Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 2.4e-34 148.3 77 100.0
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 1.3e-32 142.5 73 100.0
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 3.0e-32 141.4 75 94.7
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 6.2e-30 133.7 75 88.0
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 4.9e-27 124.0 75 81.3
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 6.5e-27 123.6 75 82.7
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 1.4e-26 122.5 75 80.0
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 5.5e-26 120.6 75 76.0
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 9.3e-26 119.8 73 79.5
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.2e-25 119.4 75 76.0
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.2e-25 119.4 75 77.3
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 2.1e-25 118.6 75 80.0
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 2.7e-25 118.2 75 77.3
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 2.7e-25 118.2 74 78.4
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 4.6e-25 117.5 75 76.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 4.6e-25 117.5 75 76.0
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 6.0e-25 117.1 75 76.0
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 7.9e-25 116.7 75 74.7
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 7.9e-25 116.7 75 73.3
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 7.9e-25 116.7 75 74.7
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 7.9e-25 116.7 75 76.0
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.0e-24 116.3 75 76.0
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 1.0e-24 116.3 75 74.7
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.3e-24 115.9 74 75.7
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.3e-24 115.9 75 77.3
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.3e-24 115.9 75 77.3
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.3e-24 115.9 75 77.3
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.3e-24 115.9 75 77.3
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.3e-24 115.9 75 77.3
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.8e-24 115.5 74 74.3
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 1.8e-24 115.5 74 74.3
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.8e-24 115.5 74 75.7
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.8e-24 115.5 74 75.7
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.8e-24 115.5 73 75.3
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.8e-24 115.5 73 79.5
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.3e-24 115.2 76 76.3
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.3e-24 115.2 75 74.7
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.3e-24 115.2 75 74.7
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.3e-24 115.2 75 74.7
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.0e-24 114.8 73 75.3
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.0e-24 114.8 73 75.3
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 3.0e-24 114.8 75 73.3
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 3.0e-24 114.8 73 78.1
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.9e-24 114.4 74 74.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.9e-24 114.4 74 74.3
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 3.9e-24 114.4 75 72.0
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 3.9e-24 114.4 73 78.1
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 5.1e-24 114.0 74 73.0
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 5.1e-24 114.0 74 73.0
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 5.1e-24 114.0 74 73.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 5.1e-24 114.0 75 74.7
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 6.7e-24 113.6 73 76.7
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 6.7e-24 113.6 75 73.3
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 6.7e-24 113.6 75 74.7
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 6.7e-24 113.6 75 72.0
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 6.7e-24 113.6 75 72.0
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 8.7e-24 113.2 75 72.0
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.1e-23 112.8 75 72.0
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.1e-23 112.8 75 72.0
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.5e-23 112.5 75 70.7
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 1.5e-23 112.5 74 73.0
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.5e-23 112.5 73 74.0
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.9e-23 112.1 73 75.3
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.9e-23 112.1 73 75.3
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 2.5e-23 111.7 75 70.7
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.5e-23 111.7 75 72.0
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 3.3e-23 111.3 74 71.6
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 3.3e-23 111.3 75 74.7
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 4.3e-23 110.9 75 73.3
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 9.6e-23 109.8 75 69.3
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.3e-22 109.4 72 70.8
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 1.6e-22 109.0 74 70.3
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 2.1e-22 108.6 70 74.3
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.1e-22 108.6 74 70.3
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 2.1e-22 108.6 75 72.0
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 2.8e-22 108.2 73 69.9
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 3.7e-22 107.8 73 72.6
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 4.8e-22 107.5 74 68.9
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 4.8e-22 107.5 73 69.9
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 6.3e-22 107.1 71 73.2
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 8.2e-22 106.7 73 71.2
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 2.4e-21 105.1 74 68.9
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 4.1e-21 104.4 72 68.1
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 5.3e-21 104.0 77 71.4
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 5.3e-21 104.0 74 67.6
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.2e-20 102.8 73 67.1
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.0e-20 102.1 72 66.7
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 3.4e-20 101.3 74 67.6
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 4.5e-20 100.9 94 56.4
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 2.2e-19 98.6 73 65.8
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.4e-18 95.9 75 64.0
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.5e-18 95.1 75 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 3.6e-17 91.3 74 60.8
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 3.6e-17 91.3 75 61.3
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 6.1e-17 90.5 56 76.8
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 6.1e-17 90.5 90 54.4
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 7.9e-17 90.1 97 52.6
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.0e-16 89.7 51 88.2
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 1.8e-16 89.0 75 60.0
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 3.0e-16 88.2 55 78.2
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 5.1e-16 87.4 60 70.0
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 6.7e-16 87.0 68 57.4
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 4.8e-14 80.9 73 56.2
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.4e-12 74.7 53 69.8
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.0e-08 63.2 48 62.5
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.0e-08 63.2 53 60.4
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.1e-08 60.8 60 53.3
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.1e-07 59.7 41 70.7
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.3e-07 58.2 41 68.3
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.4e-07 57.8 74 41.9


User provided reference genes

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