Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 2.0e-35 151.8 70 100.0
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 7.0e-12 73.6 40 77.5
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 1.2e-11 72.8 39 79.5
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.2e-11 72.8 39 79.5
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 2.6e-11 71.6 41 70.7
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 2.6e-11 71.6 41 70.7
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 2.6e-11 71.6 41 70.7
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 5.9e-11 70.5 39 74.4
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 5.9e-11 70.5 39 74.4
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 5.9e-11 70.5 39 71.8
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 5.9e-11 70.5 41 68.3
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 5.9e-11 70.5 41 68.3
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 5.9e-11 70.5 39 74.4
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 5.9e-11 70.5 40 75.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 5.9e-11 70.5 39 74.4
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 5.9e-11 70.5 39 74.4
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 7.7e-11 70.1 40 72.5
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 7.7e-11 70.1 39 74.4
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.7e-11 70.1 39 71.8
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 7.7e-11 70.1 40 72.5
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 7.7e-11 70.1 39 71.8
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 7.7e-11 70.1 39 71.8
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.0e-10 69.7 39 74.4
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.0e-10 69.7 39 69.2
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.0e-10 69.7 39 69.2
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 1.0e-10 69.7 39 71.8
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 1.0e-10 69.7 39 74.4
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 1.0e-10 69.7 39 74.4
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 1.3e-10 69.3 39 71.8
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.3e-10 69.3 41 68.3
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.3e-10 69.3 41 68.3
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.3e-10 69.3 41 68.3
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.3e-10 69.3 39 71.8
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.3e-10 69.3 39 71.8
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 1.7e-10 68.9 40 70.0
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 1.7e-10 68.9 40 70.0
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 1.7e-10 68.9 40 70.0
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 1.7e-10 68.9 40 70.0
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.7e-10 68.9 40 70.0
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.7e-10 68.9 40 70.0
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.7e-10 68.9 39 71.8
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.7e-10 68.9 39 71.8
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.7e-10 68.9 40 72.5
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.7e-10 68.9 39 71.8
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.7e-10 68.9 39 69.2
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 2.2e-10 68.6 39 71.8
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 2.2e-10 68.6 41 65.9
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 2.2e-10 68.6 39 71.8
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.2e-10 68.6 39 71.8
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 2.2e-10 68.6 39 71.8
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 2.2e-10 68.6 39 71.8
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 2.2e-10 68.6 39 71.8
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.2e-10 68.6 39 69.2
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 2.2e-10 68.6 39 71.8
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 71.8
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 69.2
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 2.9e-10 68.2 40 72.5
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 69.2
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 2.9e-10 68.2 40 70.0
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 71.8
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 71.8
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 71.8
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 71.8
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 69.2
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 71.8
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 2.9e-10 68.2 39 71.8
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 3.8e-10 67.8 39 71.8
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.8e-10 67.8 40 70.0
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.8e-10 67.8 40 70.0
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 3.8e-10 67.8 40 67.5
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.8e-10 67.8 41 65.9
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 3.8e-10 67.8 39 71.8
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 3.8e-10 67.8 39 71.8
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 5.0e-10 67.4 40 70.0
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 5.0e-10 67.4 39 66.7
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 5.0e-10 67.4 39 69.2
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.0e-10 67.4 41 65.9
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.0e-10 67.4 41 65.9
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 5.0e-10 67.4 39 69.2
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 5.0e-10 67.4 39 69.2
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 5.0e-10 67.4 39 69.2
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 5.0e-10 67.4 39 69.2
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 5.0e-10 67.4 39 69.2
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 6.5e-10 67.0 39 69.2
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 6.5e-10 67.0 39 69.2
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 6.5e-10 67.0 39 69.2
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 6.5e-10 67.0 39 69.2
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 6.5e-10 67.0 39 69.2
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 6.5e-10 67.0 39 69.2
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 6.5e-10 67.0 39 71.8
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 8.5e-10 66.6 40 67.5
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 8.5e-10 66.6 40 67.5
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 8.5e-10 66.6 40 67.5
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 8.5e-10 66.6 40 67.5
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 8.5e-10 66.6 40 67.5
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 66.7
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 69.2
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 69.2
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 66.7
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 69.2
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 69.2
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 69.2
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 69.2
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 69.2
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 69.2
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 8.5e-10 66.6 39 69.2
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 1.1e-09 66.2 40 67.5
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 1.1e-09 66.2 39 66.7
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 1.1e-09 66.2 39 69.2
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.1e-09 66.2 39 69.2
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.1e-09 66.2 39 69.2
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 1.1e-09 66.2 39 69.2
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 1.1e-09 66.2 39 69.2
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.1e-09 66.2 39 69.2
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.5e-09 65.9 39 69.2
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.5e-09 65.9 39 66.7
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.5e-09 65.9 37 73.0
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 1.5e-09 65.9 39 64.1
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.5e-09 65.9 39 69.2
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.9e-09 65.5 39 69.2
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 1.9e-09 65.5 39 69.2
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.9e-09 65.5 39 66.7
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 2.5e-09 65.1 40 67.5
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 2.5e-09 65.1 39 69.2
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 3.2e-09 64.7 39 66.7
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 3.2e-09 64.7 39 69.2
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 3.2e-09 64.7 39 66.7
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 3.2e-09 64.7 39 66.7
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 3.2e-09 64.7 39 66.7
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 3.2e-09 64.7 39 66.7
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 4.2e-09 64.3 39 66.7
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 4.2e-09 64.3 39 66.7
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 4.2e-09 64.3 39 69.2
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 4.2e-09 64.3 39 66.7
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 5.5e-09 63.9 40 60.0
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.5e-09 63.9 38 68.4
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 5.5e-09 63.9 39 66.7
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 5.5e-09 63.9 39 69.2
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 7.2e-09 63.5 40 65.0
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 9.4e-09 63.2 39 66.7
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 9.4e-09 63.2 39 64.1
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 9.4e-09 63.2 39 64.1
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 9.4e-09 63.2 39 66.7
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 9.4e-09 63.2 36 72.2
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 9.4e-09 63.2 39 66.7
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 1.2e-08 62.8 39 64.1
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 1.6e-08 62.4 39 66.7
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 2.1e-08 62.0 39 64.1
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 2.7e-08 61.6 39 64.1
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 6.1e-08 60.5 40 60.0
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 6.1e-08 60.5 40 60.0
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.4e-07 59.3 33 72.7
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.3e-07 58.5 33 69.7
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 3.0e-07 58.2 39 66.7
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 3.0e-07 58.2 39 56.4
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.0e-07 58.2 38 60.5
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 1.5e-06 55.8 33 66.7
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 3.3e-06 54.7 37 56.8
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 4.4e-06 54.3 37 56.8
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 4.4e-06 54.3 39 53.8
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 4.4e-06 54.3 34 61.8
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 9.7e-06 53.1 40 47.5


User provided reference genes

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