Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0071161 Helianthus annuus HOM05D006051 ORTHO05D026343 5.7e-56 220.7 114 100.0
Lsat_1_v5_gn_8_11321 Lactuca sativa HOM05D006051 ORTHO05D008120 2.6e-48 195.3 103 96.1
ECA233G2097 Erigeron canadensis HOM05D006051 ORTHO05D008120 4.4e-48 194.5 103 95.1
HanXRQChr08g0221681 Helianthus annuus HOM05D006051 ORTHO05D008120 7.5e-48 193.7 106 94.3
MSTRG.8386 Avicennia marina HOM05D006051 ORTHO05D008120 1.1e-43 179.9 103 86.4
Atru.chr1.411 Acer truncatum HOM05D006051 ORTHO05D008120 1.5e-43 179.5 103 86.4
Migut.F01226 Erythranthe guttata HOM05D006051 ORTHO05D008120 1.9e-43 179.1 103 84.5
Hma1.2p1_0264F.1_g105860 Hydrangea macrophylla HOM05D006051 ORTHO05D008120 1.9e-43 179.1 103 85.4
Nitab4.5_0000094g0030 Nicotiana tabacum HOM05D006051 ORTHO05D008120 3.3e-43 178.3 103 84.5
Solyc06g048540.3 Solanum lycopersicum HOM05D006051 ORTHO05D008120 3.3e-43 178.3 103 84.5
Sopen06g014710 Solanum pennellii HOM05D006051 ORTHO05D008120 3.3e-43 178.3 103 84.5
PGSC0003DMG400027595 Solanum tuberosum HOM05D006051 ORTHO05D008120 3.3e-43 178.3 103 84.5
MSTRG.157 Avicennia marina HOM05D006051 ORTHO05D008120 4.3e-43 177.9 103 83.5
Nitab4.5_0012485g0010 Nicotiana tabacum HOM05D006051 ORTHO05D008120 4.3e-43 177.9 103 83.5
SGA_v2.0_scaffold42G16175 Striga asiatica HOM05D006051 ORTHO05D008120 4.3e-43 177.9 103 83.5
Gohir.D05G287000 Gossypium hirsutum HOM05D006051 ORTHO05D008120 9.5e-43 176.8 103 84.5
Gorai.009G302000 Gossypium raimondii HOM05D006051 ORTHO05D008120 9.5e-43 176.8 103 84.5
Cc02_g05120 Coffea canephora HOM05D006051 ORTHO05D008120 2.1e-42 175.6 103 84.5
Oeu039396.1 Olea europaea HOM05D006051 ORTHO05D008120 2.8e-42 175.3 103 84.5
SGA_v2.0_scaffold121G33040 Striga asiatica HOM05D000250 ORTHO05D000625 2.8e-42 175.3 103 82.5
GSVIVG01036588001 Vitis vinifera HOM05D006051 ORTHO05D008120 2.8e-42 175.3 103 80.6
vmacro06909 Vaccinium macrocarpon HOM05D006051 ORTHO05D008120 3.6e-42 174.9 101 84.2
Gohir.A05G285900 Gossypium hirsutum HOM05D006051 ORTHO05D008120 4.7e-42 174.5 103 83.5
DCAR_018048 Daucus carota HOM05D006051 ORTHO05D008120 6.2e-42 174.1 103 84.5
TAR636G2651 Trochodendron aralioides HOM05D006051 ORTHO05D008120 6.2e-42 174.1 103 79.6
Actinidia13633 Actinidia chinensis HOM05D006051 ORTHO05D008120 8.1e-42 173.7 103 83.5
CSS0033370 Camellia sinensis var. sinensis HOM05D006051 ORTHO05D008120 8.1e-42 173.7 103 81.6
Peaxi162Scf00304g00081 Petunia axillaris HOM05D006051 ORTHO05D008120 8.1e-42 173.7 100 86.0
Dinv34507 Davidia involucrata HOM05D006051 ORTHO05D008120 1.1e-41 173.3 103 80.6
Actinidia31641 Actinidia chinensis HOM05D006051 ORTHO05D008120 1.4e-41 172.9 100 86.0
COL.COLO4_16345 Corchorus olitorius HOM05D006051 ORTHO05D008120 1.8e-41 172.6 103 83.5
MD07G1059800 Malus domestica HOM05D006051 ORTHO05D008120 1.8e-41 172.6 100 87.0
