Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 7.3e-40 167.5 145 100.0
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 2.3e-33 146.0 146 90.4
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 6.2e-31 137.9 145 75.2
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 9.9e-29 130.6 106 87.7
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 2.9e-28 129.0 106 87.7
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 4.9e-28 128.3 151 69.5
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 4.9e-28 128.3 106 91.5
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 5.5e-27 124.8 107 86.9
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 2.7e-26 122.5 106 87.7
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 4.6e-26 121.7 107 88.8
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 1.0e-25 120.6 107 87.9
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.7e-23 112.1 102 75.5
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.2e-21 107.1 102 73.5
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 2.0e-21 106.3 102 72.5
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 4.5e-21 105.1 106 81.1
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.5e-21 105.1 106 81.1
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.5e-21 105.1 106 81.1
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.5e-21 105.1 106 81.1
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.5e-21 105.1 106 81.1
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.5e-21 105.1 106 81.1
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 4.5e-21 105.1 104 79.8
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 5.8e-21 104.8 106 81.1
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 2.2e-20 102.8 109 78.0
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 2.9e-20 102.4 110 54.5
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 4.9e-20 101.7 101 75.2
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 6.5e-20 101.3 99 80.8
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 6.5e-20 101.3 64 70.3
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 1.9e-19 99.8 64 70.3
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.9e-19 99.8 64 70.3
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 2.5e-19 99.4 59 69.5
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 2.5e-19 99.4 59 69.5
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 2.5e-19 99.4 101 74.3
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.2e-19 99.0 59 69.5
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 4.2e-19 98.6 98 76.5
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 7.1e-19 97.8 64 65.6
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 9.3e-19 97.4 65 66.2
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 9.3e-19 97.4 103 74.8
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 9.3e-19 97.4 103 74.8
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 1.2e-18 97.1 104 77.9
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 1.2e-18 97.1 64 71.9
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 1.2e-18 97.1 64 71.9
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 2.1e-18 96.3 156 60.3
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 2.1e-18 96.3 61 72.1
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 2.7e-18 95.9 64 68.8
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 6.0e-18 94.7 103 74.8
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 7.9e-18 94.4 64 65.6
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 1.0e-17 94.0 109 46.8
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 1.0e-17 94.0 69 66.7
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 1.3e-17 93.6 104 76.0
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 1.8e-17 93.2 110 70.9
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.3e-17 92.8 109 69.7
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 3.0e-17 92.4 64 65.6
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 3.9e-17 92.0 107 71.0
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 6.7e-17 91.3 65 66.2
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 8.7e-17 90.9 64 64.1
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 1.1e-16 90.5 66 59.1
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 1.1e-16 90.5 64 64.1
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 1.5e-16 90.1 64 60.9
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 3.3e-16 89.0 64 62.5
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 3.3e-16 89.0 61 63.9
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 4.3e-16 88.6 66 56.1
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 5.7e-16 88.2 62 66.1
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 5.7e-16 88.2 64 60.9
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 7.4e-16 87.8 65 63.1
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 7.4e-16 87.8 64 60.9
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 9.7e-16 87.4 105 68.6
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 1.6e-15 86.7 68 61.8
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 2.2e-15 86.3 64 60.9
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 2.8e-15 85.9 66 54.5
Haze_09713 Corylus avellana HOM05D004357 ORTHO05D005064 2.8e-15 85.9 106 69.8
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 3.7e-15 85.5 64 60.9
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 4.8e-15 85.1 64 60.9
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 4.8e-15 85.1 66 60.6
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 6.3e-15 84.7 109 69.7
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 8.2e-15 84.3 64 62.5
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 8.2e-15 84.3 109 64.2
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 8.2e-15 84.3 71 60.6
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 1.1e-14 84.0 64 57.8
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 1.1e-14 84.0 109 60.6
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 1.4e-14 83.6 64 59.4
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 1.8e-14 83.2 74 56.8
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 3.1e-14 82.4 66 60.6
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 3.1e-14 82.4 103 69.9
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.1e-14 82.0 109 66.1
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 4.1e-14 82.0 74 55.4
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 5.3e-14 81.6 109 63.3
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 5.3e-14 81.6 109 63.3
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 5.3e-14 81.6 99 72.7
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 6.9e-14 81.3 71 62.0
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 9.0e-14 80.9 71 62.0
