Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0070901 Helianthus annuus HOM05D002160 ORTHO05D002012 1.4e-27 125.9 72 100.0
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 2.8e-12 75.1 69 71.0
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 6.9e-11 70.5 69 65.2
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.2e-10 69.7 69 56.5
ECA240G1164 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.2e-10 69.7 72 69.4
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.2e-10 69.7 67 65.7
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 2.0e-10 68.9 67 65.7
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.4e-10 68.2 75 64.0
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 3.4e-10 68.2 67 67.2
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 5.8e-10 67.4 68 66.2
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 5.8e-10 67.4 67 65.7
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 7.6e-10 67.0 67 67.2
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 7.6e-10 67.0 68 67.6
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 1.0e-09 66.6 68 64.7
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 1.0e-09 66.6 67 64.2
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.3e-09 66.2 68 66.2
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 1.3e-09 66.2 67 62.7
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.7e-09 65.9 68 64.7
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.7e-09 65.9 67 70.1
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 1.7e-09 65.9 67 62.7
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 2.2e-09 65.5 67 65.7
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 2.2e-09 65.5 67 65.7
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.2e-09 65.5 67 68.7
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 2.9e-09 65.1 68 66.2
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 3.8e-09 64.7 67 64.2
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 3.8e-09 64.7 67 67.2
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 5.0e-09 64.3 68 63.2
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 5.0e-09 64.3 68 66.2
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 5.0e-09 64.3 68 50.0
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 5.0e-09 64.3 68 50.0
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 5.0e-09 64.3 68 63.2
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 5.0e-09 64.3 67 64.2
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 5.0e-09 64.3 67 62.7
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 6.5e-09 63.9 68 50.0
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 6.5e-09 63.9 68 50.0
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 6.5e-09 63.9 68 50.0
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 6.5e-09 63.9 68 50.0
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 6.5e-09 63.9 68 50.0
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 6.5e-09 63.9 67 67.2
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 8.4e-09 63.5 68 50.0
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 8.4e-09 63.5 68 47.1
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 8.4e-09 63.5 67 58.2
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 8.4e-09 63.5 67 65.7
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.1e-08 63.2 68 48.5
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.1e-08 63.2 68 48.5
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.1e-08 63.2 67 67.2
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 1.1e-08 63.2 67 67.2
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 1.4e-08 62.8 68 64.7
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 1.4e-08 62.8 68 64.7
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.9e-08 62.4 71 60.6
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.9e-08 62.4 71 60.6
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 1.9e-08 62.4 68 64.7
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 1.9e-08 62.4 68 64.7
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.9e-08 62.4 67 62.7
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.9e-08 62.4 67 65.7
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 1.9e-08 62.4 67 59.7
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 1.9e-08 62.4 68 50.0
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.9e-08 62.4 76 56.6
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 2.5e-08 62.0 68 63.2
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 3.2e-08 61.6 67 61.2
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 4.2e-08 61.2 67 62.7
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.2e-08 61.2 67 62.7
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 4.2e-08 61.2 68 63.2
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 4.2e-08 61.2 75 62.7
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 5.5e-08 60.8 68 63.2
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 5.5e-08 60.8 68 63.2
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 5.5e-08 60.8 68 48.5
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 5.5e-08 60.8 75 61.3
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 5.5e-08 60.8 67 64.2
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 7.1e-08 60.5 68 48.5
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 7.1e-08 60.5 76 61.8
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 7.1e-08 60.5 76 61.8
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 7.1e-08 60.5 76 61.8
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 9.3e-08 60.1 68 63.2
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 9.3e-08 60.1 68 47.1
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 9.3e-08 60.1 68 47.1
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 9.3e-08 60.1 68 47.1
BraA02t04716Z Brassica rapa HOM05D002160 ORTHO05D002012 9.3e-08 60.1 68 47.1
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 9.3e-08 60.1 67 65.7
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.2e-07 59.7 67 65.7
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 1.6e-07 59.3 67 64.2
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 2.1e-07 58.9 68 60.3
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 2.1e-07 58.9 68 63.2
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.7e-07 58.5 74 59.5
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.7e-07 58.5 70 62.9
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 3.5e-07 58.2 74 59.5
vmacro20155 Vaccinium macrocarpon HOM05D002160 ORTHO05D002012 3.5e-07 58.2 48 79.2
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 6.1e-07 57.4 68 60.3
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.9e-07 57.0 71 63.4
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 7.9e-07 57.0 68 60.3
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 7.9e-07 57.0 67 61.2
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 1.0e-06 56.6 69 59.4
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.3e-06 56.2 67 61.2
PGSC0003DMG401008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.8e-06 55.8 68 66.2
TWI53G0132 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.3e-06 55.5 70 41.4
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 8.7e-06 53.5 67 53.7
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 8.7e-06 53.5 70 50.0


User provided reference genes

Program Settings