Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0075101 Helianthus annuus HOM05D000626 ORTHO05D003868 5.0e-73 277.7 144 100.0
HanXRQChr06g0170541 Helianthus annuus HOM05D000626 ORTHO05D003868 3.9e-41 171.8 97 89.7
HanXRQChr15g0487501 Helianthus annuus HOM05D000626 ORTHO05D003868 3.1e-38 162.2 87 96.6
ECA232G3839 Erigeron canadensis HOM05D000626 ORTHO05D003868 3.5e-34 148.7 87 87.4
TAR628G0085 Trochodendron aralioides HOM05D000626 ORTHO05D003868 6.6e-33 144.4 87 85.1
Potri.007G031000 Populus trichocarpa HOM05D000626 ORTHO05D003868 4.3e-32 141.7 87 79.3
Sabra07G0026800 Salix brachista HOM05D000626 ORTHO05D003868 4.3e-32 141.7 88 79.5
Glyma.11G120300 Glycine max HOM05D000626 ORTHO05D003868 5.6e-32 141.4 87 79.3
Prupe.8G102600 Prunus persica HOM05D000626 ORTHO05D003868 9.5e-32 140.6 87 79.3
Glyma.12G045400 Glycine max HOM05D000626 ORTHO05D003868 1.2e-31 140.2 87 78.2
Duzib264G0072 Durio zibethinus HOM05D000626 ORTHO05D003868 1.6e-31 139.8 100 70.0
Dinv39947 Davidia involucrata HOM05D000626 ORTHO05D003868 2.1e-31 139.4 87 80.5
MD05G1070400 Malus domestica HOM05D000626 ORTHO05D003868 2.1e-31 139.4 87 78.2
MD10G1081300 Malus domestica HOM05D000626 ORTHO05D003868 2.1e-31 139.4 87 78.2
Manes.13G136200 Manihot esculenta HOM05D000626 ORTHO05D003868 2.1e-31 139.4 100 73.0
TAR376G0372 Trochodendron aralioides HOM05D000626 ORTHO05D003868 2.1e-31 139.4 87 82.8
Thecc.01G041600 Theobroma cacao HOM05D000626 ORTHO05D003868 2.8e-31 139.0 100 70.0
Cpa.g.sc158.17 Carica papaya HOM05D000626 ORTHO05D003868 3.6e-31 138.7 87 75.9
DCAR_017221 Daucus carota HOM05D000626 ORTHO05D003868 3.6e-31 138.7 87 81.6
Phvul.011G047300 Phaseolus vulgaris HOM05D000626 ORTHO05D003868 3.6e-31 138.7 87 77.0
Gohir.A13G048600 Gossypium hirsutum HOM05D000626 ORTHO05D003868 4.7e-31 138.3 88 76.1
Nn5g29507 Nelumbo nucifera HOM05D000626 ORTHO05D003868 4.7e-31 138.3 87 80.5
Oeu035116.1 Olea europaea HOM05D000626 ORTHO05D003868 4.7e-31 138.3 87 79.3
TPR.G28529 Trifolium pratense HOM05D000626 ORTHO05D003868 4.7e-31 138.3 87 79.3
GSVIVG01019024001 Vitis vinifera HOM05D000626 ORTHO05D003868 4.7e-31 138.3 87 80.5
Atru.chr3.513 Acer truncatum HOM05D000626 ORTHO05D003868 6.2e-31 137.9 87 79.3
SalBow5G3169 Salvia bowleyana HOM05D000626 ORTHO05D003868 6.2e-31 137.9 87 79.3
CiPaw.05G061300 Carya illinoinensis HOM05D000626 ORTHO05D003868 8.1e-31 137.5 100 71.0
Gorai.013G052700 Gossypium raimondii HOM05D000626 ORTHO05D003868 1.1e-30 137.1 87 77.0
Potri.005G127000 Populus trichocarpa HOM05D000626 ORTHO05D003868 1.1e-30 137.1 87 77.0
QL11p042537 Quercus lobata HOM05D000626 ORTHO05D003868 1.1e-30 137.1 89 75.3
RcHm_v2.0_Chr6g0262991 Rosa chinensis HOM05D000626 ORTHO05D003868 1.1e-30 137.1 92 73.9
Duzib147G0490 Durio zibethinus HOM05D000626 ORTHO05D003868 1.4e-30 136.7 88 78.4
Thecc.02G122300 Theobroma cacao HOM05D000626 ORTHO05D003868 1.4e-30 136.7 87 75.9
