Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0069691 Helianthus annuus HOM05D004314 ORTHO05D005627 8.9e-65 250.0 115 100.0
HanXRQChr10g0297771 Helianthus annuus HOM05D004314 ORTHO05D005627 1.1e-59 233.0 111 95.5
ECA234G3638 Erigeron canadensis HOM05D004314 ORTHO05D005627 2.5e-59 231.9 111 94.6
Os07g0485100 Oryza sativa ssp. japonica HOM05D004314 ORTHO05D005627 4.3e-59 231.1 111 94.6
Zm00001eb321550 Zea mays HOM05D004314 ORTHO05D005627 4.3e-59 231.1 111 94.6
Cfa005737 Carpinus fangiana HOM05D004314 ORTHO05D005627 5.6e-59 230.7 111 93.7
Nitab4.5_0000313g0120 Nicotiana tabacum HOM05D004314 ORTHO05D005627 9.6e-59 229.9 113 92.9
MD10G1054600 Malus domestica HOM05D004314 ORTHO05D005627 1.2e-58 229.6 111 93.7
Haze_10516 Corylus avellana HOM05D004314 ORTHO05D005627 1.6e-58 229.2 111 92.8
Cc02_g20900 Coffea canephora HOM05D004314 ORTHO05D005627 2.1e-58 228.8 111 93.7
MELO3C018607.2 Cucumis melo HOM05D004314 ORTHO05D005627 2.1e-58 228.8 111 91.9
CsaV3_7G006870 Cucumis sativus L. HOM05D004314 ORTHO05D005627 2.1e-58 228.8 111 91.9
Nitab4.5_0008998g0030 Nicotiana tabacum HOM05D004314 ORTHO05D005627 2.1e-58 228.8 113 92.0
Solyc10g047630.2 Solanum lycopersicum HOM05D004314 ORTHO05D005627 2.1e-58 228.8 111 93.7
Sopen10g018040 Solanum pennellii HOM05D004314 ORTHO05D005627 2.1e-58 228.8 111 93.7
PGSC0003DMG400029019 Solanum tuberosum HOM05D004314 ORTHO05D005627 2.1e-58 228.8 111 93.7
Actinidia02394 Actinidia chinensis HOM05D004314 ORTHO05D005627 2.8e-58 228.4 111 92.8
Dinv24147 Davidia involucrata HOM05D004314 ORTHO05D005627 2.8e-58 228.4 111 92.8
TWI59G0405 Tripterygium wilfordii HOM05D004314 ORTHO05D005627 2.8e-58 228.4 111 92.8
Lsat_1_v5_gn_5_110080 Lactuca sativa HOM05D004314 ORTHO05D005627 3.6e-58 228.0 111 93.7
Peaxi162Scf00003g03234 Petunia axillaris HOM05D004314 ORTHO05D005627 3.6e-58 228.0 111 92.8
CSS0015344 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 4.7e-58 227.6 111 91.9
CSS0039933 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 4.7e-58 227.6 111 91.9
Eucgr.G00868 Eucalyptus grandis HOM05D004314 ORTHO05D005627 6.2e-58 227.3 111 92.8
Potri.007G115900 Populus trichocarpa HOM05D004314 ORTHO05D005627 6.2e-58 227.3 111 92.8
CiPaw.06G157900 Carya illinoinensis HOM05D004314 ORTHO05D005627 8.1e-58 226.9 111 91.9
Migut.B00548 Erythranthe guttata HOM05D004314 ORTHO05D005627 8.1e-58 226.9 113 92.0
COL.COLO4_32391 Corchorus olitorius HOM05D004314 ORTHO05D005627 1.1e-57 226.5 111 91.9
Gohir.A12G016600 Gossypium hirsutum HOM05D004314 ORTHO05D005627 1.1e-57 226.5 111 91.9
Sabra07G0094400 Salix brachista HOM05D004314 ORTHO05D005627 1.1e-57 226.5 111 91.9
