Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0070711 Helianthus annuus HOM05D002200 ORTHO05D002294 3.3e-36 154.5 75 100.0
HanXRQChr02g0037431 Helianthus annuus HOM05D002200 ORTHO05D002294 1.1e-23 112.8 77 75.3
HanXRQChr13g0411211 Helianthus annuus HOM05D002200 ORTHO05D002294 1.4e-23 112.5 58 93.1
ECA240G2040 Erigeron canadensis HOM05D002200 ORTHO05D002294 1.7e-16 89.0 58 74.1
Lsat_1_v5_gn_5_56820 Lactuca sativa HOM05D002200 ORTHO05D002294 1.0e-13 79.7 66 60.6
Dinv44378 Davidia involucrata HOM05D002200 ORTHO05D002294 2.3e-13 78.6 58 63.8
Cpa.g.sc16.175 Carica papaya HOM05D002200 ORTHO05D002294 5.2e-13 77.4 61 59.0
Lj6A676T60 Lonicera japonica HOM05D002200 ORTHO05D002294 6.8e-13 77.0 57 63.2
CSS0038505 Camellia sinensis var. sinensis HOM05D002200 ORTHO05D002294 8.8e-13 76.6 57 59.6
COL.COLO4_13865 Corchorus olitorius HOM05D002200 ORTHO05D002294 1.5e-12 75.9 63 58.7
MD16G1168400 Malus domestica HOM05D002200 ORTHO05D002294 2.6e-12 75.1 58 62.1
Oeu029704.1 Olea europaea HOM05D002200 ORTHO05D002294 3.4e-12 74.7 60 53.3
Actinidia14300 Actinidia chinensis HOM05D002200 ORTHO05D002294 7.5e-12 73.6 57 57.9
MD13G1168000 Malus domestica HOM05D002200 ORTHO05D002294 7.5e-12 73.6 58 60.3
Duzib151G0840 Durio zibethinus HOM05D002200 ORTHO05D002294 1.3e-11 72.8 57 61.4
RcHm_v2.0_Chr4g0422361 Rosa chinensis HOM05D002200 ORTHO05D002294 2.8e-11 71.6 57 59.6
SalBow2G2737 Salvia bowleyana HOM05D002200 ORTHO05D002294 2.8e-11 71.6 58 62.1
Prupe.1G135600 Prunus persica HOM05D002200 ORTHO05D002294 3.7e-11 71.2 59 59.3
Ca_01935_v3 Cicer arietinum L. HOM05D002200 ORTHO05D002294 4.8e-11 70.9 58 53.4
DCAR_030528 Daucus carota HOM05D002200 ORTHO05D002294 4.8e-11 70.9 57 54.4
Gohir.A09G238700 Gossypium hirsutum HOM05D002200 ORTHO05D002294 6.3e-11 70.5 61 57.4
Manes.03G195700 Manihot esculenta HOM05D002200 ORTHO05D002294 8.3e-11 70.1 57 57.9
Medtr2g436750 Medicago truncatula HOM05D002200 ORTHO05D002294 1.1e-10 69.7 58 51.7
Cc03_g01860 Coffea canephora HOM05D002200 ORTHO05D002294 1.4e-10 69.3 57 57.9
Dinv29745 Davidia involucrata HOM05D002200 ORTHO05D002294 1.4e-10 69.3 62 54.8
TPR.G23007 Trifolium pratense HOM05D002200 ORTHO05D002294 1.4e-10 69.3 58 51.7
vmacro15233 Vaccinium macrocarpon HOM05D002200 ORTHO05D002294 1.4e-10 69.3 57 54.4
FAN17G2603 Fragaria x ananassa HOM05D002200 ORTHO05D002294 1.8e-10 68.9 57 54.4
Glyma.09G044600 Glycine max HOM05D002200 ORTHO05D002294 1.8e-10 68.9 58 55.2
Thecc.04G285200 Theobroma cacao HOM05D002200 ORTHO05D002294 1.8e-10 68.9 57 59.6
