Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 3.5e-89 331.6 175 100.0
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.2e-81 306.6 194 87.6
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 3.2e-74 282.0 193 78.2
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 1.3e-70 270.0 195 76.4
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 3.7e-70 268.5 187 78.1
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.8e-69 266.2 190 74.2
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 2.4e-69 265.8 195 75.4
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.0e-68 262.7 186 76.3
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.8e-67 258.5 190 74.7
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 6.5e-67 257.7 190 76.3
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 1.1e-66 256.9 195 72.8
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 1.5e-66 256.5 193 72.5
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 1.5e-66 256.5 193 72.5
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 1.5e-66 256.5 193 72.5
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 4.2e-66 255.0 188 73.9
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 9.4e-66 253.8 201 71.1
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 9.4e-66 253.8 193 71.5
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 9.4e-66 253.8 190 72.6
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 6.1e-65 251.1 188 73.9
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 8.0e-65 250.8 189 73.0
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 8.0e-65 250.8 190 72.1
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.0e-64 250.4 191 72.3
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 1.0e-64 250.4 189 73.0
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 1.4e-64 250.0 193 70.5
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.8e-64 249.6 191 72.3
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.8e-64 249.6 191 72.3
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 2.3e-64 249.2 189 72.0
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 3.0e-64 248.8 190 73.2
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 3.9e-64 248.4 191 71.7
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 3.9e-64 248.4 193 71.0
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 8.8e-64 247.3 198 70.7
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 8.8e-64 247.3 198 71.7
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 8.8e-64 247.3 190 72.1
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 8.8e-64 247.3 190 72.1
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.1e-63 246.9 198 71.2
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.1e-63 246.9 198 71.2
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.1e-63 246.9 193 71.0
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 1.1e-63 246.9 190 71.6
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 2.0e-63 246.1 190 72.6
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 2.0e-63 246.1 197 70.6
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 2.0e-63 246.1 187 72.2
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 2.6e-63 245.7 197 70.6
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 2.6e-63 245.7 190 71.1
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 3.3e-63 245.4 187 72.2
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 3.3e-63 245.4 190 71.6
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 4.4e-63 245.0 188 71.3
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 4.4e-63 245.0 190 72.1
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 5.7e-63 244.6 179 72.6
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 5.7e-63 244.6 198 70.2
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 5.7e-63 244.6 190 71.1
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 7.4e-63 244.2 197 70.1
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 7.4e-63 244.2 194 71.1
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 7.4e-63 244.2 185 70.8
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 7.4e-63 244.2 197 70.1
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 7.4e-63 244.2 192 70.3
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 9.7e-63 243.8 187 72.2
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 9.7e-63 243.8 187 71.7
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 9.7e-63 243.8 185 72.4
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 9.7e-63 243.8 187 71.7
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.3e-62 243.4 198 70.7
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 1.3e-62 243.4 193 70.5
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 1.7e-62 243.0 187 71.7
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 2.2e-62 242.7 191 70.7
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 2.8e-62 242.3 191 71.2
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.8e-62 242.3 187 71.7
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 2.8e-62 242.3 179 72.6
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 3.7e-62 241.9 198 70.2
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 3.7e-62 241.9 198 70.2
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 3.7e-62 241.9 187 70.1
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 3.7e-62 241.9 187 71.1
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 4.8e-62 241.5 187 70.6
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 6.3e-62 241.1 187 71.1
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 6.3e-62 241.1 197 69.5
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 1.1e-61 240.4 193 68.9
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 1.1e-61 240.4 182 70.9
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 1.4e-61 240.0 198 69.7
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.4e-61 240.0 199 69.3
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 1.4e-61 240.0 188 71.3
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 1.4e-61 240.0 188 71.3
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 1.4e-61 240.0 187 70.1
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 1.8e-61 239.6 185 70.3
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.8e-61 239.6 190 70.0
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 3.1e-61 238.8 190 69.5
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 3.1e-61 238.8 198 69.2
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 3.1e-61 238.8 185 70.3
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 4.1e-61 238.4 189 69.3
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 7.0e-61 237.7 188 70.2
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 7.0e-61 237.7 188 70.7
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 9.1e-61 237.3 187 69.5
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 9.1e-61 237.3 187 69.5
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 2.0e-60 236.1 192 65.1
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 2.6e-60 235.7 189 70.4
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 7.7e-60 234.2 180 70.6
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 1.0e-59 233.8 198 66.7
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 1.3e-59 233.4 190 68.9
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 9.4e-58 227.3 171 70.2
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 1.4e-56 223.4 175 70.3
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 4.0e-56 221.9 197 61.9
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 3.4e-55 218.8 185 61.6
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 3.7e-54 215.3 184 65.2
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 6.3e-54 214.5 186 63.4
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 2.0e-52 209.5 196 59.2
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 2.0e-52 209.5 198 59.1
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 8.5e-51 204.1 179 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 7.2e-50 201.1 186 57.5
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 7.2e-50 201.1 206 54.9
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 4.4e-47 191.8 179 54.7
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 4.4e-47 191.8 125 81.6
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 4.9e-46 188.3 179 56.4
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.7e-43 179.9 193 56.5
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 1.1e-42 177.2 128 75.8
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 4.2e-42 175.3 189 58.2
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 1.2e-39 167.2 158 59.5
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.5e-39 166.8 197 53.8
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 2.6e-39 166.0 127 71.7
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 9.8e-39 164.1 96 82.3
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.7e-36 156.0 167 57.5
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.4e-32 143.7 117 70.1
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 8.3e-30 134.4 114 64.0
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 7.8e-28 127.9 121 59.5
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 1.6e-25 120.2 163 39.3
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 7.1e-21 104.8 76 68.4
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 1.9e-18 96.7 135 48.9
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 1.2e-17 94.0 100 53.0
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 1.8e-16 90.1 100 51.0
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 1.5e-15 87.0 171 33.9
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 2.0e-15 86.7 45 88.9
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 2.2e-14 83.2 75 60.0
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 1.2e-12 77.4 158 31.0
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 1.7e-11 73.6 64 57.8
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 6.6e-11 71.6 63 65.1
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.8e-08 63.5 66 56.1


User provided reference genes

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