Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.8e-78 295.8 144 100.0
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 2.0e-77 292.4 144 98.6
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.1e-75 286.6 144 96.5
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.1
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.5e-72 276.2 139 93.5
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 91.0
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 4.2e-72 274.6 143 90.9
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 91.7
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 91.0
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 91.7
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.0
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.0
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.0
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.0
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.0
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.6e-71 272.7 136 94.9
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 2.1e-71 272.3 144 91.0
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 2.1e-71 272.3 144 91.0
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 2.1e-71 272.3 144 89.6
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 2.1e-71 272.3 144 90.3
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 2.7e-71 271.9 144 90.3
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 2.7e-71 271.9 144 90.3
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 2.7e-71 271.9 144 90.3
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 3.6e-71 271.6 141 91.5
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 88.9
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 89.6
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 91.0
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 88.9
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 88.9
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 4.7e-71 271.2 144 89.6
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 4.7e-71 271.2 144 89.6
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 4.7e-71 271.2 144 90.3
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 89.6
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 6.1e-71 270.8 136 94.9
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 88.9
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 6.1e-71 270.8 139 91.4
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 8.0e-71 270.4 144 88.9
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 88.2
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 88.2
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 88.9
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.4e-70 269.6 144 89.6
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 1.4e-70 269.6 144 88.9
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.8e-70 269.2 144 88.9
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.3e-70 268.9 144 89.6
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.3e-70 268.9 144 87.5
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 2.3e-70 268.9 143 90.2
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 3.0e-70 268.5 136 94.1
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 3.0e-70 268.5 144 89.6
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 3.0e-70 268.5 144 88.9
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 4.0e-70 268.1 139 91.4
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 4.0e-70 268.1 139 91.4
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 4.0e-70 268.1 139 91.4
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 4.0e-70 268.1 139 91.4
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 5.2e-70 267.7 144 87.5
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 5.2e-70 267.7 144 89.6
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 5.2e-70 267.7 144 88.2
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 6.8e-70 267.3 136 92.6
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 6.8e-70 267.3 136 92.6
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 6.8e-70 267.3 136 92.6
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 6.8e-70 267.3 144 88.9
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 8.8e-70 266.9 144 87.5
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 1.2e-69 266.5 144 88.2
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 2.6e-69 265.4 136 92.6
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 2.6e-69 265.4 136 92.6
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 3.4e-69 265.0 142 88.7
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 3.4e-69 265.0 136 91.9
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 4.4e-69 264.6 144 88.2
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 7.5e-69 263.8 136 91.9
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 9.8e-69 263.5 136 91.2
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 2.2e-68 262.3 136 91.9
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 2.8e-68 261.9 130 94.6
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 1.1e-67 260.0 136 90.4
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 1.8e-67 259.2 142 86.6
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 2.4e-67 258.8 136 89.7
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 5.4e-67 257.7 141 87.2
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 5.4e-67 257.7 140 85.7
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 85.7
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 2.0e-66 255.8 136 89.0
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 2.7e-66 255.4 136 86.8
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 3.5e-66 255.0 144 81.9
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.9e-66 254.2 140 84.3
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 85.0
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 85.0
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.3e-65 253.1 136 87.5
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.3e-65 253.1 170 74.7
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.7e-65 252.7 154 81.8
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 1.7e-65 252.7 142 82.4
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.3e-65 252.3 136 86.0
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 2.9e-65 251.9 136 86.8
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 2.9e-65 251.9 136 86.0
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 2.9e-65 251.9 136 86.0
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 83.6
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 83.6
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 5.0e-65 251.1 135 87.4
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 6.5e-65 250.8 136 86.0
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 6.5e-65 250.8 159 77.4
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.9e-64 249.2 136 86.0
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.2e-64 248.1 140 84.3
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.2e-63 246.5 135 83.7
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.0e-62 243.4 136 83.8
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.8e-62 242.7 136 83.1
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 4.0e-62 241.5 208 62.5
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 5.2e-62 241.1 136 83.8
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 5.2e-62 241.1 136 83.8
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 5.2e-62 241.1 136 83.8
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 5.2e-62 241.1 136 83.8
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 1.5e-61 239.6 197 64.0
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.7e-61 237.7 164 72.0
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 2.8e-60 235.3 136 79.4
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 1.2e-58 229.9 126 84.9
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.2e-58 229.9 148 76.4
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 7.8e-58 227.3 139 79.9
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.9e-57 225.3 139 71.9
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 3.3e-56 221.9 136 77.9
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.2e-53 213.4 136 70.6
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.8e-51 206.1 119 81.5
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 7.0e-51 204.1 160 65.6
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 3.0e-49 198.7 110 84.5
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 6.6e-49 197.6 118 83.1
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 8.6e-49 197.2 99 93.9
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 1.5e-48 196.4 136 62.5
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.2e-47 193.4 131 64.1
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 4.7e-47 191.4 97 92.8
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 3.9e-41 171.8 112 75.9
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 4.4e-29 131.7 74 86.5
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 4.9e-28 128.3 136 47.8
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.9e-27 126.3 74 82.4
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.6e-26 123.2 74 79.7
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 2.7e-26 122.5 140 50.0
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 1.7e-25 119.8 74 75.7
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 3.0e-17 92.4 43 97.7
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 1.7e-12 76.6 160 33.1
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 3.8e-12 75.5 154 32.5
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 8.4e-12 74.3 117 36.8
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 1.1e-11 73.9 53 64.2
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 5.4e-11 71.6 44 79.5
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 8.1e-07 57.8 33 72.7
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.1e-06 57.4 133 29.3
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 9.0e-06 54.3 83 37.3


User provided reference genes

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