VMungo1127G0953 Vigna mungo HOM05D000626 ORTHO05D003868 1.8e-30 136.3 87 77.0
Gohir.A04G117400 Gossypium hirsutum HOM05D000626 ORTHO05D003868 2.4e-30 136.0 100 68.0
Gohir.D04G159100 Gossypium hirsutum HOM05D000626 ORTHO05D003868 2.4e-30 136.0 100 68.0
Gorai.012G146500 Gossypium raimondii HOM05D000626 ORTHO05D003868 2.4e-30 136.0 100 68.0
Duzib132G0298 Durio zibethinus HOM05D000626 ORTHO05D003868 3.1e-30 135.6 87 75.9
Gohir.D13G047000 Gossypium hirsutum HOM05D000626 ORTHO05D003868 3.1e-30 135.6 87 74.7
Lj3g0026150 Lotus japonicus HOM05D000626 ORTHO05D003868 3.1e-30 135.6 87 78.2
Hma1.2p1_0066F.1_g036710 Hydrangea macrophylla HOM05D000626 ORTHO05D003868 4.0e-30 135.2 87 77.0
Lsat_1_v5_gn_4_144441 Lactuca sativa HOM05D000626 ORTHO05D003868 4.0e-30 135.2 78 87.2
Oeu032561.1 Olea europaea HOM05D000626 ORTHO05D003868 4.0e-30 135.2 87 77.0
Psat7g141000 Pisum sativum HOM05D000626 ORTHO05D003868 4.0e-30 135.2 87 77.0
SGA_v2.0_scaffold276G46656 Striga asiatica HOM05D000626 ORTHO05D003868 4.0e-30 135.2 87 75.9
Peaxi162Scf00684g00567 Petunia axillaris HOM05D000626 ORTHO05D003868 5.2e-30 134.8 87 78.2
THA.LOC104826869 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 5.2e-30 134.8 87 77.0
ClCG09G017810 Citrullus lanatus HOM05D000626 ORTHO05D003868 6.8e-30 134.4 87 77.0
Haze_02415 Corylus avellana HOM05D000626 ORTHO05D003868 8.9e-30 134.0 89 74.2
Lalb_Chr01g0002691 Lupinus albus HOM05D000626 ORTHO05D003868 8.9e-30 134.0 87 75.9
Medtr4g069240 Medicago truncatula HOM05D000626 ORTHO05D003868 8.9e-30 134.0 87 77.0
Actinidia00502 Actinidia chinensis HOM05D000626 ORTHO05D003868 1.2e-29 133.7 87 75.9
Eucgr.G01893 Eucalyptus grandis HOM05D000626 ORTHO05D003868 1.2e-29 133.7 87 78.2
Prupe.7G148700 Prunus persica HOM05D000626 ORTHO05D003868 1.2e-29 133.7 100 69.0
Ciclev10028484m.g Citrus clementina HOM05D000626 ORTHO05D003868 1.5e-29 133.3 87 73.6
Cc07_g09070 Coffea canephora HOM05D000626 ORTHO05D003868 1.5e-29 133.3 87 77.0
MELO3C021946.2 Cucumis melo HOM05D000626 ORTHO05D003868 1.5e-29 133.3 87 75.9
CsaV3_2G014400 Cucumis sativus L. HOM05D000626 ORTHO05D003868 1.5e-29 133.3 87 75.9
Nitab4.5_0000336g0150 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.5e-29 133.3 98 70.4
TWI09G1554 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 1.5e-29 133.3 100 70.0
GSVIVG01031917001 Vitis vinifera HOM05D000626 ORTHO05D003868 1.5e-29 133.3 87 74.7
Lj5C200G5 Lonicera japonica HOM05D000626 ORTHO05D003868 2.0e-29 132.9 87 75.9
Sed0005165 Sechium edule HOM05D000626 ORTHO05D003868 2.0e-29 132.9 87 74.7
COL.COLO4_32455 Corchorus olitorius HOM05D000626 ORTHO05D003868 3.4e-29 132.1 86 76.7
FvH4_2g08200 Fragaria vesca HOM05D000626 ORTHO05D003868 3.4e-29 132.1 87 74.7
Manes.12G098300 Manihot esculenta HOM05D000626 ORTHO05D003868 3.4e-29 132.1 100 69.0
SGA_v2.0_scaffold33G13424 Striga asiatica HOM05D000626 ORTHO05D003868 3.4e-29 132.1 87 74.7
