Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 6.6e-110 401.0 242 100.0
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 5.6e-85 318.2 202 98.5
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 2.1e-79 299.7 202 83.7
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 1.7e-73 280.0 199 85.9
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 2.3e-70 269.6 201 77.1
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 1.5e-69 266.9 203 74.4
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 2.4e-67 259.6 205 71.7
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 3.1e-67 259.2 201 67.2
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 5.3e-67 258.5 204 73.5
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 5.3e-67 258.5 203 75.9
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 6.9e-67 258.1 208 75.0
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 1.2e-66 257.3 207 77.8
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.5e-66 256.9 207 67.6
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 2.6e-66 256.1 201 68.7
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 3.4e-66 255.8 203 66.5
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 7.6e-66 254.6 202 64.9
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.3e-65 253.8 204 72.5
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 2.2e-65 253.1 204 64.7
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 4.9e-65 251.9 202 78.2
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.9e-65 251.9 204 64.7
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 4.9e-65 251.9 199 71.9
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 4.9e-65 251.9 195 81.0
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 4.9e-65 251.9 198 81.8
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 6.5e-65 251.5 204 70.6
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 8.4e-65 251.1 198 71.7
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 1.9e-64 250.0 203 71.4
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.9e-64 250.0 209 74.2
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 3.2e-64 249.2 202 72.3
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 3.2e-64 249.2 206 63.6
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 4.2e-64 248.8 199 79.9
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 4.2e-64 248.8 203 78.8
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 5.5e-64 248.4 207 62.8
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 7.1e-64 248.1 213 76.1
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 7.1e-64 248.1 208 77.4
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 9.3e-64 247.7 202 62.9
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 2.1e-63 246.5 219 61.2
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 2.1e-63 246.5 191 82.7
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 2.7e-63 246.1 207 62.3
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 6.0e-63 245.0 205 73.2
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 6.0e-63 245.0 205 68.3
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 6.0e-63 245.0 205 65.4
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 6.0e-63 245.0 205 62.4
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 7.9e-63 244.6 201 63.2
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.0e-62 244.2 197 68.5
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 1.3e-62 243.8 202 64.9
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.3e-62 243.8 203 80.8
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.3e-62 243.8 216 60.2
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.3e-62 243.8 185 84.3
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.8e-62 243.4 203 62.6
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 3.0e-62 242.7 196 64.8
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 3.0e-62 242.7 204 62.7
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 3.9e-62 242.3 204 70.6
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 3.9e-62 242.3 203 66.0
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 3.9e-62 242.3 200 64.0
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 8.7e-62 241.1 209 62.7
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 8.7e-62 241.1 189 76.2
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 1.1e-61 240.7 203 64.0
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.1e-61 240.7 191 79.1
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.1e-61 240.7 211 73.0
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.1e-61 240.7 195 80.0
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 1.1e-61 240.7 203 62.1
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 1.9e-61 240.0 203 73.4
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 1.9e-61 240.0 204 64.7
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.9e-61 240.0 203 64.0
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 2.5e-61 239.6 200 69.0
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 4.3e-61 238.8 202 67.3
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 5.7e-61 238.4 202 73.3
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.7e-61 238.4 205 62.4
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 5.7e-61 238.4 206 65.0
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 9.6e-61 237.7 202 70.3
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 9.6e-61 237.7 206 61.7
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.3e-60 237.3 203 66.5
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 1.6e-60 236.9 203 67.5
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 1.6e-60 236.9 202 68.8
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 1.6e-60 236.9 202 68.8
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 2.1e-60 236.5 203 69.0
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 2.1e-60 236.5 187 74.3
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 2.8e-60 236.1 203 63.1
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 2.8e-60 236.1 133 82.7
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 3.7e-60 235.7 206 70.4
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 4.8e-60 235.3 204 69.1
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 6.2e-60 235.0 202 72.8
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.4e-59 233.8 201 71.1
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 2.4e-59 233.0 203 70.0
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 4.1e-59 232.3 206 73.3
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 6.9e-59 231.5 129 83.7
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 9.0e-59 231.1 199 60.8
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 7.6e-58 228.0 201 60.7
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 1.7e-57 226.9 199 59.8
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 3.8e-57 225.7 194 67.5
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 5.0e-57 225.3 201 70.1
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 5.0e-57 225.3 199 64.3
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.9e-56 223.4 186 71.5
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 9.3e-56 221.1 117 85.5
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 1.6e-55 220.3 191 79.1
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 3.5e-55 219.2 206 66.5
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 4.6e-55 218.8 132 77.3
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 6.1e-55 218.4 133 78.2
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.1e-55 218.4 133 78.2
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.1e-55 218.4 133 78.2
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 3.0e-54 216.1 126 81.0
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 7.4e-53 211.5 206 68.4
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 9.7e-53 211.1 111 85.6
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 9.7e-53 211.1 111 85.6
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.8e-52 208.8 132 75.8
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 9.0e-51 204.5 201 69.2
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.5e-50 203.8 115 80.0
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.0e-49 201.1 202 58.4
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.4e-48 197.2 201 62.2
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 5.5e-48 195.3 112 79.5
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 9.4e-48 194.5 126 71.4
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 1.5e-45 187.2 151 68.2
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.0e-45 186.8 107 82.2
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.7e-44 183.7 203 60.1
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 6.3e-44 181.8 158 80.4
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 1.4e-43 180.6 109 75.2
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 4.5e-42 175.6 100 82.0
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 7.7e-42 174.9 91 87.9
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 3.6e-39 166.0 155 56.1
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 1.8e-30 137.1 82 75.6
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 6.7e-30 135.2 205 48.3
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 2.4e-27 126.7 101 55.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 3.8e-25 119.4 121 57.0
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.5e-24 117.5 120 73.3
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.6e-21 106.7 205 49.8
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 9.8e-21 104.8 59 79.7
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.4e-19 100.9 93 49.5
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 4.1e-19 99.4 97 46.4
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 8.5e-17 91.7 83 60.2
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 8.8e-14 81.6 100 44.0
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 7.0e-11 72.0 91 45.1
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.2e-10 71.2 38 84.2
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.5e-10 69.7 45 68.9
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.4e-06 57.8 28 85.7
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 5.2e-06 55.8 39 61.5
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.8e-06 55.5 106 41.5


User provided reference genes

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