Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 7.3e-113 410.6 213 100.0
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 2.5e-68 262.7 210 64.3
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 7.2e-68 261.2 201 69.2
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.4e-63 246.9 210 61.0
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 2.6e-62 242.7 210 60.0
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 3.0e-58 229.2 203 58.6
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.1e-57 227.3 205 57.1
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.3e-56 223.8 203 57.1
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 2.2e-56 223.0 205 57.6
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 2.2e-56 223.0 205 57.6
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.8e-56 222.6 194 57.2
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 8.2e-56 221.1 203 56.2
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-55 220.3 207 57.0
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-55 220.3 207 57.0
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.8e-55 219.9 185 58.9
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 2.4e-55 219.5 203 56.2
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 4.1e-55 218.8 203 55.2
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 7.0e-55 218.0 191 59.7
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 9.1e-55 217.6 186 59.1
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.6e-54 216.9 199 58.3
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 3.5e-54 215.7 202 56.4
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 3.8e-53 212.2 203 56.7
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 6.5e-53 211.5 207 55.1
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 8.5e-53 211.1 207 54.6
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.5e-52 210.3 207 56.0
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 2.5e-52 209.5 215 50.7
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 3.2e-52 209.1 207 54.1
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 9.4e-52 207.6 184 57.6
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.2e-51 207.2 203 53.7
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.6e-51 206.8 216 51.9
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 2.1e-51 206.5 203 53.2
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 2.1e-51 206.5 199 53.3
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 2.7e-51 206.1 218 52.8
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 3.6e-51 205.7 205 54.1
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 4.7e-51 205.3 199 51.3
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 4.7e-51 205.3 207 53.6
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 6.1e-51 204.9 201 51.2
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.0e-50 204.1 203 55.2
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.4e-50 203.8 210 50.5
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.8e-50 203.4 207 52.2
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 2.3e-50 203.0 202 53.5
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.3e-50 203.0 207 51.2
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 1.5e-49 200.3 185 57.3
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.5e-49 200.3 190 53.2
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 2.0e-49 199.9 208 48.6
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.6e-49 199.5 189 52.4
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 4.4e-49 198.7 203 51.7
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.7e-49 198.4 207 49.8
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 7.5e-49 198.0 194 54.1
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 9.7e-49 197.6 153 62.1
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.7e-48 196.8 199 51.8
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 6.3e-48 194.9 203 49.3
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 6.3e-48 194.9 203 50.7
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 6.3e-48 194.9 212 48.6
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 8.2e-48 194.5 181 52.5
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 1.4e-47 193.7 201 48.8
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.8e-47 193.4 207 52.2
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 2.4e-47 193.0 207 50.7
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 7.0e-47 191.4 202 50.5
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.2e-46 190.7 202 48.5
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.2e-46 190.7 203 51.2
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.6e-46 190.3 179 53.6
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 3.5e-46 189.1 202 50.0
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 4.5e-46 188.7 183 51.9
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 1.0e-45 187.6 206 48.5
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.7e-45 186.8 205 50.2
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 2.2e-45 186.4 202 48.0
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 2.9e-45 186.0 145 62.8
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 5.0e-45 185.3 203 49.3
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 8.5e-45 184.5 186 52.7
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.5e-44 183.0 205 49.3
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.5e-44 183.0 205 49.3
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 4.2e-44 182.2 153 57.5
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 5.5e-44 181.8 207 45.4
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 7.2e-44 181.4 213 48.4
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.2e-43 180.6 200 47.0
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 1.6e-43 180.3 202 49.0
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 2.7e-43 179.5 191 50.8
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 6.1e-43 178.3 216 46.8
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 6.1e-43 178.3 210 47.6
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 1.0e-42 177.6 205 48.3
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.0e-42 177.6 205 48.3
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.4e-42 177.2 202 48.0
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 3.0e-42 176.0 210 46.2
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 4.0e-42 175.6 202 47.0
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 5.2e-42 175.3 206 45.6
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.5e-41 173.7 153 56.2
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.3e-40 170.6 202 47.5
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.3e-40 170.6 203 45.3
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.7e-40 170.2 208 46.6
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 8.3e-40 167.9 183 49.7
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.1e-39 167.5 210 45.2
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 1.4e-39 167.2 183 48.6
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 5.4e-39 165.2 176 48.3
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 2.7e-38 162.9 203 45.3
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 2.7e-38 162.9 174 50.0
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 2.2e-37 159.8 193 47.2
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.2e-37 159.8 190 45.3
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 2.9e-37 159.5 205 43.9
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.1e-36 157.5 172 49.4
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.1e-36 157.5 190 45.8
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.1e-36 157.5 190 45.8
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 1.1e-36 157.5 190 44.7
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.5e-36 157.1 207 44.9
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.5e-36 157.1 202 44.1
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.5e-36 156.4 190 44.2
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.1e-35 153.3 211 38.9
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.1e-35 153.3 190 44.2
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.6e-35 152.5 211 38.9
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 3.6e-35 152.5 207 41.5
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 3.0e-34 149.4 162 46.9
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.0e-34 149.4 204 42.6
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.2e-33 147.5 194 42.8
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.2e-33 147.5 194 42.8
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.2e-33 147.5 194 42.8
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.5e-33 147.1 104 64.4
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.3e-32 144.1 203 40.9
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.8e-32 142.9 191 41.9
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 6.3e-32 141.7 202 40.1
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 6.3e-32 141.7 202 40.1
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 6.3e-32 141.7 202 40.1
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 8.3e-32 141.4 200 42.0
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.1e-31 139.0 203 39.9
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 4.1e-31 139.0 203 39.9
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.2e-30 137.5 193 39.4
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 1.2e-30 137.5 152 45.4
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 2.0e-30 136.7 136 54.4
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 4.5e-30 135.6 202 39.1
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 5.9e-30 135.2 200 39.0
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 1.0e-29 134.4 200 38.5
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.7e-29 133.7 193 39.9
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 5.0e-29 132.1 177 44.6
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.5e-28 129.8 175 41.7
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 4.3e-28 129.0 194 38.7
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 4.3e-28 129.0 202 38.1
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.1e-27 126.7 200 37.5
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.8e-27 126.3 201 36.8
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.8e-27 126.3 201 36.8
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 3.6e-27 125.9 194 37.1
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 4.7e-27 125.6 203 37.9
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 8.0e-27 124.8 213 34.3
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.0e-26 124.4 190 36.8
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.8e-26 123.6 202 37.1
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.8e-26 123.6 194 37.1
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 5.2e-26 122.1 195 36.9
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.5e-25 120.6 194 36.1
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.6e-25 119.8 192 38.5
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.6e-25 119.8 192 38.5
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 3.4e-25 119.4 152 42.8
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 7.5e-25 118.2 184 38.0
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.3e-24 117.5 200 37.5
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.3e-24 117.5 194 35.1
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 7.0e-23 111.7 185 37.8
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 5.9e-22 108.6 195 33.8
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.7e-21 107.1 160 35.6
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 4.3e-20 102.4 152 41.4
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 3.6e-19 99.4 191 33.0
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.4e-18 97.4 160 34.4
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.3e-18 96.7 127 49.6
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 6.4e-16 88.6 90 56.7
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 5.6e-12 75.5 91 42.9
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-11 74.3 58 70.7
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.2e-11 74.3 75 53.3
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 3.6e-11 72.8 201 26.4
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 4.0e-10 69.3 59 61.0
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 5.2e-10 68.9 154 29.2
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.9e-08 63.2 67 55.2


User provided reference genes

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