Aqoxy6G00869 Aquilegia oxysepala HOM05D004314 ORTHO05D005627 1.4e-57 226.1 111 91.9
Manes.07G041800 Manihot esculenta HOM05D004314 ORTHO05D005627 1.4e-57 226.1 111 92.8
Nn5g29880 Nelumbo nucifera HOM05D004314 ORTHO05D005627 1.4e-57 226.1 111 91.9
Rhsim11G0142100 Rhododendron simsii HOM05D004314 ORTHO05D005627 1.4e-57 226.1 111 91.9
SEGI_34858 Sequoiadendron giganteum HOM05D004314 ORTHO05D005627 1.4e-57 226.1 111 91.0
vmacro01861 Vaccinium macrocarpon HOM05D004314 ORTHO05D005627 1.8e-57 225.7 111 91.0
Ciclev10028599m.g Citrus clementina HOM05D004314 ORTHO05D005627 2.4e-57 225.3 111 91.9
FAN24G0404 Fragaria x ananassa HOM05D004314 ORTHO05D005627 2.4e-57 225.3 111 91.9
Hma1.2p1_1093F.1_g256240 Hydrangea macrophylla HOM05D004314 ORTHO05D005627 2.4e-57 225.3 111 91.0
Oeu014196.1 Olea europaea HOM05D004314 ORTHO05D005627 2.4e-57 225.3 113 89.4
Thecc.02G129100 Theobroma cacao HOM05D004314 ORTHO05D005627 2.4e-57 225.3 111 91.0
Atru.chr6.1274 Acer truncatum HOM05D004314 ORTHO05D005627 3.1e-57 224.9 111 91.0
Duzib248G0634 Durio zibethinus HOM05D004314 ORTHO05D005627 3.1e-57 224.9 111 91.0
Phvul.002G213100 Phaseolus vulgaris HOM05D004314 ORTHO05D005627 3.1e-57 224.9 111 91.0
arahy.Tifrunner.gnm1.ann1.1Z5YUN Arachis hypogaea HOM05D004314 ORTHO05D005627 4.0e-57 224.6 113 89.4
arahy.Tifrunner.gnm1.ann1.NRM1UC Arachis hypogaea HOM05D004314 ORTHO05D005627 4.0e-57 224.6 113 89.4
Prupe.8G070200 Prunus persica HOM05D004314 ORTHO05D005627 4.0e-57 224.6 111 91.9
Sed0001289 Sechium edule HOM05D004314 ORTHO05D005627 4.0e-57 224.6 111 89.2
TAR381G1143 Trochodendron aralioides HOM05D004314 ORTHO05D005627 4.0e-57 224.6 111 90.1
Thhalv10004324m.g Eutrema salsugineum HOM05D004314 ORTHO05D005627 5.2e-57 224.2 111 91.0
Gohir.D12G017200 Gossypium hirsutum HOM05D004314 ORTHO05D005627 5.2e-57 224.2 111 91.0
Gorai.008G017500 Gossypium raimondii HOM05D004314 ORTHO05D005627 5.2e-57 224.2 111 91.0
GSVIVG01015663001 Vitis vinifera HOM05D004314 ORTHO05D005627 5.2e-57 224.2 111 90.1
FvH4_2g11570 Fragaria vesca HOM05D004314 ORTHO05D005627 6.8e-57 223.8 111 91.0
Gohir.D01G028700 Gossypium hirsutum HOM05D004314 ORTHO05D005627 6.8e-57 223.8 111 90.1
Gorai.002G038200 Gossypium raimondii HOM05D004314 ORTHO05D005627 6.8e-57 223.8 111 90.1
FAN02G2826 Fragaria x ananassa HOM05D004314 ORTHO05D005627 8.9e-57 223.4 111 91.0
QL11p025244 Quercus lobata HOM05D004314 ORTHO05D005627 8.9e-57 223.4 111 91.0
VMungo0251G2073 Vigna mungo HOM05D004314 ORTHO05D005627 8.9e-57 223.4 111 90.1
Aa31LG1G17530 Aethionema arabicum HOM05D004314 ORTHO05D005627 1.5e-56 222.6 111 90.1
FAN15G2873 Fragaria x ananassa HOM05D004314 ORTHO05D005627 1.5e-56 222.6 111 91.0