Glyma.15G148300 Glycine max HOM05D002200 ORTHO05D002294 3.1e-10 68.2 58 56.9
Gohir.A02G049500 Gossypium hirsutum HOM05D002200 ORTHO05D002294 4.1e-10 67.8 63 52.4
Gohir.D09G239600 Gossypium hirsutum HOM05D002200 ORTHO05D002294 4.1e-10 67.8 61 54.1
Gorai.006G262400 Gossypium raimondii HOM05D002200 ORTHO05D002294 4.1e-10 67.8 61 54.1
Gohir.D02G054600 Gossypium hirsutum HOM05D002200 ORTHO05D002294 5.3e-10 67.4 63 52.4
Gorai.005G060500 Gossypium raimondii HOM05D002200 ORTHO05D002294 5.3e-10 67.4 63 52.4
Psat1g153960 Pisum sativum HOM05D002200 ORTHO05D002294 5.3e-10 67.4 58 51.7
Potri.008G221900 Populus trichocarpa HOM05D002200 ORTHO05D002294 5.3e-10 67.4 64 53.1
SGA_v2.0_scaffold147G36296 Striga asiatica HOM05D002200 ORTHO05D002294 5.3e-10 67.4 67 53.7
GSVIVG01017734001 Vitis vinifera HOM05D002200 ORTHO05D002294 5.3e-10 67.4 57 56.1
FvH4_4g18210 Fragaria vesca HOM05D002200 ORTHO05D002294 7.0e-10 67.0 57 54.4
FAN12G1003 Fragaria x ananassa HOM05D002200 ORTHO05D002294 7.0e-10 67.0 57 54.4
FAN12G2556 Fragaria x ananassa HOM05D002200 ORTHO05D002294 7.0e-10 67.0 57 54.4
AUR62041509 Chenopodium quinoa HOM05D002200 ORTHO05D002294 9.1e-10 66.6 55 56.4
Sabra08G0152700 Salix brachista HOM05D002200 ORTHO05D002294 9.1e-10 66.6 64 48.4
Sed0025797 Sechium edule HOM05D002200 ORTHO05D002294 9.1e-10 66.6 58 55.2
arahy.Tifrunner.gnm1.ann1.44U0MG Arachis hypogaea HOM05D002200 ORTHO05D002294 1.2e-09 66.2 57 57.9
Cfa015390 Carpinus fangiana HOM05D002200 ORTHO05D002294 1.2e-09 66.2 60 51.7
Haze_01196 Corylus avellana HOM05D002200 ORTHO05D002294 1.2e-09 66.2 60 51.7
Lj6g0007957 Lotus japonicus HOM05D002200 ORTHO05D002294 1.6e-09 65.9 58 51.7
Phvul.009G248300 Phaseolus vulgaris HOM05D002200 ORTHO05D002294 1.6e-09 65.9 57 52.6
arahy.Tifrunner.gnm1.ann1.PTDZ4U Arachis hypogaea HOM05D002200 ORTHO05D002294 2.0e-09 65.5 58 55.2
Rhsim02G0008800 Rhododendron simsii HOM05D002200 ORTHO05D002294 2.0e-09 65.5 57 52.6
PSO170G5155 Papaver somniferum HOM05D002200 ORTHO05D002294 2.7e-09 65.1 58 51.7
Potri.008G221700 Populus trichocarpa HOM05D002200 ORTHO05D002294 2.7e-09 65.1 63 49.2
Migut.G00156 Erythranthe guttata HOM05D002200 ORTHO05D002294 3.5e-09 64.7 65 50.8
TPR.G13831 Trifolium pratense HOM05D002200 ORTHO05D002294 3.5e-09 64.7 58 48.3
ClCG00G005050 Citrullus lanatus HOM05D002200 ORTHO05D002294 4.5e-09 64.3 57 52.6
ClCG05G006120 Citrullus lanatus HOM05D002200 ORTHO05D002294 4.5e-09 64.3 57 52.6
