Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0076511 Helianthus annuus HOM05D001172 ORTHO05D001128 1.2e-69 266.5 151 100.0
Lsat_1_v5_gn_9_93880 Lactuca sativa HOM05D001172 ORTHO05D001128 1.7e-26 123.2 104 73.1
Oeu005528.1 Olea europaea HOM05D001172 ORTHO05D001128 1.4e-22 110.2 98 56.1
Lsat_1_v5_gn_7_108540 Lactuca sativa HOM05D001172 ORTHO05D001128 1.9e-22 109.8 108 56.5
vmacro11725 Vaccinium macrocarpon HOM05D001172 ORTHO05D001128 3.2e-22 109.0 133 48.1
Rhsim06G0217200 Rhododendron simsii HOM05D001172 ORTHO05D001128 4.2e-22 108.6 106 53.8
HanXRQChr11g0337691 Helianthus annuus HOM05D001172 ORTHO05D001128 7.2e-22 107.8 130 54.6
Atru.chr2.3410 Acer truncatum HOM05D001172 ORTHO05D001128 2.1e-21 106.3 103 51.5
MSTRG.6919 Avicennia marina HOM05D001172 ORTHO05D001128 6.1e-21 104.8 105 50.5
Oeu007579.1 Olea europaea HOM05D001172 ORTHO05D001128 6.1e-21 104.8 105 51.4
Dinv40755 Davidia involucrata HOM05D001172 ORTHO05D001128 1.0e-20 104.0 96 55.2
ECA236G3186 Erigeron canadensis HOM05D001172 ORTHO05D001128 1.4e-20 103.6 131 57.3
Migut.M01766 Erythranthe guttata HOM05D001172 ORTHO05D001128 1.4e-20 103.6 96 53.1
Gohir.A01G079600 Gossypium hirsutum HOM05D001172 ORTHO05D001128 3.0e-20 102.4 102 51.0
Nitab4.5_0010106g0010 Nicotiana tabacum HOM05D001172 ORTHO05D001128 3.0e-20 102.4 98 63.3
Gohir.D01G066801 Gossypium hirsutum HOM05D001172 ORTHO05D001128 3.9e-20 102.1 101 51.5
Nitab4.5_0000981g0070 Nicotiana tabacum HOM05D001172 ORTHO05D001128 3.9e-20 102.1 98 55.1
Peaxi162Scf01097g00415 Petunia axillaris HOM05D001172 ORTHO05D001128 3.9e-20 102.1 98 58.2
PGSC0003DMG400027871 Solanum tuberosum HOM05D001172 ORTHO05D001128 3.9e-20 102.1 101 54.5
Ciclev10009352m.g Citrus clementina HOM05D001172 ORTHO05D001128 2.6e-19 99.4 102 52.9
Duzib213G0183 Durio zibethinus HOM05D001172 ORTHO05D001128 2.6e-19 99.4 110 47.3
ECA240G2601 Erigeron canadensis HOM05D001172 ORTHO05D001128 3.3e-19 99.0 91 56.0
Dinv22261 Davidia involucrata HOM05D001172 ORTHO05D001128 5.7e-19 98.2 96 54.2
Actinidia05095 Actinidia chinensis HOM05D001172 ORTHO05D001128 7.4e-19 97.8 96 59.4
MSTRG.15148 Avicennia marina HOM05D001172 ORTHO05D001128 7.4e-19 97.8 103 50.5
unitig_85.g27326 Utricularia gibba HOM05D001172 ORTHO05D001128 9.7e-19 97.4 92 48.9
MSTRG.12973 Avicennia marina HOM05D001172 ORTHO05D001128 1.3e-18 97.1 103 50.5
Thecc.07G036700 Theobroma cacao HOM05D001172 ORTHO05D001128 1.7e-18 96.7 105 48.6
Solyc12g005020.2 Solanum lycopersicum HOM05D001172 ORTHO05D001128 2.2e-18 96.3 101 56.4
Gorai.002G088700 Gossypium raimondii HOM05D001172 ORTHO05D001128 2.8e-18 95.9 106 49.1
Manes.15G071700 Manihot esculenta HOM05D001172 ORTHO05D001128 2.8e-18 95.9 100 50.0
Sopen12g001030 Solanum pennellii HOM05D001172 ORTHO05D001128 2.8e-18 95.9 101 53.5
PGR083G1571 Punica granatum HOM05D001172 ORTHO05D001128 4.8e-18 95.1 98 53.1
Duzib170G0724 Durio zibethinus HOM05D001172 ORTHO05D001128 8.2e-18 94.4 110 46.4
Duzib268G0132 Durio zibethinus HOM05D001172 ORTHO05D001128 8.2e-18 94.4 100 49.0
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 1.1e-17 94.0 105 47.6