BcaC04g23320 Brassica carinata HOM05D004314 ORTHO05D005627 2.0e-56 222.2 111 90.1
BcaNung06256 Brassica carinata HOM05D004314 ORTHO05D005627 2.0e-56 222.2 111 90.1
C09p09760 Brassica napus HOM05D004314 ORTHO05D005627 2.0e-56 222.2 111 90.1
BolC9t53887H Brassica oleracea HOM05D004314 ORTHO05D005627 2.0e-56 222.2 111 90.1
AUR62012883 Chenopodium quinoa HOM05D004314 ORTHO05D005627 2.0e-56 222.2 111 88.3
DCAR_021906 Daucus carota HOM05D004314 ORTHO05D005627 2.0e-56 222.2 111 90.1
HPP92_014474 Vanilla planifolia HOM05D004314 ORTHO05D005627 2.0e-56 222.2 111 90.1
CANSAT54G1432 Cannabis sativa HOM05D004314 ORTHO05D005627 2.6e-56 221.9 111 90.1
Hund00381 Selenicereus undatus HOM05D004314 ORTHO05D005627 2.6e-56 221.9 111 89.2
Ah.01g023920 Amaranthus hybridus HOM05D004314 ORTHO05D005627 3.4e-56 221.5 111 89.2
AT5G64370 Arabidopsis thaliana HOM05D004314 ORTHO05D005627 3.4e-56 221.5 111 90.1
CAN.G1223.2 Capsicum annuum HOM05D004314 ORTHO05D005627 3.4e-56 221.5 111 90.1
Cpa.g.sc20.4 Carica papaya HOM05D004314 ORTHO05D005627 3.4e-56 221.5 111 89.2
CDE02G1136 Ceratophyllum demersum HOM05D004314 ORTHO05D005627 3.4e-56 221.5 111 90.1
AUR62027107 Chenopodium quinoa HOM05D004314 ORTHO05D005627 3.4e-56 221.5 111 88.3
EL10Ac9g22069 Beta vulgaris HOM05D004314 ORTHO05D005627 4.4e-56 221.1 111 88.3
Lalb_Chr05g0217821 Lupinus albus HOM05D004314 ORTHO05D005627 4.4e-56 221.1 111 88.3
PSO541G1934 Papaver somniferum HOM05D004314 ORTHO05D005627 4.4e-56 221.1 111 88.3
SalBow6G1754 Salvia bowleyana HOM05D004314 ORTHO05D005627 4.4e-56 221.1 113 88.5
SalBow6G4888 Salvia bowleyana HOM05D004314 ORTHO05D005627 4.4e-56 221.1 113 88.5
unitig_744.g24190 Utricularia gibba HOM05D004314 ORTHO05D005627 4.4e-56 221.1 113 88.5
Glyma.07G182100 Glycine max HOM05D004314 ORTHO05D005627 5.8e-56 220.7 111 89.2
PGR142G0142 Punica granatum HOM05D004314 ORTHO05D005627 7.6e-56 220.3 111 88.3
RcHm_v2.0_Chr6g0270931 Rosa chinensis HOM05D004314 ORTHO05D005627 7.6e-56 220.3 111 91.9
THA.LOC104818523 Tarenaya hassleriana HOM05D004314 ORTHO05D005627 7.6e-56 220.3 111 89.2
BcaC01g06912 Brassica carinata HOM05D004314 ORTHO05D005627 9.9e-56 219.9 111 89.2
C03p61910 Brassica napus HOM05D004314 ORTHO05D005627 9.9e-56 219.9 111 89.2
BolC3t18450H Brassica oleracea HOM05D004314 ORTHO05D005627 9.9e-56 219.9 111 89.2
BraA06t26047Z Brassica rapa HOM05D004314 ORTHO05D005627 1.3e-55 219.5 111 88.3
PSO675G0906 Papaver somniferum HOM05D004314 ORTHO05D005627 1.3e-55 219.5 111 87.4
MSTRG.5286 Avicennia marina HOM05D004314 ORTHO05D005627 1.7e-55 219.2 111 89.2
CARHR278310 Cardamine hirsuta HOM05D004314 ORTHO05D005627 1.7e-55 219.2 111 89.2
Ca_18382_v3 Cicer arietinum L. HOM05D004314 ORTHO05D005627 1.7e-55 219.2 111 86.5
