Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 3.1e-47 191.4 95 100.0
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.8e-18 95.9 49 93.9
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 2.3e-18 95.5 49 91.8
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 1.5e-17 92.8 49 91.8
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.0e-17 92.4 50 84.0
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 2.6e-17 92.0 49 89.8
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.6e-17 92.0 49 89.8
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.6e-17 92.0 48 89.6
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 3.4e-17 91.7 49 87.8
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 3.4e-17 91.7 48 89.6
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 5.7e-17 90.9 48 87.5
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 5.7e-17 90.9 48 89.6
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 7.5e-17 90.5 48 89.6
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 7.5e-17 90.5 48 89.6
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 7.5e-17 90.5 49 87.8
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 9.8e-17 90.1 48 85.4
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 9.8e-17 90.1 48 85.4
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 9.8e-17 90.1 48 87.5
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 9.8e-17 90.1 48 87.5
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 9.8e-17 90.1 48 87.5
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.3e-16 89.7 47 89.4
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.3e-16 89.7 48 89.6
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.3e-16 89.7 48 87.5
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.7e-16 89.4 50 86.0
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.7e-16 89.4 48 89.6
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.7e-16 89.4 48 87.5
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 2.2e-16 89.0 47 89.4
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.2e-16 89.0 49 87.8
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 2.8e-16 88.6 48 87.5
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.8e-16 88.6 49 81.6
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.8e-16 88.6 48 87.5
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.8e-16 88.6 48 87.5
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.8e-16 88.6 48 87.5
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.8e-16 88.6 48 87.5
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 2.8e-16 88.6 48 87.5
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.8e-16 88.6 49 87.8
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 2.8e-16 88.6 49 87.8
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.8e-16 88.6 48 85.4
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.8e-16 88.6 49 85.7
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.8e-16 88.6 49 85.7
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 2.8e-16 88.6 48 85.4
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 3.7e-16 88.2 47 87.2
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 3.7e-16 88.2 48 85.4
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 3.7e-16 88.2 48 87.5
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 3.7e-16 88.2 48 85.4
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 4.8e-16 87.8 48 83.3
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 4.8e-16 87.8 48 83.3
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 6.3e-16 87.4 48 83.3
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 6.3e-16 87.4 48 85.4
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 8.3e-16 87.0 48 83.3
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 8.3e-16 87.0 49 85.7
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.3e-16 87.0 48 87.5
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 8.3e-16 87.0 48 85.4
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 8.3e-16 87.0 48 83.3
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 1.1e-15 86.7 48 83.3
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.1e-15 86.7 49 85.7
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.1e-15 86.7 49 85.7
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.1e-15 86.7 49 85.7
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-15 86.7 48 85.4
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.1e-15 86.7 48 87.5
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.1e-15 86.7 48 83.3
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 1.4e-15 86.3 48 87.5
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.4e-15 86.3 49 83.7
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.4e-15 86.3 48 83.3
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 1.8e-15 85.9 48 83.3
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.8e-15 85.9 65 69.2
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 2.4e-15 85.5 49 83.7
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 3.1e-15 85.1 48 81.2
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.1e-15 85.1 48 83.3
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 3.1e-15 85.1 48 81.2
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.1e-15 84.7 48 79.2
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 4.1e-15 84.7 47 85.1
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.1e-15 84.7 49 83.7
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 4.1e-15 84.7 49 81.6
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 4.1e-15 84.7 49 81.6
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 5.4e-15 84.3 48 83.3
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 5.4e-15 84.3 50 78.0
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.2e-14 83.2 49 79.6
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.6e-14 82.8 48 83.3
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 2.7e-14 82.0 48 81.2
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 3.5e-14 81.6 48 81.2
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 4.5e-14 81.3 48 81.2
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 4.5e-14 81.3 48 79.2
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 4.5e-14 81.3 48 83.3
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.9e-14 80.9 49 79.6
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 7.7e-14 80.5 48 79.2
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 2.3e-13 79.0 48 79.2
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 3.8e-13 78.2 48 77.1
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 5.0e-13 77.8 48 79.2
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.0e-13 77.8 49 75.5
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 6.5e-13 77.4 48 75.0
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 8.6e-13 77.0 48 77.1
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.5e-12 76.3 48 72.9
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.5e-12 76.3 54 68.5
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.9e-12 75.9 48 75.0
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 2.5e-12 75.5 48 72.9
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 4.2e-12 74.7 49 73.5
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 5.5e-12 74.3 48 72.9
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 5.5e-12 74.3 54 66.7
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 9.5e-12 73.6 47 66.0
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.8e-11 72.0 48 64.6
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 8.0e-11 70.5 48 68.8
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.8e-10 69.3 61 59.0
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 2.3e-10 68.9 47 68.1
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 4.0e-10 68.2 49 63.3
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.6e-09 65.5 60 55.0
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.4e-09 64.7 61 54.1
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 7.5e-09 63.9 49 65.3
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.8e-08 62.0 47 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 6.3e-08 60.8 46 60.9
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 8.3e-08 60.5 49 59.2
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 8.3e-08 60.5 49 59.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 8.3e-08 60.5 49 59.2
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.4e-07 59.7 49 61.2
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 1.8e-07 59.3 48 56.2
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 4.1e-07 58.2 52 55.8
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 5.4e-07 57.8 49 57.1
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 5.4e-07 57.8 49 57.1
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 5.4e-07 57.8 49 57.1
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.2e-06 56.6 49 57.1
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.2e-06 56.6 49 57.1
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.2e-06 56.6 49 57.1
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.6e-06 56.2 48 54.2
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 2.0e-06 55.8 49 57.1
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 2.0e-06 55.8 49 57.1
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 2.0e-06 55.8 49 57.1


User provided reference genes

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