Cc05_g13670 Coffea canephora HOM05D001172 ORTHO05D001128 1.4e-17 93.6 81 56.8
Gohir.D13G142800 Gossypium hirsutum HOM05D001172 ORTHO05D001128 1.4e-17 93.6 110 45.5
MD11G1217700 Malus domestica HOM05D001172 ORTHO05D001128 1.4e-17 93.6 111 46.8
Manes.03G129300 Manihot esculenta HOM05D001172 ORTHO05D001128 1.4e-17 93.6 132 41.7
GSVIVG01037651001 Vitis vinifera HOM05D001172 ORTHO05D001128 3.1e-17 92.4 98 51.0
Gohir.A13G138000 Gossypium hirsutum HOM05D001172 ORTHO05D001128 4.1e-17 92.0 110 45.5
Gorai.013G159600 Gossypium raimondii HOM05D001172 ORTHO05D001128 4.1e-17 92.0 110 45.5
Cpa.g.sc12.307 Carica papaya HOM05D001172 ORTHO05D001128 5.3e-17 91.7 98 46.9
Potri.001G435800 Populus trichocarpa HOM05D001172 ORTHO05D001128 7.0e-17 91.3 103 47.6
Duzib268G0571 Durio zibethinus HOM05D001172 ORTHO05D001128 1.6e-16 90.1 105 45.7
Sabra16G0289900 Salix brachista HOM05D001172 ORTHO05D001128 1.6e-16 90.1 102 47.1
SGA_v2.0_scaffold172G38998 Striga asiatica HOM05D001172 ORTHO05D001128 1.6e-16 90.1 121 42.1
Glyma.02G291200 Glycine max HOM05D001172 ORTHO05D001128 4.5e-16 88.6 101 46.5
MD03G1200700 Malus domestica HOM05D001172 ORTHO05D001128 4.5e-16 88.6 95 49.5
DCAR_016706 Daucus carota HOM05D001172 ORTHO05D001128 5.9e-16 88.2 102 58.8
Medtr5g092790 Medicago truncatula HOM05D001172 ORTHO05D001128 1.0e-15 87.4 100 45.0
RhsimUnG0250400 Rhododendron simsii HOM05D001172 ORTHO05D001128 1.7e-15 86.7 101 54.5
CiPaw.12G129900 Carya illinoinensis HOM05D001172 ORTHO05D001128 2.9e-15 85.9 108 42.6
Medtr5g092750 Medicago truncatula HOM05D001172 ORTHO05D001128 3.8e-15 85.5 102 44.1
QL08p010134 Quercus lobata HOM05D001172 ORTHO05D001128 5.0e-15 85.1 106 45.3
Oeu042938.1 Olea europaea HOM05D001172 ORTHO05D001128 8.5e-15 84.3 109 45.9
Phvul.008G266700 Phaseolus vulgaris HOM05D001172 ORTHO05D001128 8.5e-15 84.3 96 46.9
Lalb_Chr04g0248411 Lupinus albus HOM05D001172 ORTHO05D001128 1.1e-14 84.0 103 41.7
Ah.09g234940 Amaranthus hybridus HOM05D001172 ORTHO05D001128 1.5e-14 83.6 104 41.3
Lalb_Chr17g0348501 Lupinus albus HOM05D001172 ORTHO05D001128 1.5e-14 83.6 101 41.6
unitig_62.g23283 Utricularia gibba HOM05D001172 ORTHO05D001128 2.5e-14 82.8 83 54.2
VMungo0647G1003 Vigna mungo HOM05D001172 ORTHO05D001128 2.5e-14 82.8 109 45.9
Actinidia10735 Actinidia chinensis HOM05D001172 ORTHO05D001128 3.2e-14 82.4 121 38.0
FAN16G0205 Fragaria x ananassa HOM05D001172 ORTHO05D001128 5.5e-14 81.6 97 42.3
Ca_06321_v3 Cicer arietinum L. HOM05D001172 ORTHO05D001128 1.2e-13 80.5 95 44.2
Ca_30810_v3 Cicer arietinum L. HOM05D001172 ORTHO05D001128 1.2e-13 80.5 95 44.2
FvH4_3g22710 Fragaria vesca HOM05D001172 ORTHO05D001128 1.2e-13 80.5 97 42.3
FAN11G1361 Fragaria x ananassa HOM05D001172 ORTHO05D001128 1.2e-13 80.5 97 42.3
Psat2g011480 Pisum sativum HOM05D001172 ORTHO05D001128 1.2e-13 80.5 100 42.0
TPR.G1207 Trifolium pratense HOM05D001172 ORTHO05D001128 1.2e-13 80.5 100 43.0
Ah.14g088030 Amaranthus hybridus HOM05D001172 ORTHO05D001128 2.1e-13 79.7 94 44.7
Nn6g33559 Nelumbo nucifera HOM05D001172 ORTHO05D001128 2.1e-13 79.7 100 44.0