Sp2g27460 Schrenkiella parvula HOM05D004314 ORTHO05D005627 1.7e-55 219.2 111 89.2
AL8G41730 Arabidopsis lyrata HOM05D004314 ORTHO05D005627 2.2e-55 218.8 111 89.2
A06p31050 Brassica napus HOM05D004314 ORTHO05D005627 2.2e-55 218.8 111 88.3
A09p08650 Brassica napus HOM05D004314 ORTHO05D005627 2.2e-55 218.8 111 89.2
BraA09t36514Z Brassica rapa HOM05D004314 ORTHO05D005627 2.2e-55 218.8 111 89.2
ATR0767G162 Amborella trichopoda HOM05D004314 ORTHO05D005627 2.9e-55 218.4 111 87.4
Sc08g0003970 Simmondsia chinensis HOM05D004314 ORTHO05D005627 2.9e-55 218.4 111 87.4
Carub.0008s2517 Capsella rubella HOM05D004314 ORTHO05D005627 6.4e-55 217.2 111 88.3
TPR.G2844 Trifolium pratense HOM05D004314 ORTHO05D005627 6.4e-55 217.2 111 86.5
Medtr4g093570 Medicago truncatula HOM05D004314 ORTHO05D005627 8.4e-55 216.9 111 86.5
SGA_v2.0_scaffold83G26378 Striga asiatica HOM05D004314 ORTHO05D005627 1.1e-54 216.5 113 85.8
HanXRQChr04g0116191 Helianthus annuus HOM05D004314 ORTHO05D005627 4.2e-54 214.5 110 89.1
Lj4g0019883 Lotus japonicus HOM05D004314 ORTHO05D005627 1.2e-53 213.0 111 84.7
Pp3c3_36650 Physcomitrium patens HOM05D004314 ORTHO05D005627 2.1e-53 212.2 111 84.7
CSS0001562 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 2.7e-53 211.8 110 84.5
CSS0022890 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 2.7e-53 211.8 110 84.5
PRCOL_00005583 Prasinoderma coloniale HOM05D004314 ORTHO05D005627 2.7e-53 211.8 113 83.2
SMO356G0581 Selaginella moellendorffii HOM05D004314 ORTHO05D005627 1.7e-52 209.1 113 83.2
Mapoly0006s0006 Marchantia polymorpha HOM05D004314 ORTHO05D005627 3.0e-52 208.4 111 82.9
Cre01.g022650 Chlamydomonas reinhardtii HOM05D004314 ORTHO05D005627 4.3e-51 204.5 111 79.3
AagrBONN_evm.TU.Sc2ySwM_344.1110 Anthoceros agrestis HOM05D004314 ORTHO05D005627 5.6e-51 204.1 111 82.9
CBR_g26363 Chara braunii HOM05D004314 ORTHO05D005627 2.4e-49 198.7 111 79.3
MCO09G090 Micromonas commoda HOM05D004314 ORTHO05D005627 6.9e-49 197.2 111 80.2
ClCG09G016090 Citrullus lanatus HOM05D004314 ORTHO05D005627 4.4e-48 194.5 111 82.0
Medtr4g093580 Medicago truncatula HOM05D004314 ORTHO05D005627 1.3e-47 193.0 111 78.4
Lj5C229G21 Lonicera japonica HOM05D004314 ORTHO05D005627 2.9e-47 191.8 111 82.0
CiPaw.05G029300 Carya illinoinensis HOM05D004314 ORTHO05D005627 4.6e-45 184.5 111 76.6
Haze_27162 Corylus avellana HOM05D004314 ORTHO05D005627 5.1e-44 181.0 111 71.2
Haze_10517 Corylus avellana HOM05D004314 ORTHO05D005627 3.3e-43 178.3 111 74.8
Eucgr.G00862 Eucalyptus grandis HOM05D004314 ORTHO05D005627 6.2e-42 174.1 111 75.7
MBI16_g27581_MAGBIO Magnolia biondii HOM05D004314 ORTHO05D005627 9.0e-41 170.2 149 59.1
