Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0075571 Helianthus annuus HOM05D004523 ORTHO05D006021 3.0e-75 285.0 139 100.0
HanXRQChr04g0105481 Helianthus annuus HOM05D004523 ORTHO05D006021 3.0e-75 285.0 139 100.0
HanXRQChr12g0357661 Helianthus annuus HOM05D004523 ORTHO05D006021 6.1e-60 234.2 118 98.3
HanXRQChr04g0106361 Helianthus annuus HOM05D004523 ORTHO05D006021 1.9e-45 186.0 176 59.1
HanXRQChr02g0044011 Helianthus annuus HOM05D004523 ORTHO05D006021 8.1e-36 154.1 179 50.8
Dinv31821 Davidia involucrata HOM05D004523 ORTHO05D006021 2.6e-34 149.1 183 47.0
Actinidia15399 Actinidia chinensis HOM05D004523 ORTHO05D006021 7.5e-34 147.5 181 46.4
Rhsim06G0025000 Rhododendron simsii HOM05D004523 ORTHO05D006021 7.5e-34 147.5 181 46.4
RhsimUnG0148000 Rhododendron simsii HOM05D004523 ORTHO05D006021 7.5e-34 147.5 181 46.4
EL10Ac1g00454 Beta vulgaris HOM05D004523 ORTHO05D006021 3.7e-33 145.2 136 54.4
ECA247G3421 Erigeron canadensis HOM05D004523 ORTHO05D006021 4.9e-33 144.8 175 48.0
Lj4A28G65 Lonicera japonica HOM05D004523 ORTHO05D006021 2.1e-31 139.4 181 44.2
CSS0014696 Camellia sinensis var. sinensis HOM05D004523 ORTHO05D006021 2.7e-31 139.0 181 45.3
Hma1.2p1_1339F.1_g276600 Hydrangea macrophylla HOM05D004523 ORTHO05D006021 2.7e-31 139.0 181 44.8
Peaxi162Scf00287g01630 Petunia axillaris HOM05D004523 ORTHO05D006021 2.7e-31 139.0 186 45.2
CiPaw.07G152800 Carya illinoinensis HOM05D004523 ORTHO05D006021 4.6e-31 138.3 181 45.3
Cc10_g01960 Coffea canephora HOM05D004523 ORTHO05D006021 4.6e-31 138.3 181 45.3
Eucgr.F02093 Eucalyptus grandis HOM05D004523 ORTHO05D006021 6.0e-31 137.9 180 44.4
Duzib093G2179 Durio zibethinus HOM05D004523 ORTHO05D006021 1.3e-30 136.7 181 44.8
Gohir.D06G001500 Gossypium hirsutum HOM05D004523 ORTHO05D006021 1.3e-30 136.7 181 44.8
Gorai.009G270600 Gossypium raimondii HOM05D004523 ORTHO05D006021 1.3e-30 136.7 181 44.8
Gorai.010G005900 Gossypium raimondii HOM05D004523 ORTHO05D006021 1.3e-30 136.7 181 44.8
PGR031G3749 Punica granatum HOM05D004523 ORTHO05D006021 1.3e-30 136.7 187 42.8
Gohir.A05G257600 Gossypium hirsutum HOM05D004523 ORTHO05D006021 1.7e-30 136.3 181 44.2
unitig_32.g11145 Utricularia gibba HOM05D004523 ORTHO05D006021 1.7e-30 136.3 127 55.9
Gohir.D05G259000 Gossypium hirsutum HOM05D004523 ORTHO05D006021 3.0e-30 135.6 173 45.7
Potri.005G236000 Populus trichocarpa HOM05D004523 ORTHO05D006021 3.0e-30 135.6 168 44.6
Solyc04g081200.3 Solanum lycopersicum HOM05D004523 ORTHO05D006021 3.0e-30 135.6 178 44.9
Sopen04g034810 Solanum pennellii HOM05D004523 ORTHO05D006021 3.0e-30 135.6 178 44.9
COL.COLO4_26176 Corchorus olitorius HOM05D004523 ORTHO05D006021 3.9e-30 135.2 181 43.6
MD15G1014900 Malus domestica HOM05D004523 ORTHO05D006021 3.9e-30 135.2 181 42.5
Sabra05G0182400 Salix brachista HOM05D004523 ORTHO05D006021 3.9e-30 135.2 177 42.9
PGSC0003DMG400003721 Solanum tuberosum HOM05D004523 ORTHO05D006021 3.9e-30 135.2 175 44.6
MSTRG.1214 Avicennia marina HOM05D004523 ORTHO05D006021 5.1e-30 134.8 185 44.9
RcHm_v2.0_Chr6g0302441 Rosa chinensis HOM05D004523 ORTHO05D006021 5.1e-30 134.8 183 43.7
