Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.6e-109 398.7 193 100.0
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 6.7e-89 330.9 196 83.2
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 7.9e-66 254.2 121 94.2
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 1.0e-65 253.8 195 64.1
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.3e-65 252.7 195 64.6
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 3.0e-65 252.3 194 68.0
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 5.1e-65 251.5 195 63.6
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 6.7e-65 251.1 198 62.1
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 8.8e-65 250.8 197 63.5
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 2.6e-64 249.2 193 62.7
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 2.6e-64 249.2 194 62.9
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.3e-64 248.8 192 63.5
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 7.4e-64 247.7 196 64.3
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 9.7e-64 247.3 194 61.9
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 9.7e-64 247.3 193 60.1
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 2.2e-63 246.1 199 62.3
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.7e-63 245.4 191 61.3
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 3.7e-63 245.4 190 63.7
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 4.8e-63 245.0 194 60.8
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 8.2e-63 244.2 190 64.7
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 8.2e-63 244.2 196 62.2
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.4e-62 243.4 191 60.7
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 1.8e-62 243.0 195 62.1
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.4e-62 242.7 191 61.3
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 2.4e-62 242.7 188 63.8
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 3.1e-62 242.3 191 59.7
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.3e-62 241.5 191 60.2
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 5.3e-62 241.5 191 60.7
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 5.3e-62 241.5 192 62.0
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 5.3e-62 241.5 190 61.6
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 7.0e-62 241.1 200 61.5
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 9.1e-62 240.7 184 64.7
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 1.2e-61 240.4 191 63.4
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 3.5e-61 238.8 187 64.2
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 5.9e-61 238.0 194 59.3
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 5.9e-61 238.0 198 61.6
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 5.9e-61 238.0 195 60.0
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 7.7e-61 237.7 197 60.9
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 2.9e-60 235.7 195 59.5
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 3.8e-60 235.3 195 62.1
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 3.8e-60 235.3 201 58.2
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 8.5e-60 234.2 196 61.7
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 8.5e-60 234.2 195 59.0
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.5e-59 233.4 193 58.5
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 3.2e-59 232.3 124 83.1
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 3.2e-59 232.3 119 84.9
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 4.2e-59 231.9 204 58.8
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 4.2e-59 231.9 201 60.7
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 7.2e-59 231.1 199 56.3
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 7.2e-59 231.1 209 55.0
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 7.2e-59 231.1 190 60.5
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 9.4e-59 230.7 193 58.5
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.2e-58 230.3 186 62.4
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.2e-58 230.3 186 62.9
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.2e-58 230.3 186 62.9
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 1.2e-58 230.3 193 59.1
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 8.0e-58 227.6 200 55.5
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 1.4e-57 226.9 266 48.9
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 2.3e-57 226.1 187 59.4
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 2.3e-57 226.1 193 57.5
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 3.0e-57 225.7 197 56.3
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 3.9e-57 225.3 196 60.7
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.2e-57 224.9 223 51.6
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 5.2e-57 224.9 124 77.4
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 6.7e-57 224.6 195 57.4
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 8.8e-57 224.2 223 51.6
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.1e-56 223.8 121 81.0
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.5e-56 223.4 191 57.6
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.5e-56 223.4 139 73.4
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.5e-56 223.4 139 73.4
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 2.0e-56 223.0 187 58.8
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.4e-56 221.9 211 55.5
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 5.7e-56 221.5 261 49.4
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 9.7e-56 220.7 214 52.3
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 9.7e-56 220.7 121 79.3
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 3.7e-55 218.8 193 55.4
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 4.8e-55 218.4 119 79.0
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 4.8e-55 218.4 195 57.4
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 6.3e-55 218.0 194 56.2
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 8.2e-55 217.6 195 57.4
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 9.1e-54 214.2 188 57.4
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 2.0e-53 213.0 123 74.8
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 4.5e-53 211.8 192 54.2
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 5.0e-52 208.4 115 74.8
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 1.5e-51 206.8 220 50.5
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 4.2e-51 205.3 185 54.1
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.2e-50 203.8 203 54.7
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.2e-50 203.8 117 71.8
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 1.6e-50 203.4 172 57.0
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.4e-49 200.3 116 75.0
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.3e-49 199.5 191 57.1
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.2e-49 198.4 198 50.0
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 8.8e-49 197.6 195 54.9
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 8.8e-49 197.6 198 50.0
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.3e-47 193.7 206 52.9
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.7e-47 193.4 191 51.8
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 4.8e-47 191.8 170 54.7
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 1.3e-44 183.7 154 56.5
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.9e-43 179.9 115 60.9
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 3.2e-43 179.1 160 56.9
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 7.2e-43 177.9 143 61.5
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 1.0e-41 174.1 253 41.5
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 2.3e-41 172.9 92 81.5
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 4.0e-41 172.2 115 59.1
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 6.8e-41 171.4 114 63.2
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 7.5e-40 167.9 164 53.7
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.3e-39 167.2 191 49.2
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 9.1e-38 161.0 111 66.7
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.7e-36 156.8 125 60.8
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 1.0e-33 147.5 177 49.2
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.8e-33 146.7 201 44.3
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 1.8e-30 136.7 137 54.0
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.2e-30 136.0 102 52.9
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 4.6e-29 132.1 158 48.1
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 1.0e-28 131.0 128 54.7
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 2.3e-28 129.8 95 52.6
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 6.6e-28 128.3 260 36.2
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 9.5e-27 124.4 63 87.3
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 2.8e-26 122.9 105 43.8
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.4e-25 120.6 159 48.4
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.4e-25 120.6 96 59.4
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 1.8e-25 120.2 106 46.2
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 1.3e-23 114.0 96 49.0
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.7e-23 113.6 60 78.3
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 8.3e-23 111.3 138 47.1
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.1e-22 110.9 95 46.3
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 3.2e-22 109.4 62 75.8
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 2.1e-18 96.7 93 38.7
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 2.1e-18 96.7 112 52.7
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 3.6e-18 95.9 104 41.3
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 6.4e-15 85.1 110 42.7
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 2.7e-13 79.7 74 48.6
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.6e-11 72.0 109 36.7
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 8.1e-10 68.2 115 36.5
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 2.3e-09 66.6 68 54.4
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 4.0e-09 65.9 34 76.5
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 4.0e-09 65.9 34 76.5
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 2.0e-08 63.5 109 33.9


User provided reference genes

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