MD05G1048000 Malus domestica HOM05D004314 ORTHO05D005627 4.5e-40 167.9 100 78.0
BcaB04g19968 Brassica carinata HOM05D004314 ORTHO05D000740 3.9e-36 154.8 85 83.5
BcaC01g06917 Brassica carinata HOM05D004314 ORTHO05D005627 5.3e-33 144.4 109 66.1
Eucgr.G00867 Eucalyptus grandis HOM05D004314 ORTHO05D005627 1.8e-28 129.4 80 76.2
Psat7g101160 Pisum sativum HOM05D004314 ORTHO05D005627 5.1e-28 127.9 82 67.1
CDE01G0635 Ceratophyllum demersum HOM05D004314 ORTHO05D005627 1.5e-27 126.3 60 90.0
Migut.N01098 Erythranthe guttata HOM05D004314 ORTHO05D005627 1.0e-23 113.6 56 91.1
TPR.G22394 Trifolium pratense HOM05D004314 ORTHO05D005627 1.7e-23 112.8 60 81.7
vmacro01862 Vaccinium macrocarpon HOM05D004314 ORTHO05D005627 5.1e-20 101.3 83 65.1
FAN20G1885 Fragaria x ananassa HOM05D004314 ORTHO05D005627 1.9e-19 99.4 75 65.3
CAN.G1223.1 Capsicum annuum HOM05D004314 ORTHO05D005627 3.7e-18 95.1 78 59.0
TPR.G2889 Trifolium pratense HOM05D002438 ORTHO05D002617 5.7e-11 71.2 46 69.6
Haze_10519 Corylus avellana HOM05D004314 ORTHO05D005627 6.9e-09 64.3 31 83.9
Cre12.g535750 Chlamydomonas reinhardtii HOM05D002338 ORTHO05D006706 5.0e-07 58.2 115 32.2
PRCOL_00003112 Prasinoderma coloniale HOM05D002338 ORTHO05D006706 6.5e-07 57.8 115 33.0
Gohir.D09G095800 Gossypium hirsutum HOM05D002338 ORTHO05D006706 1.4e-06 56.6 115 33.9
Gorai.006G112500 Gossypium raimondii HOM05D002338 ORTHO05D006706 1.4e-06 56.6 115 33.9
TAR633G2567 Trochodendron aralioides HOM05D002338 ORTHO05D006706 1.4e-06 56.6 116 33.6
MSTRG.12373 Avicennia marina HOM05D002338 ORTHO05D006706 1.9e-06 56.2 115 32.2
MSTRG.17703 Avicennia marina HOM05D002338 ORTHO05D006706 1.9e-06 56.2 116 32.8
Medtr2g086600 Medicago truncatula HOM05D002338 ORTHO05D006706 1.9e-06 56.2 115 32.2
Psat1g178360 Pisum sativum HOM05D002338 ORTHO05D006706 1.9e-06 56.2 115 32.2
Psat5g258120 Pisum sativum HOM05D002338 ORTHO05D006706 1.9e-06 56.2 115 32.2
Ca_01654_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006706 2.5e-06 55.8 115 33.0
TPR.G4472 Trifolium pratense HOM05D002338 ORTHO05D006706 2.5e-06 55.8 115 33.0
Gohir.A09G096100 Gossypium hirsutum HOM05D002338 ORTHO05D006706 3.2e-06 55.5 115 33.0
PSO801G0423 Papaver somniferum HOM05D002338 ORTHO05D006706 3.2e-06 55.5 116 32.8
Pp3s32_700 Physcomitrium patens HOM05D001787 ORTHO05D007379 3.2e-06 55.5 78 38.5
PSO339G0254 Papaver somniferum HOM05D002338 ORTHO05D006706 4.2e-06 55.1 116 32.8
Sed0026919 Sechium edule HOM05D002338 ORTHO05D006706 4.2e-06 55.1 115 33.0
Oeu002370.1 Olea europaea HOM05D002338 ORTHO05D006706 9.4e-06 53.9 115 32.2


User provided reference genes

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