Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 4.5e-146 521.2 252 100.0
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 9.7e-72 274.2 220 66.8
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 2.1e-58 229.9 220 57.7
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 2.6e-56 223.0 227 55.5
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 6.3e-55 218.4 217 56.7
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.7e-52 210.3 222 56.3
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.7e-44 183.7 185 50.8
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.5e-43 180.6 188 49.5
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.5e-43 179.9 198 47.0
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 2.5e-43 179.9 189 48.1
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 5.5e-43 178.7 188 47.3
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.1e-42 176.8 181 50.8
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.7e-42 176.4 192 48.4
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 6.1e-42 175.3 189 46.0
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 8.0e-42 174.9 185 50.8
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.0e-41 174.5 189 46.6
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.4e-41 174.1 199 47.2
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.3e-41 173.3 181 50.3
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.5e-40 170.6 184 45.7
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 2.0e-40 170.2 194 47.4
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.4e-40 169.5 184 45.7
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 4.4e-40 169.1 200 46.0
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.7e-40 168.7 220 42.3
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 7.5e-40 168.3 179 49.7
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 1.7e-39 167.2 194 46.9
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 4.8e-39 165.6 217 44.7
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.8e-39 165.6 185 46.5
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 6.3e-39 165.2 194 45.9
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.1e-38 164.5 178 46.6
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.1e-38 164.5 181 47.0
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.4e-38 164.1 188 46.8
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.4e-38 164.1 193 49.7
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.8e-38 163.7 220 43.6
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.4e-38 163.3 185 48.1
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.4e-38 163.3 185 48.1
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.1e-38 162.9 183 47.0
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 7.0e-38 161.8 207 46.4
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 7.0e-38 161.8 211 44.5
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.2e-37 161.0 211 45.0
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.2e-37 161.0 211 45.5
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 2.7e-37 159.8 188 46.3
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 3.5e-37 159.5 180 46.7
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 5.9e-37 158.7 180 46.7
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 7.7e-37 158.3 217 40.6
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.0e-36 157.9 206 45.6
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.7e-36 157.1 183 49.2
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 1.7e-36 157.1 185 45.4
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.3e-36 156.8 198 46.5
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.3e-36 156.8 185 44.9
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.9e-36 156.4 194 45.9
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 5.0e-36 155.6 193 43.5
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 6.6e-36 155.2 213 40.4
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 8.6e-36 154.8 184 46.7
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.5e-35 154.1 211 44.5
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 2.5e-35 153.3 185 47.6
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 3.3e-35 152.9 184 48.4
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 4.2e-35 152.5 197 43.1
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 4.2e-35 152.5 211 43.1
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 4.2e-35 152.5 213 43.7
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.2e-34 151.0 184 46.7
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.6e-34 150.6 183 46.4
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.1e-34 150.2 190 44.2
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 2.1e-34 150.2 180 44.4
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.8e-34 149.8 189 44.4
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 2.8e-34 149.8 218 39.9
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 3.6e-34 149.4 190 45.3
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 4.7e-34 149.1 188 44.1
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 4.7e-34 149.1 194 43.8
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 4.7e-34 149.1 185 48.6
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.1e-34 148.7 205 44.4
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 6.1e-34 148.7 205 44.4
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 8.0e-34 148.3 219 39.7
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 8.0e-34 148.3 182 44.0
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.4e-33 147.5 185 45.9
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.4e-33 147.5 185 45.9
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.4e-33 147.5 188 46.8
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 2.3e-33 146.7 188 46.8
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.3e-33 146.7 222 41.4
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 3.0e-33 146.4 194 46.9
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 4.0e-33 146.0 183 44.3
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 6.8e-33 145.2 183 44.3
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 8.9e-33 144.8 186 44.1
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.2e-32 144.4 205 44.9
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.2e-32 144.4 182 44.5
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.2e-32 144.4 190 44.2
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.5e-32 144.1 211 40.3
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.0e-32 143.7 185 44.9
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.0e-32 143.7 185 44.9
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 2.0e-32 143.7 224 40.2
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 3.4e-32 142.9 187 42.8
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 3.4e-32 142.9 193 42.0
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 3.4e-32 142.9 193 42.0
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.7e-32 142.1 185 44.9
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.7e-32 142.1 185 44.3
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 7.5e-32 141.7 215 39.1
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 7.5e-32 141.7 182 45.6
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 9.8e-32 141.4 216 39.4
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.3e-31 141.0 217 38.2
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.7e-31 140.6 190 42.1
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.8e-31 139.8 180 45.6
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.7e-31 139.4 199 40.2
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 4.9e-31 139.0 207 40.6
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 8.3e-31 138.3 214 39.7
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.8e-30 137.1 180 45.0
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.8e-30 137.1 201 41.8
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 3.2e-30 136.3 198 41.4
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 4.1e-30 136.0 187 40.6
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 5.4e-30 135.6 214 40.2
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 9.2e-30 134.8 183 43.2
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 2.7e-29 133.3 215 39.5
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.7e-29 133.3 184 41.8
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 3.5e-29 132.9 201 38.3
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 7.8e-29 131.7 214 39.3
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 7.8e-29 131.7 141 46.1
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.7e-28 130.6 181 40.3
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 6.6e-28 128.6 181 41.4
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 8.6e-28 128.3 217 40.1
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 8.6e-28 128.3 215 40.0
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.3e-27 125.9 181 42.0
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 5.6e-27 125.6 214 40.2
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 5.6e-27 125.6 214 40.2
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 7.3e-27 125.2 209 37.3
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 7.3e-27 125.2 177 41.8
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 3.6e-26 122.9 214 39.7
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 6.1e-26 122.1 172 42.4
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 6.1e-26 122.1 222 38.3
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.4e-25 120.9 181 40.3
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.1e-25 119.8 195 36.4
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.2e-24 117.9 176 40.9
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.0e-24 117.1 116 53.4
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 2.6e-24 116.7 151 44.4
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.4e-24 116.3 205 35.1
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 9.8e-24 114.8 140 43.6
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.7e-23 114.0 234 35.5
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.7e-23 114.0 120 49.2
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.1e-22 111.3 154 42.2
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.4e-22 110.2 225 33.8
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.2e-21 107.8 228 32.9
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.3e-20 104.4 143 44.8
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.3e-20 104.4 117 51.3
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 5.0e-20 102.4 137 43.1
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 4.3e-19 99.4 109 47.7
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 3.6e-18 96.3 117 43.6
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.3e-17 93.6 160 39.4
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.3e-17 93.6 207 30.4
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 2.0e-16 90.5 110 43.6
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.4e-16 89.4 174 35.6
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 7.5e-16 88.6 109 45.0
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 4.9e-15 85.9 133 40.6
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 4.9e-15 85.9 157 36.9
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.9e-14 84.0 89 44.9
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 8.6e-12 75.1 161 32.9
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 9.5e-11 71.6 190 31.1
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.3e-09 67.0 152 30.3
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.2e-07 60.5 185 29.7
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 3.7e-07 59.7 57 57.9
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.1e-06 58.2 96 38.5
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 3.2e-06 56.6 42 66.7


User provided reference genes

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