unitig_32.g11873 Utricularia gibba HOM05D002200 ORTHO05D002294 4.5e-09 64.3 58 58.6
EL10Ac3g06603 Beta vulgaris HOM05D002200 ORTHO05D002294 5.9e-09 63.9 41 63.4
AT4G15830 Arabidopsis thaliana HOM05D002200 ORTHO05D002294 7.7e-09 63.5 47 59.6
Eucgr.H03917 Eucalyptus grandis HOM05D002200 ORTHO05D002294 7.7e-09 63.5 59 54.2
QL06p008998 Quercus lobata HOM05D002200 ORTHO05D002294 7.7e-09 63.5 59 55.9
TAR362G0235 Trochodendron aralioides HOM05D002200 ORTHO05D002294 7.7e-09 63.5 56 50.0
CDE08G0982 Ceratophyllum demersum HOM05D002200 ORTHO05D002294 1.0e-08 63.2 46 58.7
AUR62044150 Chenopodium quinoa HOM05D002200 ORTHO05D002294 1.0e-08 63.2 55 54.5
MELO3C006666.2 Cucumis melo HOM05D002200 ORTHO05D002294 1.0e-08 63.2 57 50.9
CsaV3_3G014660 Cucumis sativus L. HOM05D002200 ORTHO05D002294 1.0e-08 63.2 57 50.9
TWI09G1195 Tripterygium wilfordii HOM05D002200 ORTHO05D002294 1.0e-08 63.2 62 50.0
Atru.chr4.2847 Acer truncatum HOM05D002200 ORTHO05D002294 1.3e-08 62.8 40 62.5
PSO210G2981 Papaver somniferum HOM05D002200 ORTHO05D002294 1.3e-08 62.8 58 51.7
Sopen01g030770 Solanum pennellii HOM05D002200 ORTHO05D002294 1.3e-08 62.8 57 56.1
CANSAT78G1150 Cannabis sativa HOM05D002200 ORTHO05D002294 1.7e-08 62.4 57 47.4
Lalb_Chr18g0051681 Lupinus albus HOM05D002200 ORTHO05D002294 1.7e-08 62.4 48 56.2
CiPaw.02G082700 Carya illinoinensis HOM05D002200 ORTHO05D002294 2.2e-08 62.0 57 50.9
PGSC0003DMG400006294 Solanum tuberosum HOM05D002200 ORTHO05D002294 2.2e-08 62.0 57 54.4
GSVIVG01007569001 Vitis vinifera HOM05D002200 ORTHO05D002294 2.2e-08 62.0 57 52.6
Carub.0007s2582 Capsella rubella HOM05D002200 ORTHO05D002294 2.9e-08 61.6 49 53.1
Peaxi162Scf01123g00223 Petunia axillaris HOM05D002200 ORTHO05D002294 3.8e-08 61.2 62 50.0
Potri.010G014200 Populus trichocarpa HOM05D002200 ORTHO05D002294 3.8e-08 61.2 61 47.5
VMungo1309G2676 Vigna mungo HOM05D002200 ORTHO05D002294 3.8e-08 61.2 57 50.9
CAN.G185.36 Capsicum annuum HOM05D002200 ORTHO05D002294 5.0e-08 60.8 57 57.9
Ciclev10005528m.g Citrus clementina HOM05D002200 ORTHO05D002294 5.0e-08 60.8 57 52.6
Sc19g0005340 Simmondsia chinensis HOM05D002200 ORTHO05D002294 6.5e-08 60.5 40 62.5
Solyc01g080750.3 Solanum lycopersicum HOM05D002200 ORTHO05D002294 1.1e-07 59.7 57 54.4
Aqoxy2G02975 Aquilegia oxysepala HOM05D002200 ORTHO05D002294 1.5e-07 59.3 56 48.2
BcaC07g37934 Brassica carinata HOM05D002200 ORTHO05D002294 1.5e-07 59.3 49 49.0
A08p12000 Brassica napus HOM05D002200 ORTHO05D002294 1.5e-07 59.3 49 49.0
BolC8t48319H Brassica oleracea HOM05D002200 ORTHO05D002294 1.5e-07 59.3 49 49.0
