Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 4.2e-259 897.5 451 100.0
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 1.3e-241 839.3 451 94.9
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 7.0e-182 641.0 463 73.2
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 6.4e-159 564.7 475 64.8
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 9.3e-158 560.8 473 64.7
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 4.6e-157 558.5 474 63.7
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 1.7e-156 556.6 473 63.2
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 3.0e-156 555.8 473 64.1
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 1.1e-155 553.9 481 63.2
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 1.3e-154 550.4 476 64.5
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 4.8e-154 548.5 461 63.8
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 1.4e-153 547.0 475 62.1
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.8e-153 546.6 477 62.5
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 5.3e-153 545.0 485 64.9
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 5.3e-153 545.0 481 63.0
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 6.9e-153 544.7 479 62.4
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.2e-152 543.9 477 61.2
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 4.5e-152 542.0 449 65.3
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 7.6e-152 541.2 475 63.8
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 1.3e-151 540.4 483 60.9
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 1.7e-151 540.0 470 63.0
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 4.9e-151 538.5 470 62.8
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 9.3e-150 534.3 512 59.6
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 3.5e-149 532.3 477 61.6
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 4.6e-149 531.9 481 62.0
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 2.3e-148 529.6 477 62.3
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 2.3e-148 529.6 474 60.8
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 8.7e-148 527.7 475 60.4
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 1.3e-146 523.9 472 62.3
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 2.8e-146 522.7 471 59.4
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 8.1e-146 521.2 474 59.9
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.4e-145 519.6 462 60.6
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 1.2e-144 517.3 462 63.0
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 3.4e-144 515.8 468 60.7
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 4.5e-144 515.4 472 60.4
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 1.3e-143 513.8 339 77.6
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 8.4e-143 511.1 472 60.8
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.9e-142 510.0 470 61.5
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 2.4e-142 509.6 469 59.7
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 2.4e-142 509.6 474 59.1
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 3.2e-142 509.2 381 69.0
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 4.2e-142 508.8 470 59.8
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 5.5e-142 508.4 495 56.8
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 5.5e-142 508.4 478 59.2
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 9.3e-142 507.7 464 59.3
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 9.3e-142 507.7 476 59.9
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 9.3e-142 507.7 464 59.1
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 9.3e-142 507.7 469 59.3
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 3.5e-141 505.8 340 75.9
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 3.5e-141 505.8 474 59.7
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 1.3e-140 503.8 468 59.4
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 5.1e-140 501.9 469 58.8
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 8.7e-140 501.1 473 57.9
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 1.1e-139 500.7 475 59.2
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 4.3e-139 498.8 477 58.3
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 2.1e-138 496.5 381 67.2
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.8e-138 496.1 340 75.3
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.7e-138 495.7 381 67.2
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 4.8e-138 495.4 476 58.8
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 1.8e-137 493.4 474 55.5
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 3.1e-137 492.7 477 57.4
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 5.3e-137 491.9 464 58.6
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 9.0e-137 491.1 335 73.4
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 1.5e-136 490.3 464 58.4
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 2.0e-136 490.0 439 61.7
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 2.6e-136 489.6 474 58.6
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.4e-136 489.2 471 57.5
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 4.5e-136 488.8 470 57.7
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 5.8e-136 488.4 471 55.4
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 1.0e-135 487.6 471 55.4
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.4e-134 483.8 472 55.9
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 2.5e-134 483.0 471 55.6
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 5.5e-134 481.9 474 55.7
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 3.5e-133 479.2 469 54.4
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 6.0e-133 478.4 462 57.6
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 1.9e-131 473.4 472 54.0
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 3.3e-131 472.6 474 56.1
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 3.3e-131 472.6 397 63.0
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 9.7e-131 471.1 473 55.4
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 1.4e-129 467.2 494 53.8
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 3.1e-129 466.1 478 54.8
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 9.0e-129 464.5 494 52.6
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 2.2e-127 459.9 487 54.4
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 6.5e-127 458.4 489 53.6
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 3.2e-126 456.1 335 71.3
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 4.2e-126 455.7 498 51.0
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 7.2e-126 454.9 401 61.6
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.1e-125 451.8 373 63.0
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.7e-119 433.7 477 52.0
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 6.5e-119 431.8 304 73.0
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 5.5e-118 428.7 477 51.8
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.1e-117 426.8 336 66.4
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 7.9e-117 424.9 483 49.7
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 8.2e-114 414.8 255 77.6
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 2.2e-111 406.8 394 59.6
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 8.8e-108 394.8 385 56.4
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 4.4e-107 392.5 495 45.9
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 5.7e-107 392.1 363 59.0
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-105 387.5 253 73.5
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 5.9e-104 382.1 255 69.8
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 2.1e-101 373.6 482 48.1
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.7e-96 356.7 254 69.3
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 6.5e-95 352.1 358 57.8
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 1.9e-94 350.5 339 54.0
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 1.2e-91 341.3 383 50.1
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 2.6e-91 340.1 381 48.0
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 7.5e-91 338.6 363 51.8
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.2e-90 337.0 372 53.2
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 2.0e-88 330.5 353 49.3
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 2.7e-88 330.1 300 61.3
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 4.5e-88 329.3 278 62.2
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 1.0e-84 318.2 242 63.6
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 4.9e-82 309.3 297 53.5
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 4.6e-72 276.2 355 48.2
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.0e-64 249.2 419 39.6
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.1e-61 238.8 368 42.1
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.7e-47 194.5 280 41.1
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 3.3e-46 190.3 163 62.0
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 2.8e-45 187.2 234 48.3
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.7e-39 167.9 242 44.6
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 1.2e-32 145.2 93 69.9
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 2.7e-32 144.1 122 61.5
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 6.0e-32 142.9 339 31.0
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 1.3e-26 125.2 216 44.0
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 6.5e-26 122.9 60 90.0
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 6.7e-23 112.8 135 51.9
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.3e-22 110.5 125 48.8
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 8.2e-21 105.9 187 34.2
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 2.4e-20 104.4 218 37.2
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 6.9e-20 102.8 147 46.3
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.5e-11 75.1 73 57.5
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 6.5e-10 69.7 232 31.5
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 6.7e-07 59.7 97 42.3


User provided reference genes

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