67.1
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 3.4e-141 505.8 374 70.9
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 2.9e-140 502.7 371 72.0
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.1e-139 500.7 422 63.7
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 1.1e-139 500.7 362 71.8
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 7.9e-138 494.6 414 66.7
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 2.5e-136 489.6 346 74.6
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 2.5e-136 489.6 401 63.8
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 4.3e-136 488.8 376 69.9
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.1e-134 482.3 331 76.1
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 6.9e-134 481.5 331 75.8
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 5.0e-132 475.3 371 68.7
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 6.5e-132 474.9 372 69.6
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 6.5e-132 474.9 466 58.2
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 3.2e-131 472.6 371 68.2
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 1.3e-127 460.7 375 65.3
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 1.5e-125 453.8 362 64.4
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 2.2e-124 449.9 362 64.1
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 2.2e-124 449.9 366 66.1
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.9e-124 449.5 414 60.4
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 8.0e-122 441.4 369 64.5
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 1.0e-121 441.0 362 63.3
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 2.3e-121 439.9 365 64.4
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 8.8e-121 438.0 371 61.2
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 2.0e-117 426.8 383 60.6
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 6.1e-114 415.2 409 57.7
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 8.8e-113 411.4 326 66.9
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 5.7e-112 408.7 420 55.2
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 9.7e-112 407.9 370 60.3
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 4.8e-111 405.6 326 66.6
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 2.4e-110 403.3 429 54.8
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 2.4e-110 403.3 371 60.1
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 2.4e-110 403.3 371 60.1
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 9.1e-110 401.4 379 59.1
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 3.5e-109 399.4 398 56.3
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 2.0e-104 383.6 312 66.7
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 9.8e-104 381.3 382 56.5
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 9.8e-104 381.3 382 56.5
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 5.9e-101 372.1 368 56.0
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 3.8e-100 369.4 364 56.9
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 3.8e-100 369.4 364 56.9
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 8.0e-98 361.7 392 52.8
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 1.8e-97 360.5 368 58.2
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.4e-78 297.0 227 70.0
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 8.6e-76 288.5 280 61.1
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 5.8e-72 275.8 279 55.2
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 5.6e-67 259.2 155 84.5
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 1.6e-61 241.1 362 38.4
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 1.3e-55 221.5 377 39.0
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 3.3e-51 206.8 387 36.2
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 4.3e-51 206.5 139 77.0
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 9.3e-46 188.7 126 77.8
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 2.1e-45 187.6 125 77.6
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.2e-40 171.8 115 76.5
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 7.6e-40 169.1 408 33.3
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.0e-39 168.7 402 35.8
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 8.4e-39 165.6 261 43.3
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 1.3e-36 158.3 152 58.6
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 2.3e-28 131.0 120 57.5
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 6.3e-26 122.9 197 39.6
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 3.4e-24 117.1 78 76.9
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 2.5e-22 110.9 98 62.2
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 1.6e-21 108.2 305 30.8
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 4.6e-21 106.7 81 66.7
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 3.7e-10 70.5 399 24.8
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.1e-09 68.9 48 68.8
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 4.1e-09 67.0 269 25.7
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 5.3e-09 66.6 268 23.9
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 5.3e-09 66.6 235 27.2
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 3.5e-08 63.9 351 24.8
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 5.9e-08 63.2 378 23.8
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 3.8e-07 60.5 283 26.1
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 5.0e-07 60.1 296 23.6
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 6.5e-07 59.7 276 25.4
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 8.5e-07 59.3 278 24.5
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 1.5e-06 58.5 343 23.9
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 1.5e-06 58.5 339 26.3
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 2.5e-06 57.8 281 24.2
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 4.2e-06 57.0 362 26.0
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 7.2e-06 56.2 344 24.4
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 7.2e-06 56.2 237 27.0
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 9.4e-06 55.8 377 23.1
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 9.4e-06 55.8 336 23.8
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 9.4e-06 55.8 364 24.5
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 9.4e-06 55.8 339 25.4


User provided reference genes

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