Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 1.1e-57 226.5 115 100.0
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 2.9e-47 191.8 107 91.6
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 6.0e-45 184.1 107 87.9
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 3.3e-43 178.3 107 83.2
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 1.8e-41 172.6 105 81.0
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 6.9e-41 170.6 105 81.0
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 1.5e-40 169.5 105 80.0
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 2.0e-40 169.1 105 78.1
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 2.6e-40 168.7 105 81.0
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 2.6e-40 168.7 105 81.0
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 2.6e-40 168.7 105 78.1
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 2.6e-40 168.7 105 78.1
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 3.4e-40 168.3 105 80.0
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 4.5e-40 167.9 105 79.0
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 4.5e-40 167.9 105 79.0
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 7.6e-40 167.2 105 78.1
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 7.6e-40 167.2 105 78.1
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 7.6e-40 167.2 105 80.0
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 9.9e-40 166.8 105 79.0
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 9.9e-40 166.8 105 79.0
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 9.9e-40 166.8 105 79.0
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 1.3e-39 166.4 105 78.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 1.3e-39 166.4 105 80.0
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 1.7e-39 166.0 105 78.1
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.7e-39 166.0 105 80.0
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 1.7e-39 166.0 105 79.0
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 1.7e-39 166.0 105 78.1
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 1.7e-39 166.0 105 79.0
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.2e-39 165.6 103 79.6
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 2.2e-39 165.6 105 79.0
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 2.2e-39 165.6 105 77.1
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 2.9e-39 165.2 105 76.2
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 2.9e-39 165.2 105 79.0
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.8e-39 164.9 103 80.6
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 3.8e-39 164.9 105 76.2
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 3.8e-39 164.9 105 77.1
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 3.8e-39 164.9 105 77.1
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 3.8e-39 164.9 105 77.1
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 4.9e-39 164.5 105 78.1
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 4.9e-39 164.5 105 77.1
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 4.9e-39 164.5 105 77.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 4.9e-39 164.5 105 77.1
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 4.9e-39 164.5 105 77.1
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 4.9e-39 164.5 105 78.1
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 4.9e-39 164.5 105 76.2
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 4.9e-39 164.5 105 76.2
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 6.4e-39 164.1 103 77.7
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 6.4e-39 164.1 105 76.2
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 6.4e-39 164.1 105 76.2
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 6.4e-39 164.1 105 79.0
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 1.1e-38 163.3 105 76.2
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 1.1e-38 163.3 105 76.2
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 1.4e-38 162.9 105 76.2
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.4e-38 162.9 105 76.2
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 1.9e-38 162.5 105 76.2
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 1.9e-38 162.5 105 76.2
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 1.9e-38 162.5 105 76.2
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.9e-38 162.5 105 76.2
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 1.9e-38 162.5 105 76.2
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 1.9e-38 162.5 105 77.1
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 1.9e-38 162.5 105 77.1
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 2.4e-38 162.2 105 77.1
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 2.4e-38 162.2 105 76.2
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.4e-38 162.2 103 79.6
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 3.2e-38 161.8 105 75.2
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 4.2e-38 161.4 105 76.2
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 4.2e-38 161.4 105 76.2
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 5.5e-38 161.0 105 75.2
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 7.1e-38 160.6 107 74.8
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 9.3e-38 160.2 103 76.7
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 9.3e-38 160.2 105 76.2
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 1.2e-37 159.8 105 76.2
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 1.6e-37 159.5 105 75.2
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 1.6e-37 159.5 105 76.2
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 1.6e-37 159.5 98 78.6
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 1.6e-37 159.5 98 80.6
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 1.6e-37 159.5 98 80.6
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 2.1e-37 159.1 105 75.2
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 2.1e-37 159.1 105 74.3
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 2.1e-37 159.1 103 74.8
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 2.7e-37 158.7 105 74.3
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 4.6e-37 157.9 105 74.3
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 1.3e-36 156.4 105 72.4
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.3e-36 156.4 105 72.4
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.3e-36 156.4 105 72.4
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 1.1e-35 153.3 135 62.2
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 3.7e-34 148.3 95 77.9
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.7e-34 148.3 100 75.0
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 3.7e-34 148.3 105 72.4
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 1.1e-33 146.7 103 73.8
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 2.0e-32 142.5 107 67.3
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 7.6e-32 140.6 105 70.5
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 1.0e-31 140.2 98 70.4
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 3.5e-29 131.7 100 64.0
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 6.0e-29 131.0 77 81.8
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 3.0e-28 128.6 100 63.0
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 6.5e-23 110.9 70 75.7
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 3.2e-22 108.6 100 54.0
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 5.5e-22 107.8 107 52.3
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.4e-16 88.6 105 50.5
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 6.7e-12 74.3 104 40.4


User provided reference genes

Program Settings