Psat2g010840 Pisum sativum HOM05D001172 ORTHO05D001128 1.0e-12 77.4 95 40.0
AUR62012703 Chenopodium quinoa HOM05D001172 ORTHO05D001128 1.8e-12 76.6 103 42.7
EL10Ac8g20051 Beta vulgaris HOM05D001172 ORTHO05D001128 3.0e-12 75.9 97 42.3
Sc05g0009900 Simmondsia chinensis HOM05D001172 ORTHO05D001128 6.7e-12 74.7 90 43.3
VMungo0540G1772 Vigna mungo HOM05D001172 ORTHO05D001128 6.7e-12 74.7 96 40.6
AUR62021956 Chenopodium quinoa HOM05D001172 ORTHO05D001128 1.2e-11 73.9 103 40.8
AUR62044528 Chenopodium quinoa HOM05D001172 ORTHO05D001128 1.2e-11 73.9 103 40.8
Haze_09677 Corylus avellana HOM05D001172 ORTHO05D001128 1.2e-11 73.9 88 45.5
Migut.H01826 Erythranthe guttata HOM05D001172 ORTHO05D001128 1.2e-11 73.9 105 41.0
Glyma.08G316400 Glycine max HOM05D001172 ORTHO05D001128 2.0e-11 73.2 94 42.6
Glyma.18G096600 Glycine max HOM05D001172 ORTHO05D001128 2.6e-11 72.8 108 40.7
Nn1g00140 Nelumbo nucifera HOM05D001172 ORTHO05D001128 2.6e-11 72.8 106 41.5
LjContig00272g0027997 Lotus japonicus HOM05D001172 ORTHO05D001128 3.3e-11 72.4 96 43.8
HPP92_001776 Vanilla planifolia HOM05D001172 ORTHO05D001128 3.3e-11 72.4 97 40.2
Phvul.006G043600 Phaseolus vulgaris HOM05D001172 ORTHO05D001128 4.4e-11 72.0 100 39.0
RcHm_v2.0_Chr5g0039601 Rosa chinensis HOM05D001172 ORTHO05D001128 4.4e-11 72.0 97 43.3
Hund23471 Selenicereus undatus HOM05D001172 ORTHO05D001128 4.4e-11 72.0 83 45.8
Aqoxy1G02163 Aquilegia oxysepala HOM05D001172 ORTHO05D001128 5.7e-11 71.6 101 38.6
Hund21407 Selenicereus undatus HOM05D001172 ORTHO05D001128 5.7e-11 71.6 101 41.6
Ca_14727_v3 Cicer arietinum L. HOM05D001172 ORTHO05D001128 1.7e-10 70.1 98 39.8
MBI18_g14469_MAGBIO Magnolia biondii HOM05D001172 ORTHO05D001128 1.7e-10 70.1 84 40.5
arahy.Tifrunner.gnm1.ann1.37ETDL Arachis hypogaea HOM05D001172 ORTHO05D001128 2.2e-10 69.7 110 34.5
Sabra11G0125700 Salix brachista HOM05D001172 ORTHO05D001128 2.2e-10 69.7 73 45.2
PSO675G0002 Papaver somniferum HOM05D001172 ORTHO05D001128 3.7e-10 68.9 137 37.2
TAR626G0297 Trochodendron aralioides HOM05D001172 ORTHO05D001128 3.7e-10 68.9 103 47.6
arahy.Tifrunner.gnm1.ann1.0SLH0U Arachis hypogaea HOM05D001172 ORTHO05D001128 8.2e-10 67.8 110 34.5
Oeu037455.1 Olea europaea HOM05D001172 ORTHO05D001128 7.0e-09 64.7 67 49.3
Nn6g33558 Nelumbo nucifera HOM05D001172 ORTHO05D001128 1.2e-08 63.9 102 46.1
PSO541G4348 Papaver somniferum HOM05D001172 ORTHO05D001128 1.2e-08 63.9 76 40.8
Eucgr.F00762 Eucalyptus grandis HOM05D001172 ORTHO05D001128 1.6e-08 63.5 100 45.0
HanXRQChr15g0494371 Helianthus annuus HOM05D001172 ORTHO05D001128 2.7e-08 62.8 94 38.3
Lalb_Chr10g0106981 Lupinus albus HOM05D001172 ORTHO05D001128 3.5e-08 62.4 106 34.0
CDE02G4161 Ceratophyllum demersum HOM05D000355 ORTHO05D000227 1.3e-07 60.5 103 38.8
CDE05G0695 Ceratophyllum demersum HOM05D001172 ORTHO05D001128 2.2e-07 59.7 103 38.8
Prupe.4G213600 Prunus persica HOM05D001172 ORTHO05D001128 1.1e-06 57.4 46 56.5
Thhalv10022113m.g Eutrema salsugineum HOM05D001172 ORTHO05D001128 9.4e-06 54.3 96 34.4


User provided reference genes

Program Settings