FvH4_2g38830 Fragaria vesca HOM05D004523 ORTHO05D006021 6.6e-30 134.4 183 43.7
Gohir.A06G005700 Gossypium hirsutum HOM05D004523 ORTHO05D006021 6.6e-30 134.4 181 44.2
MD08G1015900 Malus domestica HOM05D004523 ORTHO05D006021 8.6e-30 134.0 181 42.5
Lsat_1_v5_gn_4_114800 Lactuca sativa HOM05D004523 ORTHO05D006021 1.1e-29 133.7 180 45.0
FAN27G1233 Fragaria x ananassa HOM05D004523 ORTHO05D006021 1.5e-29 133.3 183 43.2
CAN.G1271.10 Capsicum annuum HOM05D004523 ORTHO05D006021 1.9e-29 132.9 168 45.2
Thecc.08G039300 Theobroma cacao HOM05D004523 ORTHO05D006021 1.9e-29 132.9 181 43.1
Potri.002G026600 Populus trichocarpa HOM05D004523 ORTHO05D006021 2.5e-29 132.5 164 45.1
Manes.05G151200 Manihot esculenta HOM05D004523 ORTHO05D006021 3.3e-29 132.1 184 44.0
GSVIVG01009847001 Vitis vinifera HOM05D004523 ORTHO05D006021 3.3e-29 132.1 188 43.6
Carub.0001s1940 Capsella rubella HOM05D004523 ORTHO05D006021 5.6e-29 131.3 179 43.0
Prupe.1G369200 Prunus persica HOM05D004523 ORTHO05D006021 5.6e-29 131.3 181 43.1
AL1G32610 Arabidopsis lyrata HOM05D004523 ORTHO05D006021 7.3e-29 131.0 183 42.6
THA.LOC104809379 Tarenaya hassleriana HOM05D004523 ORTHO05D006021 7.3e-29 131.0 181 43.6
QL02p010964 Quercus lobata HOM05D004523 ORTHO05D006021 1.2e-28 130.2 179 44.7
MSTRG.25223 Avicennia marina HOM05D004523 ORTHO05D006021 1.6e-28 129.8 164 45.1
Manes.18G016300 Manihot esculenta HOM05D004523 ORTHO05D006021 1.6e-28 129.8 168 42.9
Oeu007351.3 Olea europaea HOM05D004523 ORTHO05D006021 1.6e-28 129.8 164 45.7
CANSAT80G1473 Cannabis sativa HOM05D004523 ORTHO05D006021 2.1e-28 129.4 176 43.8
PSO675G7270 Papaver somniferum HOM05D004523 ORTHO05D006021 2.8e-28 129.0 176 44.3
arahy.Tifrunner.gnm1.ann1.F7HX5D Arachis hypogaea HOM05D004523 ORTHO05D006021 3.6e-28 128.6 180 42.2
BcaB03g14360 Brassica carinata HOM05D004523 ORTHO05D006021 3.6e-28 128.6 174 43.1
BcaB07g32006 Brassica carinata HOM05D004523 ORTHO05D006021 3.6e-28 128.6 175 42.3
C07p23650 Brassica napus HOM05D004523 ORTHO05D006021 3.6e-28 128.6 174 43.1
BolC7t42897H Brassica oleracea HOM05D004523 ORTHO05D006021 3.6e-28 128.6 174 43.1
Cfa013919 Carpinus fangiana HOM05D004523 ORTHO05D006021 3.6e-28 128.6 169 43.8
Thhalv10007331m.g Eutrema salsugineum HOM05D004523 ORTHO05D006021 3.6e-28 128.6 175 42.3
Rhsim07G0245600 Rhododendron simsii HOM05D004523 ORTHO05D006021 3.6e-28 128.6 161 42.9
Hund17232 Selenicereus undatus HOM05D004523 ORTHO05D006021 3.6e-28 128.6 181 43.6
AT1G19880 Arabidopsis thaliana HOM05D004523 ORTHO05D006021 4.7e-28 128.3 179 41.3
Ciclev10000798m.g Citrus clementina HOM05D004523 ORTHO05D006021 4.7e-28 128.3 169 41.4
Dinv39495 Davidia involucrata HOM05D004523 ORTHO05D006021 4.7e-28 128.3 157 45.9
Nitab4.5_0005185g0050 Nicotiana tabacum HOM05D004523 ORTHO05D006021 4.7e-28 128.3 175 43.4
Aqoxy6G02327 Aquilegia oxysepala HOM05D004523 ORTHO05D006021 8.1e-28 127.5 181 41.4
CARHR020380 Cardamine hirsuta HOM05D004523 ORTHO05D006021 8.1e-28 127.5 181 42.0
TWI56G1290 Tripterygium wilfordii HOM05D004523 ORTHO05D006021 8.1e-28 127.5 177 41.2
