Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 4.1e-168 594.7 318 100.0
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 2.0e-167 592.4 318 99.7
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 1.4e-160 569.7 318 94.7
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 6.9e-107 391.3 318 65.1
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 6.4e-105 384.8 319 63.9
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 9.3e-104 380.9 318 64.5
HanXRQChr03g0074181 Helianthus annuus HOM05D012567 ORTHO05D004696 3.0e-102 375.9 238 86.6
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 1.6e-100 370.2 313 64.5
Lsat_1_v5_gn_7_52601 Lactuca sativa HOM05D012567 ORTHO05D004696 2.2e-73 280.0 319 49.8
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 5.5e-72 275.4 247 57.9
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 2.5e-69 266.5 312 49.4
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 2.7e-42 176.8 312 35.9
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 7.7e-42 175.3 312 35.3
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.9e-34 149.1 321 36.1
Cc06_g13850 Coffea canephora HOM05D012567 ORTHO05D004696 5.2e-30 136.0 300 31.0
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.6e-26 124.4 308 29.2
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.6e-26 124.4 308 29.5
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.6e-26 124.4 307 29.0
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.0e-26 124.0 298 31.5
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.3e-25 121.3 296 28.4
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-24 118.2 325 30.2
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.5e-24 117.9 300 29.0
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.5e-24 117.9 305 31.5
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.9e-24 117.5 292 29.5
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.8e-23 113.6 307 28.0
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 6.8e-22 109.0 306 32.0
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.5e-21 107.8 303 27.4
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.7e-20 104.4 301 24.9
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 1.9e-19 100.9 298 27.2
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.2e-19 100.1 310 28.1
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 5.4e-19 99.4 290 25.2
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 5.4e-19 99.4 294 31.0
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 4.6e-18 96.3 290 29.3
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 4.6e-18 96.3 308 27.6
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.0e-17 95.1 298 28.9
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 1.0e-17 95.1 312 30.1
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.0e-17 95.1 229 31.0
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.0e-17 95.1 317 30.3
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 1.3e-17 94.7 303 29.7
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 5.0e-17 92.8 302 26.8
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 1.1e-16 91.7 294 27.9
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.9e-16 90.9 298 28.5
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 1.9e-16 90.9 300 25.3
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.5e-16 90.5 297 27.9
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 2.5e-16 90.5 293 29.7
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 4.3e-16 89.7 300 26.7
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 4.3e-16 89.7 293 25.9
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 4.3e-16 89.7 294 28.9
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.3e-16 89.7 234 29.9
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.3e-16 89.7 289 26.3
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 7.3e-16 89.0 289 26.3
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 9.5e-16 88.6 296 27.4
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 1.2e-15 88.2 299 30.1
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.2e-15 88.2 309 28.2
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 2.1e-15 87.4 294 24.8
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 3.6e-15 86.7 313 29.1
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 6.2e-15 85.9 296 25.7
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 6.2e-15 85.9 302 27.8
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 8.0e-15 85.5 304 27.0
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 8.0e-15 85.5 297 26.6
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 8.0e-15 85.5 300 26.3
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 8.0e-15 85.5 300 26.3
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.4e-14 84.7 295 25.1
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 2.3e-14 84.0 293 27.6
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 4.0e-14 83.2 297 26.3
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 4.0e-14 83.2 294 27.9
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 4.0e-14 83.2 307 26.7
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 5.2e-14 82.8 293 25.6
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 5.2e-14 82.8 313 27.8
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 6.8e-14 82.4 298 25.2
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 1.5e-13 81.3 297 29.6
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 2.0e-13 80.9 305 26.2
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 3.4e-13 80.1 297 26.9
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 4.4e-13 79.7 224 29.0
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 7.5e-13 79.0 287 27.2
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 9.8e-13 78.6 290 26.6
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 9.8e-13 78.6 299 26.8
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 1.7e-12 77.8 297 29.0
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 1.7e-12 77.8 297 29.0
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 2.2e-12 77.4 294 25.9
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 2.9e-12 77.0 280 28.6
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 3.7e-12 76.6 295 25.1
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 3.7e-12 76.6 286 25.5
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 3.7e-12 76.6 302 27.2
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.9e-12 76.3 318 26.7