QL04p049349 Quercus lobata HOM05D006051 ORTHO05D008120 1.8e-41 172.6 103 81.6
CAN.G174.7 Capsicum annuum HOM05D006051 ORTHO05D008120 2.3e-41 172.2 103 82.5
Manes.07G077300 Manihot esculenta HOM05D006051 ORTHO05D008120 2.3e-41 172.2 103 80.6
Thecc.10G124400 Theobroma cacao HOM05D006051 ORTHO05D008120 2.3e-41 172.2 103 82.5
Ciclev10015923m.g Citrus clementina HOM05D006051 ORTHO05D008120 4.0e-41 171.4 103 80.6
CsaV3_1G031660 Cucumis sativus L. HOM05D006051 ORTHO05D008120 5.2e-41 171.0 103 80.6
Sabra08G0007800 Salix brachista HOM05D006051 ORTHO05D008120 5.2e-41 171.0 103 79.6
SalBow4G2472 Salvia bowleyana HOM05D006051 ORTHO05D008120 5.2e-41 171.0 101 84.2
unitig_0.g263 Utricularia gibba HOM05D006051 ORTHO05D008120 5.2e-41 171.0 103 79.6
Cpa.g.sc33.112 Carica papaya HOM05D006051 ORTHO05D008120 8.9e-41 170.2 103 81.6
Actinidia01012 Actinidia chinensis HOM05D006051 ORTHO05D008120 1.2e-40 169.9 103 80.6
ClCG06G013410 Citrullus lanatus HOM05D006051 ORTHO05D008120 1.2e-40 169.9 103 80.6
Duzib128G1182 Durio zibethinus HOM05D006051 ORTHO05D008120 1.2e-40 169.9 103 81.6
Potri.008G012500 Populus trichocarpa HOM05D006051 ORTHO05D008120 1.5e-40 169.5 103 79.6
C03p44320 Brassica napus HOM05D000059 ORTHO05D017557 2.0e-40 169.1 103 79.6
BolC3t16702H Brassica oleracea HOM05D000059 ORTHO05D017557 2.0e-40 169.1 103 79.6
MELO3C017456.2 Cucumis melo HOM05D006051 ORTHO05D008120 2.6e-40 168.7 103 79.6
Eucgr.J00305 Eucalyptus grandis HOM05D006051 ORTHO05D008120 2.6e-40 168.7 103 78.6
Hund06815 Selenicereus undatus HOM05D006051 ORTHO05D008120 3.4e-40 168.3 103 77.7
Ah.06g191760 Amaranthus hybridus HOM05D001282 ORTHO05D008120 4.4e-40 167.9 103 77.7
AL3G22140 Arabidopsis lyrata HOM05D006051 ORTHO05D008120 5.8e-40 167.5 103 79.6
AT3G10670 Arabidopsis thaliana HOM05D006051 ORTHO05D008120 5.8e-40 167.5 103 79.6
A03p36690 Brassica napus HOM05D006051 ORTHO05D008120 5.8e-40 167.5 103 79.6
A05p38510 Brassica napus HOM05D000059 ORTHO05D017557 5.8e-40 167.5 103 79.6
C05p57410 Brassica napus HOM05D000059 ORTHO05D017557 5.8e-40 167.5 103 79.6
BolC5t34397H Brassica oleracea HOM05D000059 ORTHO05D017557 5.8e-40 167.5 103 79.6
BraA03t12832Z Brassica rapa HOM05D000059 ORTHO05D017557 5.8e-40 167.5 103 79.6
BraA05t22642Z Brassica rapa HOM05D000059 ORTHO05D017557 5.8e-40 167.5 103 79.6
Carub.0003s0990 Capsella rubella HOM05D006051 ORTHO05D008120 5.8e-40 167.5 103 79.6
CARHR085250 Cardamine hirsuta HOM05D006051 ORTHO05D008120 5.8e-40 167.5 103 79.6
Thhalv10021097m.g Eutrema salsugineum HOM05D006051 ORTHO05D008120 5.8e-40 167.5 103 79.6
Sed0004519 Sechium edule HOM05D006051 ORTHO05D008120 5.8e-40 167.5 103 78.6
Nitab4.5_0009756g0020 Nicotiana tabacum HOM05D006051 ORTHO05D008120 7.5e-40 167.2 103 80.6
Aa31LG3G3530 Aethionema arabicum HOM05D006051 ORTHO05D008120 1.3e-39 166.4 103 78.6
TWI15G0662 Tripterygium wilfordii HOM05D006051 ORTHO05D008120 1.7e-39 166.0 103 77.7