BcaB03g14429 Brassica carinata HOM05D004523 ORTHO05D006021 1.1e-27 127.1 176 42.6
Migut.C00821 Erythranthe guttata HOM05D004523 ORTHO05D006021 1.1e-27 127.1 181 43.6
Sed0001890 Sechium edule HOM05D004523 ORTHO05D006021 1.1e-27 127.1 192 39.6
Atru.chr13.334 Acer truncatum HOM05D004523 ORTHO05D006021 1.4e-27 126.7 184 41.3
A07p16200 Brassica napus HOM05D004523 ORTHO05D006021 2.3e-27 125.9 174 42.5
BraA07t29346Z Brassica rapa HOM05D004523 ORTHO05D006021 2.3e-27 125.9 174 42.5
Cpa.g.sc26.20 Carica papaya HOM05D004523 ORTHO05D006021 2.3e-27 125.9 183 42.1
Ca_02055_v3 Cicer arietinum L. HOM05D004523 ORTHO05D006021 2.3e-27 125.9 183 41.0
Sabra02G0020700 Salix brachista HOM05D004523 ORTHO05D006021 2.3e-27 125.9 160 43.1
ClCG05G018540 Citrullus lanatus HOM05D004523 ORTHO05D006021 5.2e-27 124.8 176 40.9
Medtr3g113250 Medicago truncatula HOM05D004523 ORTHO05D006021 5.2e-27 124.8 177 40.7
Psat5g014360 Pisum sativum HOM05D004523 ORTHO05D006021 5.2e-27 124.8 193 37.3
Sp1g17680 Schrenkiella parvula HOM05D004523 ORTHO05D006021 5.2e-27 124.8 184 41.3
CsaV3_3G045630 Cucumis sativus L. HOM05D004523 ORTHO05D006021 6.8e-27 124.4 176 39.8
vmacro21709 Vaccinium macrocarpon HOM05D004523 ORTHO05D006021 6.8e-27 124.4 152 46.1
Nn6g32283 Nelumbo nucifera HOM05D004523 ORTHO05D006021 8.9e-27 124.0 181 40.9
TAR625G0232 Trochodendron aralioides HOM05D004523 ORTHO05D006021 8.9e-27 124.0 182 40.7
MELO3C003774.2 Cucumis melo HOM05D004523 ORTHO05D006021 1.2e-26 123.6 176 40.3
Glyma.04G026100 Glycine max HOM05D004523 ORTHO05D006021 1.2e-26 123.6 164 42.1
Phvul.009G015100 Phaseolus vulgaris HOM05D004523 ORTHO05D006021 1.2e-26 123.6 164 41.5
CANSAT25G1932 Cannabis sativa HOM05D004523 ORTHO05D006021 1.5e-26 123.2 182 40.1
ECA232G3022 Erigeron canadensis HOM05D004523 ORTHO05D006021 1.5e-26 123.2 172 43.0
TAR376G0074 Trochodendron aralioides HOM05D004523 ORTHO05D006021 1.5e-26 123.2 172 41.3
Glyma.06G025900 Glycine max HOM05D004523 ORTHO05D006021 2.0e-26 122.9 164 42.1
Lalb_Chr11g0062021 Lupinus albus HOM05D004523 ORTHO05D006021 2.0e-26 122.9 180 39.4
TPR.G30285 Trifolium pratense HOM05D004523 ORTHO05D006021 2.0e-26 122.9 177 40.1
AUR62019141 Chenopodium quinoa HOM05D004523 ORTHO05D006021 2.6e-26 122.5 180 38.9
Sed0024533 Sechium edule HOM05D004523 ORTHO05D006021 3.4e-26 122.1 176 39.8
SalBow7G1964 Salvia bowleyana HOM05D004523 ORTHO05D006021 5.8e-26 121.3 163 42.9
VMungo1309G0339 Vigna mungo HOM05D004523 ORTHO05D006021 9.9e-26 120.6 181 39.2
CDE09G0069 Ceratophyllum demersum HOM05D004523 ORTHO05D006021 1.3e-25 120.2 177 39.0
FAN15G3344 Fragaria x ananassa HOM05D004523 ORTHO05D006021 1.3e-25 120.2 169 43.8
Zm00001eb432950 Zea mays HOM05D004523 ORTHO05D006021 1.3e-25 120.2 170 41.8
BcaB03g14359 Brassica carinata HOM05D004523 ORTHO05D006021 2.9e-25 119.0 174 42.0
Lsat_1_v5_gn_1_16121 Lactuca sativa HOM05D004523 ORTHO05D006021 2.9e-25 119.0 168 45.2
Sc02g0004880 Simmondsia chinensis HOM05D004523 ORTHO05D006021 2.9e-25 119.0 169 40.2
Oeu024517.1 Olea europaea HOM05D004523 ORTHO05D006021 4.9e-25 118.2 196 39.8
