Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 3.4e-49 198.0 98 100.0
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 5.1e-29 131.0 72 86.1
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 6.1e-22 107.5 70 74.3
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.8e-21 105.9 60 83.3
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.8e-18 95.9 61 67.2
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 7.0e-18 94.0 61 65.6
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.6e-17 92.8 60 70.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.0e-17 92.4 60 68.3
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.5e-17 91.7 60 66.7
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.9e-17 90.9 60 68.3
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 5.9e-17 90.9 61 63.9
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 5.9e-17 90.9 61 65.6
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 7.7e-17 90.5 60 65.0
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.0e-16 90.1 57 71.9
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 2.2e-16 89.0 60 66.7
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 8.5e-16 87.0 61 62.3
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 1.1e-15 86.7 66 56.1
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.5e-15 86.3 60 63.3
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.5e-15 86.3 58 63.8
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.5e-15 86.3 72 56.9
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.5e-15 86.3 60 60.0
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.5e-15 85.5 60 63.3
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 4.2e-15 84.7 61 60.7
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 4.2e-15 84.7 60 61.7
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 5.5e-15 84.3 60 60.0
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.2e-14 83.2 60 56.7
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 1.6e-14 82.8 60 61.7
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 2.1e-14 82.4 60 56.7
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.7e-14 82.0 60 61.7
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 2.7e-14 82.0 60 63.3
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 3.6e-14 81.6 60 56.7
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.6e-14 81.6 66 54.5
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 3.6e-14 81.6 61 60.7
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 4.7e-14 81.3 61 55.7
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 6.1e-14 80.9 61 55.7
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 6.1e-14 80.9 72 48.6
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 6.1e-14 80.9 72 48.6
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 6.1e-14 80.9 60 55.0
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 8.0e-14 80.5 60 56.7
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 8.0e-14 80.5 60 56.7
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 8.0e-14 80.5 60 56.7
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 8.0e-14 80.5 60 56.7
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 8.0e-14 80.5 60 56.7
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 8.0e-14 80.5 60 56.7
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 8.0e-14 80.5 60 56.7
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 8.0e-14 80.5 60 56.7
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 1.4e-13 79.7 61 59.0
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 1.8e-13 79.3 61 54.1
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 2.3e-13 79.0 60 55.0
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 3.0e-13 78.6 60 61.7
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 5.2e-13 77.8 61 55.7
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 6.8e-13 77.4 61 54.1
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 6.8e-13 77.4 61 54.1
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 6.8e-13 77.4 61 54.1
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 8.8e-13 77.0 60 55.0
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 8.8e-13 77.0 60 55.0
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 8.8e-13 77.0 60 53.3
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 1.2e-12 76.6 61 57.4
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.5e-12 76.3 60 53.3
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 2.6e-12 75.5 57 56.1
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 4.4e-12 74.7 61 54.1
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 1.7e-11 72.8 61 54.1
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.8e-11 72.0 59 52.5
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 3.7e-11 71.6 51 60.8
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 6.3e-11 70.9 61 54.1
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 3.1e-10 68.6 60 50.0
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 4.1e-10 68.2 47 63.8
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.6e-09 66.2 53 52.8
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.0e-09 65.9 58 51.7
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 2.7e-09 65.5 50 56.0
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.0e-08 63.5 60 46.7
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 1.0e-08 63.5 61 47.5
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.3e-08 63.2 57 52.6
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.3e-08 63.2 53 49.1
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.7e-08 62.8 55 47.3
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.2e-08 62.4 53 49.1
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 2.2e-08 62.4 56 51.8
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 2.9e-08 62.0 56 46.4
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 5.0e-08 61.2 53 52.8
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 1.1e-07 60.1 55 43.6
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 1.1e-07 60.1 55 43.6
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 1.5e-07 59.7 53 49.1
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.5e-07 59.7 59 42.4
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 1.9e-07 59.3 55 43.6
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 1.9e-07 59.3 55 43.6
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-07 58.9 55 43.6
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.5e-07 58.9 53 43.4
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 2.5e-07 58.9 64 42.2
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.2e-07 58.5 53 45.3
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.2e-07 58.5 53 45.3
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 5.5e-07 57.8 53 47.2
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 7.2e-07 57.4 53 49.1
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 7.2e-07 57.4 47 51.1
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 9.4e-07 57.0 55 45.5
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.2e-06 56.6 53 47.2
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.1e-06 55.8 53 45.3
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 3.6e-06 55.1 42 54.8
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 4.7e-06 54.7 54 44.4
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.7e-06 54.7 53 41.5
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.7e-06 54.7 53 43.4
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 6.1e-06 54.3 55 43.6
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 8.0e-06 53.9 55 43.6


User provided reference genes

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