Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 1.0e-97 360.1 188 100.0
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 4.2e-80 301.6 176 89.2
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 5.5e-80 301.2 190 83.7
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 1.8e-59 233.0 189 65.6
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 4.1e-59 231.9 188 63.3
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 4.1e-59 231.9 188 67.6
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 4.1e-59 231.9 188 63.3
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 4.1e-59 231.9 188 63.3
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 7.0e-59 231.1 188 66.0
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 9.2e-59 230.7 188 67.6
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 4.5e-58 228.4 188 62.2
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 5.9e-58 228.0 188 62.2
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 1.3e-57 226.9 191 62.3
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 1.7e-57 226.5 188 64.9
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 2.3e-57 226.1 190 63.7
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 3.8e-57 225.3 188 63.8
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 5.0e-57 224.9 188 62.2
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 5.0e-57 224.9 188 61.7
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 5.0e-57 224.9 188 63.3
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 6.6e-57 224.6 190 64.2
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 1.5e-56 223.4 202 59.4
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 1.5e-56 223.4 199 59.8
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 1.9e-56 223.0 188 65.4
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 4.3e-56 221.9 189 63.0
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 5.6e-56 221.5 188 61.7
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 5.6e-56 221.5 188 62.8
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 7.3e-56 221.1 193 64.2
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 9.5e-56 220.7 189 62.4
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 1.2e-55 220.3 188 61.7
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 1.2e-55 220.3 188 61.7
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 1.2e-55 220.3 188 66.0
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.6e-55 219.9 190 62.1
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 2.1e-55 219.5 191 60.2
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 2.1e-55 219.5 187 62.6
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 3.6e-55 218.8 188 62.2
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 4.7e-55 218.4 188 61.2
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 4.7e-55 218.4 188 60.6
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 6.1e-55 218.0 196 61.7
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 3.0e-54 215.7 190 62.1
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 4.0e-54 215.3 190 58.9
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 6.8e-54 214.5 188 60.6
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 6.8e-54 214.5 189 61.4
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 6.8e-54 214.5 188 60.6
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 6.8e-54 214.5 188 60.6
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 8.9e-54 214.2 189 60.8
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 8.9e-54 214.2 192 60.9
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 1.2e-53 213.8 188 61.2
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 1.2e-53 213.8 188 60.1
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 1.5e-53 213.4 188 62.8
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 3.4e-53 212.2 188 59.0
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 3.4e-53 212.2 188 60.6
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 5.7e-53 211.5 188 60.1
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 7.5e-53 211.1 188 59.6
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 9.8e-53 210.7 188 59.6
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 9.8e-53 210.7 188 59.6
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 1.3e-52 210.3 188 62.2
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 1.3e-52 210.3 189 59.3
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.1e-51 207.2 188 58.5
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 1.8e-51 206.5 187 58.3
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 2.4e-51 206.1 188 56.4
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 2.4e-51 206.1 188 60.1
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 7.0e-51 204.5 190 60.0
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 2.7e-50 202.6 230 50.4
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 1.3e-49 200.3 189 57.7
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 1.7e-49 199.9 217 55.3
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 8.6e-49 197.6 188 54.8
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 8.6e-49 197.6 190 58.9
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 2.5e-48 196.1 190 57.4
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 7.3e-48 194.5 227 50.2
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 6.2e-47 191.4 134 69.4
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 8.0e-47 191.0 133 70.7
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 8.0e-47 191.0 133 69.9
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 1.4e-46 190.3 151 64.2
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 1.8e-46 189.9 188 54.3
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 1.8e-46 189.9 189 55.0
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 3.1e-46 189.1 188 54.8
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 4.0e-46 188.7 184 56.5
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 5.2e-46 188.3 156 64.1
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 8.9e-46 187.6 133 67.7
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 9.8e-45 184.1 188 56.9
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 9.8e-45 184.1 168 59.5
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 2.2e-44 183.0 188 54.3
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.1e-43 180.6 210 49.5
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 1.9e-43 179.9 133 63.9
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 2.4e-43 179.5 168 58.9
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 5.4e-43 178.3 189 51.9
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 3.5e-42 175.6 187 50.8
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 7.8e-42 174.5 153 61.4
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 1.3e-41 173.7 190 53.7
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 1.7e-41 173.3 153 61.4
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 3.9e-41 172.2 133 63.2
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.5e-40 170.2 150 62.7
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 1.8e-38 163.3 135 68.1
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 4.4e-37 158.7 133 61.7
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 1.3e-36 157.1 142 62.0
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 2.2e-36 156.4 192 47.9
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 8.3e-36 154.5 188 49.5
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 3.9e-33 145.6 218 40.8
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 1.2e-31 140.6 209 44.5
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 2.8e-31 139.4 118 58.5
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 1.2e-29 134.0 91 67.0
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 1.5e-29 133.7 123 56.1
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 1.1e-27 127.5 126 55.6
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.6e-26 123.6 88 65.9
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.7e-25 120.2 74 68.9
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.1e-24 117.5 122 56.6
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.1e-24 117.5 122 56.6
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 2.1e-23 113.2 174 39.1
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 4.9e-20 102.1 224 34.8
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 1.9e-19 100.1 212 34.9
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 9.3e-19 97.8 115 57.4
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 3.5e-18 95.9 173 37.6
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 2.0e-13 80.1 113 46.0
DCAR_000990 Daucus carota HOM05D006936 ORTHO05D008273 6.7e-09 65.1 65 61.5
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 1.8e-06 57.0 50 58.0


User provided reference genes

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