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 4.9e-12 76.3 296 27.0
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 8.3e-12 75.5 296 27.7
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 8.3e-12 75.5 291 25.4
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 8.3e-12 75.5 287 26.5
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 1.1e-11 75.1 292 26.7
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-11 75.1 292 26.7
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 1.9e-11 74.3 286 24.8
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 2.4e-11 73.9 292 26.7
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 2.4e-11 73.9 295 24.1
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 2.4e-11 73.9 292 26.7
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.4e-11 73.9 230 30.4
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 4.1e-11 73.2 302 24.5
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 5.4e-11 72.8 297 26.6
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 5.4e-11 72.8 282 24.5
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 5.4e-11 72.8 282 24.5
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 5.4e-11 72.8 282 25.9
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 9.2e-11 72.0 292 26.4
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.6e-10 71.2 302 24.2
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 2.1e-10 70.9 207 30.9
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 2.1e-10 70.9 238 28.2
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 2.7e-10 70.5 283 23.7
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 4.6e-10 69.7 289 24.6
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.8e-10 68.9 211 26.1
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 1.3e-09 68.2 289 24.9
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 1.3e-09 68.2 289 24.2
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 1.3e-09 68.2 289 24.2
SalBow6G6841 Salvia bowleyana HOM05D015143 ORTHO05D004696 2.3e-09 67.4 323 24.5
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 2.3e-09 67.4 217 29.5
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 3.9e-09 66.6 213 26.8
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 3.9e-09 66.6 213 26.8
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 3.9e-09 66.6 206 29.1
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 6.6e-09 65.9 301 24.3
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 1.1e-08 65.1 294 25.5
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 1.5e-08 64.7 212 25.9
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.5e-08 64.7 278 24.5
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.5e-08 64.7 278 24.5
TAR626G0474 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.5e-08 64.7 139 33.1
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.9e-08 64.3 301 24.6
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 2.5e-08 63.9 196 29.1
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 2.5e-08 63.9 274 25.5
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 2.5e-08 63.9 288 25.7
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 2.5e-08 63.9 196 27.0
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 3.3e-08 63.5 291 27.1
Gohir.D05G242200 Gossypium hirsutum HOM05D001062 ORTHO05D000884 5.6e-08 62.8 327 27.8
Oeu033667.1 Olea europaea HOM05D001062 ORTHO05D000884 7.3e-08 62.4 345 24.3
COL.COLO4_35751 Corchorus olitorius HOM05D001062 ORTHO05D000884 1.2e-07 61.6 332 26.5
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 1.2e-07 61.6 315 23.8
Migut.J01429 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.2e-07 61.6 292 25.3
SalBow6G3434 Salvia bowleyana HOM05D015143 ORTHO05D004696 1.2e-07 61.6 314 24.8
Atru.chr4.912 Acer truncatum HOM05D001062 ORTHO05D000884 1.6e-07 61.2 302 26.8
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 2.1e-07 60.8 272 25.7
Nn3g16144 Nelumbo nucifera HOM05D001062 ORTHO05D000884 2.8e-07 60.5 317 27.1
Nn3g17062 Nelumbo nucifera HOM05D001062 ORTHO05D000884 2.8e-07 60.5 317 27.1
Lj1g0013489 Lotus japonicus HOM05D001062 ORTHO05D000884 3.6e-07 60.1 306 25.2
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.7e-07 59.7 210 28.6
Aqoxy7G03202 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 6.2e-07 59.3 323 20.7
SalBow6G3435 Salvia bowleyana HOM05D001062 ORTHO05D000884 6.2e-07 59.3 311 27.0
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 8.1e-07 58.9 291 23.0
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 8.1e-07 58.9 219 26.5
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-06 58.5 286 24.8
CSS0019658 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.4e-06 58.2 303 22.4
Atru.chr4.907 Acer truncatum HOM05D001062 ORTHO05D000884 2.3e-06 57.4 319 25.4
CSS0021222 Camellia sinensis var. sinensis HOM05D001062 ORTHO05D000884 2.3e-06 57.4 336 25.6
CSS0049252 Camellia sinensis var. sinensis HOM05D001062 ORTHO05D000884 2.3e-06 57.4 331 26.0
CiPaw.16G018900 Carya illinoinensis HOM05D001062 ORTHO05D000884 2.3e-06 57.4 331 25.1
CDE04G1275 Ceratophyllum demersum HOM05D000122 ORTHO05D000139 2.3e-06 57.4 300 23.7
Eucgr.F04013 Eucalyptus grandis HOM05D004960 ORTHO05D004696 2.3e-06 57.4 298 21.1
Gohir.D06G197200 Gossypium hirsutum HOM05D001062 ORTHO05D000884 2.3e-06 57.4 329 27.7
HanXRQChr05g0160811 Helianthus annuus HOM05D001062 ORTHO05D000884 2.3e-06 57.4 299 24.7
Sc06g0003000 Simmondsia chinensis HOM05D001062 ORTHO05D000884 2.3e-06 57.4 322 26.1
Gohir.D05G242050 Gossypium hirsutum HOM05D001062 ORTHO05D000884 3.1e-06 57.0 347 24.5
Lsat_1_v5_gn_6_97761 Lactuca sativa HOM05D001062 ORTHO05D000884 3.1e-06 57.0 309 25.2
PSO541G5342 Papaver somniferum HOM05D001062 ORTHO05D000884 3.1e-06 57.0 339 25.7
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 3.1e-06 57.0 112 37.5
Lsat_1_v5_gn_5_30680 Lactuca sativa HOM05D001062 ORTHO05D000884 4.0e-06 56.6 335 24.8
MBI14_g30691_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.0e-06 56.6 288 24.0
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.2e-06 56.2 292 22.3
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 6.8e-06 55.8 281 24.6
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 6.8e-06 55.8 210 23.3
Cfa018388 Carpinus fangiana HOM05D001062 ORTHO05D000884 8.9e-06 55.5 332 25.0
MELO3C030213.2 Cucumis melo HOM05D001062 ORTHO05D000884 8.9e-06 55.5 243 26.3
MBI14_g30699_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 8.9e-06 55.5 297 25.3


User provided reference genes

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