Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 3670.6 1850 100.0
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2830.0 1916 76.4
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2653.6 1872 74.5
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2242.2 1947 61.9
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2229.9 1895 62.5
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2152.1 1872 60.6
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2127.8 1962 58.7
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2123.2 1950 59.5
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2092.0 2035 57.3
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2082.4 1953 57.6
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2067.4 1973 57.0
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2057.7 1979 57.0
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2051.6 1922 58.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2044.2 1996 56.5
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2036.2 1897 57.6
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2033.5 1997 55.9
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2026.5 1950 56.5
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2021.5 2096 54.5
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2021.1 1911 57.0
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2020.7 1985 55.6
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2016.5 1964 56.2
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2008.4 1969 55.9
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2004.2 1925 56.5
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2002.6 1981 55.1
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 1999.2 1957 55.6
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1990.7 2061 53.8
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1983.8 2015 54.7
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 1981.8 1952 55.3
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1968.0 1898 56.3
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1963.0 1969 55.5
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1961.4 1923 56.0
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1959.9 1908 56.4
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1958.0 1943 54.8
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1954.9 1914 55.3
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1953.3 1933 54.9
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1946.8 1929 55.1
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1946.8 1940 54.6
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1941.8 1976 53.7
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1941.8 1948 54.8
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1941.4 1891 55.6
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1937.9 1949 54.6
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1937.2 1933 54.3
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1929.1 1953 53.7
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1926.4 1970 54.0
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1922.1 1929 54.8
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1921.4 1937 54.2
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1919.4 1963 53.3
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1917.5 2033 53.4
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1917.1 2034 52.9
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1916.0 1969 53.8
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1913.3 1857 57.0
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1911.7 1956 53.3
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1909.8 1929 53.8
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1907.9 1978 53.2
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1906.0 1892 54.9
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1890.2 1961 53.6
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1885.2 1886 55.3
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1883.2 2010 53.1
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1854.7 1956 51.9
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1841.6 2054 51.1
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1839.3 2018 51.1
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1830.1 2093 50.2
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1823.1 1935 53.1
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1807.3 1973 51.9
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1793.9 1916 52.8
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1789.6 1849 53.3
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1787.7 1855 53.2
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1786.5 1857 53.1
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1782.7 1886 52.5
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1778.5 1852 52.6
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1776.5 1854 53.1
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1773.8 1845 52.9
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1769.6 1764 54.9
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1762.3 1855 52.8
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1755.0 1856 52.5
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1743.8 1879 52.3
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1735.3 1883 51.6
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1724.9 1847 53.3
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1718.0 1868 51.8
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1716.0 1850 51.5
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1711.8 1860 50.8
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1591.6 2132 44.3
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1571.6 1523 56.9
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1463.7 1889 46.2
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1417.1 1716 47.6
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1410.6 1548 50.1
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1296.2 1323 54.6
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1276.5 1164 60.0
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1149.8 2151 36.5
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1145.6 1822 39.7
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1089.3 2151 34.6
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 1.4e-297 1027.3 2057 35.1
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 5.0e-274 949.1 692 70.5
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 2.3e-234 817.4 1281 41.8
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 3.7e-229 800.0 776 56.4
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.3e-217 760.0 678 61.2
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.2e-216 758.4 674 58.2
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.3e-210 738.4 2071 29.4
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 5.1e-202 709.9 1155 38.4
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 2.7e-179 634.4 745 48.5
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.8e-162 578.6 697 47.5
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.5e-161 575.5 761 46.4
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 7.5e-137 493.4 460 57.4
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 1.1e-132 479.6 359 67.4
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 4.6e-78 298.1 191 77.0
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.9e-76 292.7 249 62.2
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 2.4e-63 249.2 220 57.3
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 8.7e-61 240.7 255 52.2
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.5e-60 240.0 218 56.4
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 8.4e-56 224.2 298 38.9
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 9.6e-52 210.7 124 82.3
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.4e-50 206.8 474 34.8
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 5.0e-32 145.2 193 43.5
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 3.3e-28 132.5 238 40.8
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 4.4e-28 132.1 153 47.1
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 7.4e-28 131.3 80 83.8
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.0e-26 124.8 153 44.4
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 1.2e-17 97.4 87 57.5
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 3.8e-16 92.4 119 39.5
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 5.0e-16 92.0 68 61.8
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 8.5e-16 91.3 303 25.7
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 9.4e-15 87.8 61 67.2
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 8.8e-13 81.3 94 47.9
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 7.5e-12 78.2 74 58.1
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 3.1e-10 72.8 66 47.0
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 7.7e-09 68.2 284 28.2


User provided reference genes

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