Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 7.1e-243 843.6 446 100.0
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 8.9e-137 491.1 465 61.5
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 7.1e-126 454.9 476 56.1
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 3.1e-121 439.5 470 57.7
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 1.7e-79 300.8 478 45.0
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 9.4e-78 295.0 486 45.3
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 2.6e-75 287.0 470 45.3
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 4.5e-72 276.2 486 42.8
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 8.5e-71 271.9 495 42.4
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 5.5e-70 269.2 511 40.5
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 9.4e-70 268.5 480 43.3
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 3.0e-68 263.5 465 43.0
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 6.7e-68 262.3 493 39.6
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.0e-67 260.8 432 45.1
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 2.0e-67 260.8 481 40.5
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 9.7e-67 258.5 432 44.9
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.8e-66 256.9 487 40.5
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 8.2e-66 255.4 488 41.6
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 3.5e-64 250.0 479 40.1
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 4.5e-64 249.6 362 46.7
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 2.2e-63 247.3 416 43.8
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 2.9e-63 246.9 469 39.7
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 5.0e-63 246.1 474 40.5
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 2.5e-62 243.8 497 38.8
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 4.2e-62 243.0 478 38.9
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 5.5e-62 242.7 478 41.0
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 7.2e-62 242.3 502 39.0
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 9.4e-62 241.9 471 38.0
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 2.7e-61 240.4 478 37.4
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.7e-61 240.4 474 39.2
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 3.6e-61 240.0 479 40.1
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 1.4e-60 238.0 462 39.4
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 1.4e-60 238.0 531 36.9
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 2.3e-60 237.3 457 40.7
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 6.8e-60 235.7 493 37.5
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 2.0e-59 234.2 459 39.0
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 4.4e-59 233.0 476 40.5
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 4.4e-59 233.0 528 36.6
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 9.8e-59 231.9 496 39.5
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 1.7e-58 231.1 494 39.1
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.8e-58 230.3 424 42.5
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.4e-57 228.0 531 37.1
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 4.1e-57 226.5 454 38.8
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 7.0e-57 225.7 458 38.2
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 9.1e-57 225.3 502 38.0
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 1.2e-56 224.9 425 41.2
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 2.0e-56 224.2 523 38.6
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 1.3e-55 221.5 513 38.6
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 1.7e-55 221.1 531 36.3
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 2.2e-55 220.7 465 37.8
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 6.5e-55 219.2 517 34.0
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 6.5e-55 219.2 429 41.3
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 8.5e-55 218.8 522 35.1
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 4.2e-54 216.5 566 36.0
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 7.2e-54 215.7 547 35.1
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 9.4e-54 215.3 311 44.7
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 9.4e-54 215.3 459 37.0
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 3.6e-53 213.4 459 35.3
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 3.0e-52 210.3 491 38.5
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 3.4e-51 206.8 473 36.8
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 7.5e-51 205.7 566 34.1
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 7.5e-51 205.7 314 46.2
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 7.5e-51 205.7 564 33.7
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 9.8e-51 205.3 440 37.0
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.3e-50 204.9 574 32.8
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.1e-49 201.8 473 35.5
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 2.4e-49 200.7 398 37.9
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 3.1e-49 200.3 524 34.5
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 3.1e-49 200.3 471 39.9
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 4.1e-49 199.9 514 34.4
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 9.1e-49 198.7 578 34.8
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 1.6e-48 198.0 520 34.2
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 7.7e-48 195.7 483 35.6
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 1.3e-47 194.9 366 38.8
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 6.6e-47 192.6 422 37.4
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.1e-46 191.8 562 32.7
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.1e-46 191.8 603 33.2
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 5.5e-46 189.5 525 35.4
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 7.2e-46 189.1 547 31.6
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 9.5e-46 188.7 535 33.3
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 1.6e-45 188.0 532 32.5
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 3.0e-44 183.7 560 33.4
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 5.2e-44 183.0 360 41.1
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 3.4e-43 180.3 575 31.7
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 4.4e-43 179.9 518 34.7
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 2.9e-42 177.2 516 33.1
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 2.9e-42 177.2 423 34.0
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 3.7e-42 176.8 572 30.6
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 3.7e-42 176.8 572 30.6
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 3.7e-42 176.8 512 33.4
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 1.1e-41 175.3 572 30.6
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.4e-41 174.9 390 37.9
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 1.4e-41 174.9 593 30.4
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 1.8e-41 174.5 398 36.2
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 2.4e-41 174.1 580 31.6
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 3.2e-41 173.7 451 33.5
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 7.0e-41 172.6 363 36.4
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.0e-40 171.0 460 35.4
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 1.7e-39 167.9 389 37.8
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 1.7e-39 167.9 337 36.5
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 2.9e-39 167.2 456 33.1
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 3.3e-38 163.7 352 36.4
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 3.3e-38 163.7 352 37.8
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 1.6e-37 161.4 474 33.5
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 6.1e-37 159.5 248 39.5
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.7e-34 151.4 534 29.8
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 4.9e-34 149.8 411 33.1
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 4.1e-33 146.7 455 32.3
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 7.0e-33 146.0 202 43.1
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 7.0e-33 146.0 379 35.4
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 6.0e-32 142.9 338 33.4
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 9.8e-27 125.6 510 28.6
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 4.9e-26 123.2 284 37.3
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 2.6e-11 74.3 208 34.1
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 1.2e-08 65.5 93 47.3
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 7.8e-08 62.8 93 41.9
Mapoly0045s0076 Marchantia polymorpha HOM05D006489 ORTHO05D007556 4.3e-06 57.0 171 33.3


User provided reference genes

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