ATR0733G160 Amborella trichopoda HOM05D000626 ORTHO05D003868 4.4e-29 131.7 87 72.4
Aqoxy5G01696 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 4.4e-29 131.7 87 74.7
TWI31G0747 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 4.4e-29 131.7 87 75.9
HPP92_010187 Vanilla planifolia HOM05D000626 ORTHO05D003868 4.4e-29 131.7 87 75.9
Lalb_Chr03g0025801 Lupinus albus HOM05D000626 ORTHO05D003868 5.8e-29 131.3 87 73.6
Nitab4.5_0000199g0010 Nicotiana tabacum HOM05D000626 ORTHO05D003868 5.8e-29 131.3 87 74.7
Actinidia36541 Actinidia chinensis HOM05D000626 ORTHO05D003868 7.6e-29 131.0 87 73.6
unitig_37.g12815 Utricularia gibba HOM05D000626 ORTHO05D003868 7.6e-29 131.0 87 74.7
TWI53G0930 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 9.9e-29 130.6 100 68.0
CDE01G0575 Ceratophyllum demersum HOM05D000626 ORTHO05D003868 1.7e-28 129.8 87 73.6
Migut.H00194 Erythranthe guttata HOM05D000626 ORTHO05D003868 1.7e-28 129.8 87 73.6
Sed0006655 Sechium edule HOM05D000626 ORTHO05D003868 1.7e-28 129.8 86 73.3
Solyc01g109410.4 Solanum lycopersicum HOM05D000626 ORTHO05D003868 1.7e-28 129.8 86 76.7
MSTRG.23557 Avicennia marina HOM05D000626 ORTHO05D003868 2.2e-28 129.4 86 76.7
Duzib052G0942 Durio zibethinus HOM05D000626 ORTHO05D003868 2.9e-28 129.0 87 71.3
PSO541G5997 Papaver somniferum HOM05D000626 ORTHO05D003868 2.9e-28 129.0 99 68.7
PSO675G2926 Papaver somniferum HOM05D000626 ORTHO05D003868 2.9e-28 129.0 99 68.7
Sc18g0004660 Simmondsia chinensis HOM05D000626 ORTHO05D003868 2.9e-28 129.0 87 71.3
Cpa.g.sc62.112 Carica papaya HOM05D000626 ORTHO05D003868 3.8e-28 128.6 87 72.4
HanXRQChr05g0134001 Helianthus annuus HOM05D000626 ORTHO05D003868 3.8e-28 128.6 66 98.5
Sopen01g051600 Solanum pennellii HOM05D000626 ORTHO05D003868 3.8e-28 128.6 86 75.6
THA.LOC104819216 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 3.8e-28 128.6 87 73.6
CSS0006874 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 4.9e-28 128.3 87 71.3
COL.COLO4_22139 Corchorus olitorius HOM05D000626 ORTHO05D003868 6.4e-28 127.9 91 71.4
PGR042G1683 Punica granatum HOM05D000626 ORTHO05D003868 8.4e-28 127.5 87 71.3
Aqoxy6G01025 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 1.1e-27 127.1 87 72.4
Lj4C195G12 Lonicera japonica HOM05D000626 ORTHO05D003868 1.1e-27 127.1 86 75.6
CAN.G322.113 Capsicum annuum HOM05D000626 ORTHO05D003868 1.4e-27 126.7 86 74.4
MD15G1269000 Malus domestica HOM05D000626 ORTHO05D003868 1.9e-27 126.3 100 66.0
SEGI_04451 Sequoiadendron giganteum HOM05D000626 ORTHO05D003868 1.9e-27 126.3 88 71.6
BcaB02g10001 Brassica carinata HOM05D000626 ORTHO05D003868 2.4e-27 125.9 87 70.1
Nitab4.5_0008989g0040 Nicotiana tabacum HOM05D000626 ORTHO05D003868 2.4e-27 125.9 100 65.0
Sp2g30020 Schrenkiella parvula HOM05D000626 ORTHO05D003868 2.4e-27 125.9 87 69.0
AL8G44800 Arabidopsis lyrata HOM05D000626 ORTHO05D003868 3.2e-27 125.6 86 70.9