RcHm_v2.0_Chr6g0244501 Rosa chinensis HOM05D006051 ORTHO05D008120 2.9e-39 165.2 101 80.2
FAN22G1693 Fragaria x ananassa HOM05D006051 ORTHO05D008120 3.7e-39 164.9 101 80.2
EL10Ac4g08746 Beta vulgaris HOM05D006051 ORTHO05D008120 4.9e-39 164.5 103 75.7
Haze_03422 Corylus avellana HOM05D006051 ORTHO05D008120 4.9e-39 164.5 103 77.7
CiPaw.13G045900 Carya illinoinensis HOM05D006051 ORTHO05D008120 6.4e-39 164.1 103 76.7
Cfa010484 Carpinus fangiana HOM05D006051 ORTHO05D008120 8.3e-39 163.7 103 77.7
AUR62014283 Chenopodium quinoa HOM05D006051 ORTHO05D008120 8.3e-39 163.7 103 75.7
Sp3g08990 Schrenkiella parvula HOM05D006051 ORTHO05D008120 8.3e-39 163.7 103 78.6
PGR044G2135 Punica granatum HOM05D006051 ORTHO05D008120 1.4e-38 162.9 103 75.7
FvH4_4g11580 Fragaria vesca HOM05D006051 ORTHO05D008120 1.9e-38 162.5 101 79.2
FAN04G2808 Fragaria x ananassa HOM05D006051 ORTHO05D008120 1.9e-38 162.5 101 79.2
FAN12G2513 Fragaria x ananassa HOM05D006051 ORTHO05D008120 1.9e-38 162.5 101 79.2
FAN12G2962 Fragaria x ananassa HOM05D006051 ORTHO05D008120 1.9e-38 162.5 101 79.2
FAN17G1686 Fragaria x ananassa HOM05D006051 ORTHO05D008120 1.9e-38 162.5 101 79.2
Ah.04g163060 Amaranthus hybridus HOM05D006051 ORTHO05D008120 2.4e-38 162.2 100 78.0
BcaC05g29439 Brassica carinata HOM05D000059 ORTHO05D017557 2.4e-38 162.2 100 80.0
FAN07G0692 Fragaria x ananassa HOM05D006051 ORTHO05D008120 2.4e-38 162.2 101 78.2
SEGI_02248 Sequoiadendron giganteum HOM05D006051 ORTHO05D008120 2.4e-38 162.2 103 76.7
AUR62034153 Chenopodium quinoa HOM05D006051 ORTHO05D008120 3.2e-38 161.8 103 74.8
Nn5g26807 Nelumbo nucifera HOM05D006051 ORTHO05D008120 4.1e-38 161.4 103 74.8
MBI01_g45162_MAGBIO Magnolia biondii HOM05D006051 ORTHO05D008120 5.4e-38 161.0 103 75.7
Lj1A969G90 Lonicera japonica HOM05D006051 ORTHO05D008120 7.1e-38 160.6 104 78.8
Lalb_Chr09g0331911 Lupinus albus HOM05D006051 ORTHO05D008120 1.6e-37 159.5 103 73.8
CDE07G1672 Ceratophyllum demersum HOM05D006051 ORTHO05D008120 2.1e-37 159.1 104 71.2
Sc09g0004830 Simmondsia chinensis HOM05D006051 ORTHO05D008120 2.1e-37 159.1 103 73.8
AagrBONN_evm.TU.Sc2ySwM_344.3763 Anthoceros agrestis HOM05D006051 ORTHO05D008120 2.7e-37 158.7 103 75.7
Lalb_Chr05g0223721 Lupinus albus HOM05D006051 ORTHO05D008120 2.7e-37 158.7 103 73.8
Medtr8g101390 Medicago truncatula HOM05D006051 ORTHO05D008120 3.5e-37 158.3 103 71.8
Psat7g021440 Pisum sativum HOM05D006051 ORTHO05D008120 3.5e-37 158.3 103 71.8
Ca_17412_v3 Cicer arietinum L. HOM05D006051 ORTHO05D008120 4.6e-37 157.9 103 71.8
Phvul.002G303300 Phaseolus vulgaris HOM05D006051 ORTHO05D008120 4.6e-37 157.9 103 71.8
TPR.G25446 Trifolium pratense HOM05D006051 ORTHO05D008120 4.6e-37 157.9 103 71.8
Glyma.08G028100 Glycine max HOM05D006051 ORTHO05D008120 1.7e-36 156.0 110 67.3
THA.LOC104816479 Tarenaya hassleriana HOM05D006051 ORTHO05D008120 1.7e-36 156.0 102 74.5