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 1.2e-13 80.5 71 56.3
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 1.5e-13 80.1 71 60.6
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 2.0e-13 79.7 56 64.3
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 2.6e-13 79.3 71 60.6
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 2.6e-13 79.3 109 66.1
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 2.6e-13 79.3 71 60.6
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 2.6e-13 79.3 64 56.2
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 3.4e-13 79.0 71 60.6
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 3.4e-13 79.0 71 60.6
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 3.4e-13 79.0 71 60.6
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.4e-13 79.0 110 48.2
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 3.4e-13 79.0 66 57.6
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 4.5e-13 78.6 73 56.2
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 5.9e-13 78.2 71 59.2
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 5.9e-13 78.2 71 59.2
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 5.9e-13 78.2 71 59.2
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 5.9e-13 78.2 71 59.2
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 5.9e-13 78.2 63 58.7
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 7.7e-13 77.8 71 59.2
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 7.7e-13 77.8 71 59.2
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 7.7e-13 77.8 71 53.5
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 1.0e-12 77.4 66 56.1
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 1.0e-12 77.4 66 56.1
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 1.0e-12 77.4 109 70.6
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.0e-12 77.4 71 56.3
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.0e-12 77.4 71 59.2
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 1.3e-12 77.0 71 54.9
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 1.7e-12 76.6 107 63.6
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.2e-12 76.3 71 57.7
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 2.9e-12 75.9 71 57.7
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 3.8e-12 75.5 104 66.3
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 3.8e-12 75.5 64 56.2
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 5.0e-12 75.1 82 51.2
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 5.0e-12 75.1 71 54.9
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 5.0e-12 75.1 71 54.9
Peaxi162Scf01626g00015 Petunia axillaris HOM05D004357 ORTHO05D005064 8.5e-12 74.3 45 73.3
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 1.4e-11 73.6 71 56.3
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 1.9e-11 73.2 60 56.7
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 2.5e-11 72.8 109 63.3
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 2.5e-11 72.8 66 51.5
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 5.5e-11 71.6 65 52.3
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 5.5e-11 71.6 65 52.3
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 5.5e-11 71.6 65 52.3
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 5.5e-11 71.6 65 52.3
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 7.2e-11 71.2 66 51.5
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 9.4e-11 70.9 64 56.2
AUR62015824 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.2e-10 70.5 72 47.2
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.1e-10 69.7 62 53.2
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 2.7e-10 69.3 67 52.2
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 2.7e-10 69.3 72 47.2
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.6e-10 68.9 73 50.7
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 4.6e-10 68.6 68 55.9
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 4.6e-10 68.6 65 50.8
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 6.1e-10 68.2 65 49.2
Gohir.D05G372800 Gossypium hirsutum HOM05D004357 ORTHO05D005064 6.1e-10 68.2 59 57.6
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 7.9e-10 67.8 56 51.8
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 7.9e-10 67.8 69 52.2
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.8e-09 66.6 64 51.6
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 1.8e-09 66.6 64 53.1
ATR0585G040 Amborella trichopoda HOM05D002014 ORTHO05D001958 2.3e-09 66.2 99 65.7
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.3e-09 66.2 66 51.5
Migut.J01605 Erythranthe guttata HOM05D004357 ORTHO05D005064 3.9e-09 65.5 109 62.4
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 5.1e-09 65.1 65 49.2
Gorai.009G441300 Gossypium raimondii HOM05D004357 ORTHO05D005064 5.1e-09 65.1 59 55.9
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 1.1e-08 63.9 67 49.3
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 1.1e-08 63.9 67 49.3
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 2.0e-08 63.2 64 48.4
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 2.5e-08 62.8 104 59.6
FvH4_7g17590 Fragaria vesca HOM05D002014 ORTHO05D001958 1.3e-07 60.5 65 43.1
FAN03G3151 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.3e-07 60.5 65 43.1
FAN06G0196 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.3e-07 60.5 65 43.1
FAN06G4303 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.3e-07 60.5 65 43.1
FAN10G4021 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.3e-07 60.5 65 43.1
Gohir.A04G013400 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.7e-07 58.9 58 53.4
CANSAT56G2270 Cannabis sativa HOM05D002014 ORTHO05D001958 8.2e-07 57.8 60 45.0
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-06 57.4 107 62.6
SGA_v2.0_scaffold66G22369 Striga asiatica HOM05D004357 ORTHO05D005064 1.4e-06 57.0 60 45.0
FAN01G2575 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.8e-06 56.6 65 41.5
Thecc.06G225200 Theobroma cacao HOM05D002014 ORTHO05D001958 1.8e-06 56.6 66 40.9
arahy.Tifrunner.gnm1.ann1.DPYD9S Arachis hypogaea HOM05D002014 ORTHO05D001958 2.4e-06 56.2 67 38.8
Duzib235G1176 Durio zibethinus HOM05D002014 ORTHO05D001958 2.4e-06 56.2 66 42.4
arahy.Tifrunner.gnm1.ann1.HIXG1Y Arachis hypogaea HOM05D002014 ORTHO05D001958 3.1e-06 55.8 67 38.8
Duzib235G0981 Durio zibethinus HOM05D002014 ORTHO05D001958 3.1e-06 55.8 66 42.4
Lj6C73T0 Lonicera japonica HOM05D002014 ORTHO05D001958 4.1e-06 55.5 66 43.9
arahy.Tifrunner.gnm1.ann1.DG0M13 Arachis hypogaea HOM05D002014 ORTHO05D001958 9.1e-06 54.3 65 41.5
Thecc.06G225300 Theobroma cacao HOM05D002014 ORTHO05D001958 9.1e-06 54.3 66 39.4


User provided reference genes

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