AT5G66680 Arabidopsis thaliana HOM05D000626 ORTHO05D003868 3.2e-27 125.6 87 70.1
BcaB04g20111 Brassica carinata HOM05D000626 ORTHO05D003868 3.2e-27 125.6 87 70.1
CARHR281040 Cardamine hirsuta HOM05D000626 ORTHO05D003868 3.2e-27 125.6 86 70.9
Nitab4.5_0001794g0020 Nicotiana tabacum HOM05D000626 ORTHO05D003868 3.2e-27 125.6 100 65.0
Zm00001eb303200 Zea mays HOM05D000626 ORTHO05D003868 7.1e-27 124.4 87 71.3
MSTRG.16792 Avicennia marina HOM05D000626 ORTHO05D003868 9.2e-27 124.0 100 61.0
Thhalv10004242m.g Eutrema salsugineum HOM05D000626 ORTHO05D003868 9.2e-27 124.0 87 69.0
Lj2C447T14 Lonicera japonica HOM05D000626 ORTHO05D003868 9.2e-27 124.0 84 78.6
SalBow6G3366 Salvia bowleyana HOM05D000626 ORTHO05D003868 9.2e-27 124.0 100 64.0
SGA_v2.0_scaffold58G20567 Striga asiatica HOM05D000626 ORTHO05D003868 9.2e-27 124.0 100 61.0
arahy.Tifrunner.gnm1.ann1.GNS53T Arachis hypogaea HOM05D000626 ORTHO05D003868 1.2e-26 123.6 78 78.2
Cc02_g17860 Coffea canephora HOM05D000626 ORTHO05D003868 1.2e-26 123.6 87 69.0
Aa31LG1G15220 Aethionema arabicum HOM05D000626 ORTHO05D003868 1.6e-26 123.2 87 70.1
arahy.Tifrunner.gnm1.ann1.NL7PFA Arachis hypogaea HOM05D000626 ORTHO05D003868 1.6e-26 123.2 78 78.2
FAN20G2380 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.6e-26 123.2 78 76.9
Manes.15G148600 Manihot esculenta HOM05D000626 ORTHO05D003868 1.6e-26 123.2 86 70.9
BcaC06g34731 Brassica carinata HOM05D000626 ORTHO05D003868 2.1e-26 122.9 87 69.0
C07p25140 Brassica napus HOM05D000626 ORTHO05D003868 2.1e-26 122.9 87 69.0
BolC7t43044H Brassica oleracea HOM05D000626 ORTHO05D003868 2.1e-26 122.9 87 69.0
BolC9t54060H Brassica oleracea HOM05D000626 ORTHO05D003868 2.7e-26 122.5 87 71.3
BraA09t36632Z Brassica rapa HOM05D000626 ORTHO05D003868 2.7e-26 122.5 87 71.3
Ca_20850_v3 Cicer arietinum L. HOM05D000626 ORTHO05D003868 2.7e-26 122.5 86 73.3
vmacro02136 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 2.7e-26 122.5 87 67.8
BcaC04g23148 Brassica carinata HOM05D000626 ORTHO05D003868 6.0e-26 121.3 87 70.1
BraA07t29454Z Brassica rapa HOM05D000626 ORTHO05D003868 6.0e-26 121.3 87 67.8
CANSAT01G0918 Cannabis sativa HOM05D000626 ORTHO05D003868 6.0e-26 121.3 87 70.1
Carub.0008s2782 Capsella rubella HOM05D000626 ORTHO05D003868 6.0e-26 121.3 86 68.6
A09p09850 Brassica napus HOM05D000626 ORTHO05D003868 7.8e-26 120.9 87 70.1
Atru.chr5.2949 Acer truncatum HOM05D000626 ORTHO05D003868 1.3e-25 120.2 87 67.8
C09p11660 Brassica napus HOM05D000626 ORTHO05D003868 1.3e-25 120.2 87 69.0
Hund14135 Selenicereus undatus HOM05D000626 ORTHO05D003868 8.7e-25 117.5 98 61.2
CSS0002315 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 1.5e-24 116.7 98 61.2
EL10Ac6g14893 Beta vulgaris HOM05D000626 ORTHO05D003868 4.3e-24 115.2 98 61.2
Hund06221 Selenicereus undatus HOM05D000626 ORTHO05D003868 4.3e-24 115.2 78 70.5