Cre07.g339700 Chlamydomonas reinhardtii HOM05D006051 ORTHO05D008120 3.0e-36 155.2 103 72.8
CiPaw.14G036600 Carya illinoinensis HOM05D006051 ORTHO05D008120 3.9e-36 154.8 103 71.8
CDE06G2681 Ceratophyllum demersum HOM05D006051 ORTHO05D008120 3.9e-36 154.8 101 72.3
VMungo0251G0556 Vigna mungo HOM05D006051 ORTHO05D008120 3.9e-36 154.8 103 70.9
arahy.Tifrunner.gnm1.ann1.CDC39Z Arachis hypogaea HOM05D006051 ORTHO05D008120 5.1e-36 154.5 103 69.9
Glyma.05G221600 Glycine max HOM05D006051 ORTHO05D008120 5.1e-36 154.5 103 69.9
Aqoxy2G00667 Aquilegia oxysepala HOM05D006051 ORTHO05D008120 6.6e-36 154.1 103 73.8
arahy.Tifrunner.gnm1.ann1.LULC1Z Arachis hypogaea HOM05D006051 ORTHO05D008120 6.6e-36 154.1 103 69.9
PSO170G3597 Papaver somniferum HOM05D006051 ORTHO05D008120 6.6e-36 154.1 103 72.8
PSO339G3490 Papaver somniferum HOM05D006051 ORTHO05D008120 6.6e-36 154.1 103 72.8
PSO384G3752 Papaver somniferum HOM05D006051 ORTHO05D008120 6.6e-36 154.1 103 72.8
ATR1127G151 Amborella trichopoda HOM05D006051 ORTHO05D008120 3.3e-35 151.8 103 71.8
PRCOL_00003471 Prasinoderma coloniale HOM05D006051 ORTHO05D008120 4.3e-35 151.4 103 70.9
Mapoly0065s0083 Marchantia polymorpha HOM05D006051 ORTHO05D008120 5.6e-35 151.0 103 71.8
TAR633G1896 Trochodendron aralioides HOM05D006051 ORTHO05D008120 2.8e-34 148.7 94 76.6
HPP92_012571 Vanilla planifolia HOM05D006051 ORTHO05D008120 2.8e-34 148.7 103 69.9
Zm00001eb015880 Zea mays HOM05D006051 ORTHO05D008120 3.6e-34 148.3 103 68.0
MD02G1261200 Malus domestica HOM05D006051 ORTHO05D008120 6.2e-34 147.5 155 54.8
SMO304G0032 Selaginella moellendorffii HOM05D006051 ORTHO05D008120 8.1e-34 147.1 103 68.9
CBR_g26048 Chara braunii HOM05D006051 ORTHO05D008120 5.2e-33 144.4 103 66.0
Hund22261 Selenicereus undatus HOM05D006051 ORTHO05D008120 3.4e-32 141.7 93 75.3
Pp3c17_22300 Physcomitrium patens HOM05D006051 ORTHO05D008120 7.6e-32 140.6 103 66.0
Os03g0332700 Oryza sativa ssp. japonica HOM05D006051 ORTHO05D008120 3.8e-31 138.3 103 65.0
MCO01G258 Micromonas commoda HOM05D006051 ORTHO05D008120 2.4e-30 135.6 103 63.1
QL04p049282 Quercus lobata HOM05D006051 ORTHO05D026343 3.0e-28 128.6 85 78.8
Lj4g0006181 Lotus japonicus HOM05D006051 ORTHO05D008120 5.1e-28 127.9 102 60.8
Atru.chr4.1039 Acer truncatum HOM05D006051 ORTHO05D052196 3.2e-22 108.6 66 81.8
Ca_29450_v3 Cicer arietinum L. HOM05D006051 ORTHO05D008120 1.6e-21 106.3 100 49.0
Aqoxy2G00665 Aquilegia oxysepala HOM05D006051 ORTHO05D008120 6.0e-21 104.4 81 69.1
Nitab4.5_0000171g0370 Nicotiana tabacum HOM05D001426 ORTHO05D001389 2.1e-18 95.9 71 73.2
Haze_26808 Corylus avellana HOM05D006051 ORTHO05D008120 2.8e-18 95.5 95 52.6
HPP92_012540 Vanilla planifolia HOM05D006051 ORTHO05D008120 2.6e-16 89.0 72 62.5
Pp3c2_1340 Physcomitrium patens HOM05D006051 ORTHO05D008120 5.8e-08 61.2 41 65.9


User provided reference genes

Program Settings