BraA08t33191Z Brassica rapa HOM05D002200 ORTHO05D002294 1.5e-07 59.3 49 49.0
Sabra08G0152800 Salix brachista HOM05D002200 ORTHO05D002294 1.5e-07 59.3 40 62.5
AL7G39460 Arabidopsis lyrata HOM05D002200 ORTHO05D002294 1.9e-07 58.9 51 51.0
MBI19_g12145_MAGBIO Magnolia biondii HOM05D002200 ORTHO05D002294 1.9e-07 58.9 39 56.4
BcaB04g18334 Brassica carinata HOM05D002200 ORTHO05D002294 2.5e-07 58.5 40 60.0
Nn4g25824 Nelumbo nucifera HOM05D002200 ORTHO05D002294 2.5e-07 58.5 56 51.8
Sed0000385 Sechium edule HOM05D002200 ORTHO05D002294 7.2e-07 57.0 56 50.0
Ah.13g074640 Amaranthus hybridus HOM05D002200 ORTHO05D002294 9.4e-07 56.6 44 54.5
CARHR290360 Cardamine hirsuta HOM05D002200 ORTHO05D002294 1.2e-06 56.2 40 57.5
CAN.G973.6 Capsicum annuum HOM05D002200 ORTHO05D002294 1.6e-06 55.8 41 58.5
Mapoly0123s0032 Marchantia polymorpha HOM05D002200 ORTHO05D002294 1.6e-06 55.8 56 44.6
Thhalv10013984m.g Eutrema salsugineum HOM05D002200 ORTHO05D002294 2.1e-06 55.5 62 46.8
HPP92_011846 Vanilla planifolia HOM05D002200 ORTHO05D002294 2.7e-06 55.1 54 44.4
C02p07350 Brassica napus HOM05D002200 ORTHO05D002294 3.6e-06 54.7 55 49.1
CARHR198520 Cardamine hirsuta HOM05D002200 ORTHO05D002294 3.6e-06 54.7 61 44.3
Cc07_g02350 Coffea canephora HOM05D002200 ORTHO05D002294 3.6e-06 54.7 41 56.1
PGSC0003DMG400006952 Solanum tuberosum HOM05D002200 ORTHO05D002294 3.6e-06 54.7 43 55.8
THA.LOC104821778 Tarenaya hassleriana HOM05D002200 ORTHO05D002294 3.6e-06 54.7 45 53.3
A02p02740 Brassica napus HOM05D002200 ORTHO05D002294 4.7e-06 54.3 60 46.7
BolC2t06666H Brassica oleracea HOM05D002200 ORTHO05D002294 4.7e-06 54.3 55 49.1
BraA02t05245Z Brassica rapa HOM05D002200 ORTHO05D002294 4.7e-06 54.3 60 46.7
Migut.H00133 Erythranthe guttata HOM05D002200 ORTHO05D002294 4.7e-06 54.3 47 51.1
Thhalv10025856m.g Eutrema salsugineum HOM05D002200 ORTHO05D002294 4.7e-06 54.3 56 44.6
BcaC03g13444 Brassica carinata HOM05D002200 ORTHO05D002294 6.1e-06 53.9 60 46.7
BolC9t59074H Brassica oleracea HOM05D002200 ORTHO05D002294 6.1e-06 53.9 41 53.7
Ca_04207_v3 Cicer arietinum L. HOM05D002200 ORTHO05D002294 6.1e-06 53.9 50 50.0
PGSC0003DMG400000499 Solanum tuberosum HOM05D002200 ORTHO05D002294 6.1e-06 53.9 41 56.1
Actinidia06030 Actinidia chinensis HOM05D002200 ORTHO05D002294 8.0e-06 53.5 41 56.1
Sp7g14230 Schrenkiella parvula HOM05D002200 ORTHO05D002294 8.0e-06 53.5 57 42.1


User provided reference genes

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