EL10Ac9g21756 Beta vulgaris HOM05D000626 ORTHO05D003868 7.3e-24 114.4 78 71.8
CSS0013243 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 7.3e-24 114.4 118 55.9
AUR62008017 Chenopodium quinoa HOM05D000626 ORTHO05D003868 9.6e-24 114.0 98 60.2
FAN27G0454 Fragaria x ananassa HOM05D000626 ORTHO05D003868 9.6e-24 114.0 91 65.9
MD12G1035200 Malus domestica HOM05D000626 ORTHO05D003868 9.6e-24 114.0 87 63.2
AUR62003200 Chenopodium quinoa HOM05D000626 ORTHO05D003868 1.2e-23 113.6 98 59.2
FAN15G2364 Fragaria x ananassa HOM05D000626 ORTHO05D003868 2.8e-23 112.5 91 64.8
A07p17280 Brassica napus HOM05D000626 ORTHO05D003868 3.6e-23 112.1 87 65.5
Duzib251G0751 Durio zibethinus HOM05D000626 ORTHO05D003868 4.7e-23 111.7 101 56.4
CSS0014885 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 4.0e-22 108.6 70 77.1
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 5.2e-22 108.2 123 50.4
vmacro23069 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 5.2e-22 108.2 78 65.4
Actinidia25417 Actinidia chinensis HOM05D000626 ORTHO05D003868 1.2e-21 107.1 70 74.3
Mapoly0103s0006 Marchantia polymorpha HOM05D000626 ORTHO05D003868 9.9e-21 104.0 86 62.8
AUR62011357 Chenopodium quinoa HOM05D000626 ORTHO05D003868 2.2e-20 102.8 71 70.4
FAN24G1839 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.1e-19 100.5 121 48.8
AagrBONN_evm.TU.Sc2ySwM_117.2383 Anthoceros agrestis HOM05D000626 ORTHO05D003868 1.9e-19 99.8 87 62.1
Pp3c24_6930 Physcomitrium patens HOM05D000626 ORTHO05D003868 3.2e-19 99.0 86 59.3
Zm00001eb095330 Zea mays HOM05D000626 ORTHO05D003868 2.1e-18 96.3 68 70.6
CSS0037823 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 2.3e-17 92.8 65 67.7
Peaxi162Scf00016g00944 Petunia axillaris HOM05D000626 ORTHO05D003868 3.0e-17 92.4 80 63.8
SGA_v2.0_scaffold31G12912 Striga asiatica HOM05D000626 ORTHO05D003868 8.7e-17 90.9 89 56.2
SMO358G0537 Selaginella moellendorffii HOM05D000626 ORTHO05D003868 1.9e-16 89.7 86 54.7
CBR_g28880 Chara braunii HOM05D000626 ORTHO05D003868 2.5e-16 89.4 85 48.2
BcaB07g29659 Brassica carinata HOM05D000626 ORTHO05D003868 5.6e-16 88.2 87 54.0
HPP92_010240 Vanilla planifolia HOM05D000626 ORTHO05D003868 1.3e-15 87.0 59 72.9
Dinv26800 Davidia involucrata HOM05D000626 ORTHO05D003868 6.2e-15 84.7 51 80.4
SGA_v2.0_scaffold146G36209 Striga asiatica HOM05D000626 ORTHO05D003868 6.4e-12 74.7 87 49.4
Cfa019187 Carpinus fangiana HOM05D003289 ORTHO05D034141 1.0e-09 67.4 46 69.6
Cre14.g614100 Chlamydomonas reinhardtii HOM05D000626 ORTHO05D003868 4.3e-08 62.0 82 41.5
Hma1.2p1_0829F.1_g225220 Hydrangea macrophylla HOM05D000626 ORTHO05D003868 1.1e-06 57.4 53 58.5
AUR62016705 Chenopodium quinoa HOM05D000626 ORTHO05D003868 3.1e-06 55.8 35 68.6
Ah.03g139660 Amaranthus hybridus HOM05D000626 ORTHO05D003868 9.0e-06 54.3 45 57.8


User provided reference genes

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