Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 2481.4 1286 100.0
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1902.5 1295 76.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1777.7 1331 72.2
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1484.5 1356 58.3
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1455.3 1348 57.9
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1453.3 1332 59.2
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1444.1 1382 57.2
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1433.7 1352 56.4
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1432.2 1349 57.2
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1431.4 1333 58.9
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1429.8 1332 58.8
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1429.1 1415 55.8
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1424.5 1352 56.1
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1420.2 1352 56.1
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1416.7 1352 56.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1416.0 1352 56.0
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1414.4 1316 57.8
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1395.2 1355 56.1
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1394.4 1309 58.5
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1391.3 1352 56.4
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1386.7 1354 57.2
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1383.6 1353 56.4
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1380.9 1391 55.5
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1380.2 1356 56.0
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1365.9 1364 54.6
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1360.9 1346 54.6
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1352.8 1374 53.9
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1352.0 1340 55.4
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1349.0 1309 55.6
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1345.1 1356 55.0
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1344.7 1338 55.4
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1340.5 1379 53.2
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1340.1 1346 54.5
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1328.5 1344 54.2
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1323.1 1367 53.9
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1322.0 1337 54.5
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1320.1 1312 54.4
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1316.6 1317 53.8
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1315.8 1315 54.3
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1315.8 1363 52.6
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1313.9 1320 53.6
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1313.1 1448 51.5
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1312.0 1352 53.8
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1309.3 1373 53.2
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1308.1 1333 54.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1305.8 1359 52.8
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1304.7 1354 53.0
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1303.1 1301 54.0
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1297.7 1423 51.2
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1297.7 1372 52.8
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1296.2 1337 53.9
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1292.3 1329 52.2
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1290.0 1353 51.9
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1288.1 1390 52.3
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1287.3 1198 57.6
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1284.2 1306 54.3
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1283.1 1306 54.1
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1281.2 1369 51.1
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1280.8 1372 52.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1279.2 1308 54.2
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1278.8 1331 53.9
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1278.1 1304 53.8
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1277.3 1353 53.3
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1267.7 1343 52.4
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1266.1 1305 53.4
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1253.4 1359 51.0
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1247.6 1353 51.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1246.5 1359 52.3
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1215.3 1340 50.1
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1214.5 1532 47.2
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1208.0 1322 51.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1206.8 1336 51.0
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1179.1 1343 49.8
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1176.4 1098 58.4
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1158.3 1328 49.7
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1150.2 1372 46.8
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1135.2 1576 44.9
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1078.5 1080 54.9
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.9e-309 1066.2 1342 44.5
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 2.4e-291 1006.1 1004 53.8
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 3.0e-278 962.6 984 54.8
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.2e-276 956.4 1025 53.5
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.8e-270 936.8 1008 53.8
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 6.3e-268 928.3 1302 42.4
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 8.0e-263 911.4 1150 45.6
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.9e-236 823.2 793 54.9
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.8e-230 803.9 830 54.3
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 8.9e-222 775.0 713 56.4
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 2.7e-218 763.5 801 53.2
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.3e-217 761.1 706 56.4
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 5.3e-190 669.5 1291 35.4
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 6.2e-183 646.0 1374 33.2
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.0e-156 558.9 1403 30.9
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.7e-156 558.1 511 56.4
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.0e-148 532.3 619 51.4
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 9.7e-144 515.8 433 61.2
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.6e-141 508.4 521 54.3
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 4.2e-139 500.4 434 60.4
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 2.2e-135 488.0 517 53.2
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.0e-125 454.9 664 38.9
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 6.1e-122 443.4 329 66.0
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 3.7e-119 434.1 389 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 8.0e-114 416.4 993 32.8
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 9.0e-89 333.2 712 36.4
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.2e-86 324.7 264 61.7
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 2.1e-85 322.0 542 41.0
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.7e-85 321.6 470 37.9
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 2.4e-73 282.0 364 49.2
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.1e-73 281.6 468 39.5
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 9.6e-67 260.0 361 41.8
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.9e-60 238.0 442 37.1
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 9.7e-59 233.4 256 53.1
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.4e-57 229.6 161 68.3
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 2.5e-54 218.8 141 78.0
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 9.4e-54 216.9 138 76.1
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 2.4e-49 202.2 387 39.8
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-48 199.5 231 48.1
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 7.7e-48 197.2 137 69.3
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 2.9e-47 195.3 248 43.1
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 3.8e-47 194.9 1151 23.6
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.4e-46 193.0 354 37.9
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 8.2e-42 177.2 259 40.2
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.8e-41 176.0 190 52.1
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 3.8e-39 168.3 172 53.5
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 3.8e-39 168.3 137 60.6
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 9.4e-38 163.7 218 44.5
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 4.0e-36 158.3 167 52.1
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 7.5e-35 154.1 686 24.5
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 4.5e-32 144.8 137 55.5
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 3.7e-26 125.2 425 28.2
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 2.7e-24 119.0 1215 21.6
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.0e-23 117.1 97 60.8
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.3e-23 116.7 136 50.7
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.1e-22 113.6 77 68.8
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.2e-22 112.1 263 34.2
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 6.1e-21 107.8 170 44.1
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.6e-19 102.4 197 37.1
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.7e-18 99.8 150 41.3
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 7.0e-17 94.4 99 46.5
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.6e-16 93.2 87 56.3
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 2.0e-16 92.8 65 70.8
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.5e-16 92.0 123 48.8
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 1.0e-15 90.5 582 22.9
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.6e-15 87.8 114 43.0
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.1e-14 87.0 94 48.9
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 4.3e-14 85.1 95 45.3
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 4.7e-13 81.6 95 49.5
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 8.9e-12 77.4 57 59.6
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 2.6e-11 75.9 134 38.8
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.7e-10 73.2 136 41.2
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 1.7e-10 73.2 73 50.7
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.9e-10 72.4 136 41.2
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 6.4e-10 71.2 63 58.7
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.3e-10 70.9 122 37.7
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 8.3e-10 70.9 108 38.9
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 5.4e-09 68.2 101 40.6
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.2e-08 67.0 214 31.8
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 1.6e-08 66.6 61 60.7
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 1.6e-08 66.6 50 58.0
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 2.0e-08 66.2 57 63.2
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 8.6e-07 60.8 106 43.4
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 1.1e-06 60.5 95 40.0
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.9e-06 59.7 106 42.5


User provided reference genes

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