Nn5g29261 Nelumbo nucifera HOM05D004523 ORTHO05D006021 6.4e-25 117.9 178 40.4
Haze_22594 Corylus avellana HOM05D004523 ORTHO05D006021 5.4e-24 114.8 234 33.8
arahy.Tifrunner.gnm1.ann1.22W300 Arachis hypogaea HOM05D004523 ORTHO05D006021 7.1e-24 114.4 166 42.8
Lalb_Chr08g0246121 Lupinus albus HOM05D004523 ORTHO05D006021 1.2e-23 113.6 180 37.8
Os04g0662800 Oryza sativa ssp. japonica HOM05D004523 ORTHO05D006021 1.2e-23 113.6 160 40.6
Lj1g0008508 Lotus japonicus HOM05D004523 ORTHO05D006021 1.6e-23 113.2 177 37.9
SHI08088 Sapria himalayana HOM05D000624 ORTHO05D006021 1.6e-23 113.2 170 39.4
DCAR_022439 Daucus carota HOM05D004523 ORTHO05D006021 2.7e-23 112.5 187 38.0
PSO782G4507 Papaver somniferum HOM05D004523 ORTHO05D006021 2.7e-23 112.5 199 38.7
BraA06t24714Z Brassica rapa HOM05D004523 ORTHO05D006021 3.5e-23 112.1 161 41.0
Oeu007048.1 Olea europaea HOM05D004523 ORTHO05D006021 4.6e-23 111.7 184 39.7
AUR62014404 Chenopodium quinoa HOM05D004523 ORTHO05D006021 6.0e-23 111.3 201 35.8
CSS0004717 Camellia sinensis var. sinensis HOM05D004523 ORTHO05D006021 7.8e-23 110.9 71 71.8
SEGI_37381 Sequoiadendron giganteum HOM05D004523 ORTHO05D006021 7.8e-23 110.9 160 40.0
PSO478G0253 Papaver somniferum HOM05D004523 ORTHO05D006021 1.0e-22 110.5 168 39.9
PSO782G5581 Papaver somniferum HOM05D004523 ORTHO05D006021 1.0e-22 110.5 168 39.9
PSO478G2324 Papaver somniferum HOM05D004523 ORTHO05D006021 1.7e-22 109.8 199 38.2
HPP92_024533 Vanilla planifolia HOM05D004523 ORTHO05D006021 1.7e-22 109.8 179 39.1
SGA_v2.0_scaffold92G28268 Striga asiatica HOM05D004523 ORTHO05D006021 8.6e-22 107.5 195 37.9
Aa31LG7G4380 Aethionema arabicum HOM05D004523 ORTHO05D006021 6.2e-20 101.3 156 42.9
ATR0147G022 Amborella trichopoda HOM05D004523 ORTHO05D006021 1.1e-19 100.5 90 57.8
FAN20G1124 Fragaria x ananassa HOM05D004523 ORTHO05D006021 1.1e-19 100.5 172 39.5
Pp3c23_7830 Physcomitrium patens HOM05D004523 ORTHO05D006021 4.9e-17 91.7 178 32.0
SMO164G0139 Selaginella moellendorffii HOM05D004523 ORTHO05D006021 6.4e-17 91.3 71 60.6
Mapoly0046s0091 Marchantia polymorpha HOM05D004523 ORTHO05D006021 8.4e-17 90.9 92 48.9
vmacro04335 Vaccinium macrocarpon HOM05D004523 ORTHO05D006021 4.2e-16 88.6 164 37.8
SGA_v2.0_scaffold11G05887 Striga asiatica HOM05D004523 ORTHO05D006021 7.8e-15 84.3 121 43.0
C05p18390 Brassica napus HOM05D004523 ORTHO05D006021 2.3e-14 82.8 73 56.2
BcaC05g25883 Brassica carinata HOM05D004523 ORTHO05D006021 8.7e-14 80.9 60 65.0
CBR_g15958 Chara braunii HOM05D004523 ORTHO05D006021 5.3e-11 71.6 71 47.9
MCO09G275 Micromonas commoda HOM05D004523 ORTHO05D006021 1.2e-10 70.5 82 47.6
Cre17.g742200 Chlamydomonas reinhardtii HOM05D004523 ORTHO05D006021 1.7e-09 66.6 81 42.0
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 2.7e-07 59.3 126 32.5
BolC8t49617H Brassica oleracea HOM05D004523 ORTHO05D006021 3.5e-07 58.9 48 60.4
A06p16090 Brassica napus HOM05D004523 ORTHO05D006021 1.0e-06 57.4 42 66.7
BcaB07g32007 Brassica carinata HOM05D004523 ORTHO05D006021 1.7e-06 56.6 41 63.4


User provided reference genes

Program Settings